data_4O24 # _model_server_result.job_id 7-3yB8MkYA3YOQ3uUiDJsA _model_server_result.datetime_utc '2024-11-28 10:10:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 4O24 # _exptl.entry_id 4O24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.64 _cell.angle_gamma 90 _cell.entry_id 4O24 _cell.length_a 48.183 _cell.length_b 113.534 _cell.length_c 81.563 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 25 A ASP 14 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 A NE2 HIS 27 A HIS 16 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A OD1 ASP 69 A ASP 58 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc4 A NE2 HIS 191 A HIS 180 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc5 A ND1 HIS 227 A HIS 216 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc6 B OD1 ASP 25 B ASP 14 1_555 H MN MN . B MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc7 B NE2 HIS 27 B HIS 16 1_555 H MN MN . B MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B OD1 ASP 69 B ASP 58 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc9 B NE2 HIS 191 B HIS 180 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc10 B ND1 HIS 227 B HIS 216 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O24 _atom_sites.fract_transf_matrix[1][1] 0.020754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003898 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2Q0 A 1 401 325 2Q0 A01 . D 3 MN A 1 402 326 MN MN . E 3 MN A 1 403 327 MN MN . F 2 2Q0 B 1 401 325 2Q0 A01 . G 3 MN B 1 402 326 MN MN . H 3 MN B 1 403 327 MN MN . I 4 HOH A 1 501 1 HOH HOH . I 4 HOH A 2 502 2 HOH HOH . I 4 HOH A 3 503 4 HOH HOH . I 4 HOH A 4 504 5 HOH HOH . I 4 HOH A 5 505 6 HOH HOH . I 4 HOH A 6 506 10 HOH HOH . I 4 HOH A 7 507 11 HOH HOH . I 4 HOH A 8 508 13 HOH HOH . I 4 HOH A 9 509 15 HOH HOH . I 4 HOH A 10 510 16 HOH HOH . I 4 HOH A 11 511 17 HOH HOH . I 4 HOH A 12 512 19 HOH HOH . I 4 HOH A 13 513 20 HOH HOH . I 4 HOH A 14 514 23 HOH HOH . I 4 HOH A 15 515 24 HOH HOH . I 4 HOH A 16 516 25 HOH HOH . I 4 HOH A 17 517 28 HOH HOH . I 4 HOH A 18 518 30 HOH HOH . I 4 HOH A 19 519 31 HOH HOH . I 4 HOH A 20 520 32 HOH HOH . I 4 HOH A 21 521 33 HOH HOH . I 4 HOH A 22 522 39 HOH HOH . I 4 HOH A 23 523 41 HOH HOH . I 4 HOH A 24 524 42 HOH HOH . I 4 HOH A 25 525 43 HOH HOH . I 4 HOH A 26 526 45 HOH HOH . I 4 HOH A 27 527 46 HOH HOH . I 4 HOH A 28 528 48 HOH HOH . I 4 HOH A 29 529 50 HOH HOH . I 4 HOH A 30 530 51 HOH HOH . I 4 HOH A 31 531 52 HOH HOH . I 4 HOH A 32 532 54 HOH HOH . I 4 HOH A 33 533 55 HOH HOH . I 4 HOH A 34 534 56 HOH HOH . I 4 HOH A 35 535 57 HOH HOH . I 4 HOH A 36 536 58 HOH HOH . I 4 HOH A 37 537 63 HOH HOH . I 4 HOH A 38 538 64 HOH HOH . I 4 HOH A 39 539 65 HOH HOH . I 4 HOH A 40 540 66 HOH HOH . I 4 HOH A 41 541 67 HOH HOH . I 4 HOH A 42 542 68 HOH HOH . I 4 HOH A 43 543 69 HOH HOH . I 4 HOH A 44 544 70 HOH HOH . I 4 HOH A 45 545 72 HOH HOH . I 4 HOH A 46 546 73 HOH HOH . I 4 HOH A 47 547 74 HOH HOH . I 4 HOH A 48 548 75 HOH HOH . I 4 HOH A 49 549 77 HOH HOH . I 4 HOH A 50 550 78 HOH HOH . I 4 HOH A 51 551 80 HOH HOH . I 4 HOH A 52 552 85 HOH HOH . I 4 HOH A 53 553 87 HOH HOH . I 4 HOH A 54 554 89 HOH HOH . I 4 HOH A 55 555 90 HOH HOH . I 4 HOH A 56 556 92 HOH HOH . I 4 HOH A 57 557 93 HOH HOH . I 4 HOH A 58 558 100 HOH HOH . I 4 HOH A 59 559 102 HOH HOH . I 4 HOH A 60 560 103 HOH HOH . J 4 HOH B 1 501 3 HOH HOH . J 4 HOH B 2 502 7 HOH HOH . J 4 HOH B 3 503 8 HOH HOH . J 4 HOH B 4 504 9 HOH HOH . J 4 HOH B 5 505 12 HOH HOH . J 4 HOH B 6 506 14 HOH HOH . J 4 HOH B 7 507 18 HOH HOH . J 4 HOH B 8 508 21 HOH HOH . J 4 HOH B 9 509 22 HOH HOH . J 4 HOH B 10 510 26 HOH HOH . J 4 HOH B 11 511 27 HOH HOH . J 4 HOH B 12 512 29 HOH HOH . J 4 HOH B 13 513 34 HOH HOH . J 4 HOH B 14 514 35 HOH HOH . J 4 HOH B 15 515 36 HOH HOH . J 4 HOH B 16 516 37 HOH HOH . J 4 HOH B 17 517 38 HOH HOH . J 4 HOH B 18 518 40 HOH HOH . J 4 HOH B 19 519 44 HOH HOH . J 4 HOH B 20 520 47 HOH HOH . J 4 HOH B 21 521 49 HOH HOH . J 4 HOH B 22 522 53 HOH HOH . J 4 HOH B 23 523 59 HOH HOH . J 4 HOH B 24 524 60 HOH HOH . J 4 HOH B 25 525 61 HOH HOH . J 4 HOH B 26 526 62 HOH HOH . J 4 HOH B 27 527 71 HOH HOH . J 4 HOH B 28 528 76 HOH HOH . J 4 HOH B 29 529 79 HOH HOH . J 4 HOH B 30 530 81 HOH HOH . J 4 HOH B 31 531 82 HOH HOH . J 4 HOH B 32 532 83 HOH HOH . J 4 HOH B 33 533 84 HOH HOH . J 4 HOH B 34 534 86 HOH HOH . J 4 HOH B 35 535 88 HOH HOH . J 4 HOH B 36 536 91 HOH HOH . J 4 HOH B 37 537 94 HOH HOH . J 4 HOH B 38 538 95 HOH HOH . J 4 HOH B 39 539 96 HOH HOH . J 4 HOH B 40 540 97 HOH HOH . J 4 HOH B 41 541 98 HOH HOH . J 4 HOH B 42 542 99 HOH HOH . J 4 HOH B 43 543 101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.374 _atom_site.Cartn_y 459.935 _atom_site.Cartn_z 79.44 _atom_site.occupancy 0.35 _atom_site.B_iso_or_equiv 46.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #