data_4O2D # _model_server_result.job_id NkYyT3XGk2wV6bFz7vsklg _model_server_result.datetime_utc '2025-09-15 21:06:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4O2D # _exptl.entry_id 4O2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O2D _cell.length_a 77.4 _cell.length_b 135.17 _cell.length_c 157.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 4O2D _atom_sites.fract_transf_matrix[1][1] 0.01292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ASP A 1 801 701 ASP ASP . D 3 TRS A 1 802 3 TRS TRS . E 3 TRS A 1 803 4 TRS TRS . F 2 ASP B 1 801 701 ASP ASP . G 3 TRS B 1 802 1 TRS TRS . H 3 TRS B 1 803 2 TRS TRS . I 4 HOH A 1 901 2 HOH HOH . I 4 HOH A 2 902 3 HOH HOH . I 4 HOH A 3 903 5 HOH HOH . I 4 HOH A 4 904 7 HOH HOH . I 4 HOH A 5 905 8 HOH HOH . I 4 HOH A 6 906 11 HOH HOH . I 4 HOH A 7 907 15 HOH HOH . I 4 HOH A 8 908 16 HOH HOH . I 4 HOH A 9 909 17 HOH HOH . I 4 HOH A 10 910 18 HOH HOH . I 4 HOH A 11 911 19 HOH HOH . I 4 HOH A 12 912 20 HOH HOH . I 4 HOH A 13 913 22 HOH HOH . I 4 HOH A 14 914 23 HOH HOH . I 4 HOH A 15 915 24 HOH HOH . I 4 HOH A 16 916 25 HOH HOH . I 4 HOH A 17 917 26 HOH HOH . I 4 HOH A 18 918 27 HOH HOH . I 4 HOH A 19 919 29 HOH HOH . I 4 HOH A 20 920 30 HOH HOH . I 4 HOH A 21 921 31 HOH HOH . I 4 HOH A 22 922 32 HOH HOH . I 4 HOH A 23 923 33 HOH HOH . I 4 HOH A 24 924 34 HOH HOH . I 4 HOH A 25 925 35 HOH HOH . I 4 HOH A 26 926 40 HOH HOH . I 4 HOH A 27 927 43 HOH HOH . I 4 HOH A 28 928 44 HOH HOH . I 4 HOH A 29 929 46 HOH HOH . I 4 HOH A 30 930 48 HOH HOH . I 4 HOH A 31 931 49 HOH HOH . I 4 HOH A 32 932 50 HOH HOH . I 4 HOH A 33 933 51 HOH HOH . I 4 HOH A 34 934 52 HOH HOH . I 4 HOH A 35 935 54 HOH HOH . I 4 HOH A 36 936 55 HOH HOH . I 4 HOH A 37 937 56 HOH HOH . I 4 HOH A 38 938 57 HOH HOH . I 4 HOH A 39 939 58 HOH HOH . I 4 HOH A 40 940 59 HOH HOH . I 4 HOH A 41 941 60 HOH HOH . I 4 HOH A 42 942 62 HOH HOH . I 4 HOH A 43 943 66 HOH HOH . I 4 HOH A 44 944 68 HOH HOH . I 4 HOH A 45 945 70 HOH HOH . I 4 HOH A 46 946 71 HOH HOH . I 4 HOH A 47 947 74 HOH HOH . I 4 HOH A 48 948 75 HOH HOH . I 4 HOH A 49 949 76 HOH HOH . I 4 HOH A 50 950 77 HOH HOH . I 4 HOH A 51 951 78 HOH HOH . I 4 HOH A 52 952 79 HOH HOH . I 4 HOH A 53 953 80 HOH HOH . I 4 HOH A 54 954 83 HOH HOH . I 4 HOH A 55 955 85 HOH HOH . I 4 HOH A 56 956 86 HOH HOH . I 4 HOH A 57 957 87 HOH HOH . I 4 HOH A 58 958 88 HOH HOH . I 4 HOH A 59 959 89 HOH HOH . I 4 HOH A 60 960 90 HOH HOH . I 4 HOH A 61 961 91 HOH HOH . I 4 HOH A 62 962 92 HOH HOH . I 4 HOH A 63 963 93 HOH HOH . I 4 HOH A 64 964 94 HOH HOH . I 4 HOH A 65 965 95 HOH HOH . I 4 HOH A 66 966 96 HOH HOH . I 4 HOH A 67 967 97 HOH HOH . I 4 HOH A 68 968 98 HOH HOH . I 4 HOH A 69 969 99 HOH HOH . I 4 HOH A 70 970 100 HOH HOH . I 4 HOH A 71 971 101 HOH HOH . I 4 HOH A 72 972 102 HOH HOH . I 4 HOH A 73 973 104 HOH HOH . I 4 HOH A 74 974 105 HOH HOH . I 4 HOH A 75 975 106 HOH HOH . I 4 HOH A 76 976 109 HOH HOH . I 4 HOH A 77 977 111 HOH HOH . I 4 HOH A 78 978 112 HOH HOH . I 4 HOH A 79 979 113 HOH HOH . I 4 HOH A 80 980 114 HOH HOH . I 4 HOH A 81 981 115 HOH HOH . I 4 HOH A 82 982 116 HOH HOH . I 4 HOH A 83 983 117 HOH HOH . I 4 HOH A 84 984 118 HOH HOH . I 4 HOH A 85 985 119 HOH HOH . I 4 HOH A 86 986 120 HOH HOH . I 4 HOH A 87 987 121 HOH HOH . I 4 HOH A 88 988 122 HOH HOH . I 4 HOH A 89 989 123 HOH HOH . I 4 HOH A 90 990 124 HOH HOH . I 4 HOH A 91 991 125 HOH HOH . I 4 HOH A 92 992 126 HOH HOH . I 4 HOH A 93 993 127 HOH HOH . I 4 HOH A 94 994 128 HOH HOH . I 4 HOH A 95 995 129 HOH HOH . I 4 HOH A 96 996 130 HOH HOH . I 4 HOH A 97 997 131 HOH HOH . I 4 HOH A 98 998 132 HOH HOH . I 4 HOH A 99 999 137 HOH HOH . I 4 HOH A 100 1000 148 HOH HOH . I 4 HOH A 101 1001 149 HOH HOH . I 4 HOH A 102 1002 150 HOH HOH . I 4 HOH A 103 1003 153 HOH HOH . I 4 HOH A 104 1004 157 HOH HOH . I 4 HOH A 105 1005 162 HOH HOH . I 4 HOH A 106 1006 165 HOH HOH . I 4 HOH A 107 1007 167 HOH HOH . I 4 HOH A 108 1008 168 HOH HOH . I 4 HOH A 109 1009 169 HOH HOH . I 4 HOH A 110 1010 170 HOH HOH . I 4 HOH A 111 1011 172 HOH HOH . I 4 HOH A 112 1012 173 HOH HOH . I 4 HOH A 113 1013 174 HOH HOH . I 4 HOH A 114 1014 175 HOH HOH . I 4 HOH A 115 1015 176 HOH HOH . I 4 HOH A 116 1016 177 HOH HOH . I 4 HOH A 117 1017 178 HOH HOH . I 4 HOH A 118 1018 179 HOH HOH . I 4 HOH A 119 1019 180 HOH HOH . I 4 HOH A 120 1020 181 HOH HOH . I 4 HOH A 121 1021 182 HOH HOH . I 4 HOH A 122 1022 183 HOH HOH . I 4 HOH A 123 1023 184 HOH HOH . I 4 HOH A 124 1024 185 HOH HOH . I 4 HOH A 125 1025 186 HOH HOH . I 4 HOH A 126 1026 187 HOH HOH . I 4 HOH A 127 1027 188 HOH HOH . I 4 HOH A 128 1028 189 HOH HOH . I 4 HOH A 129 1029 190 HOH HOH . I 4 HOH A 130 1030 191 HOH HOH . I 4 HOH A 131 1031 192 HOH HOH . I 4 HOH A 132 1032 193 HOH HOH . I 4 HOH A 133 1033 194 HOH HOH . I 4 HOH A 134 1034 195 HOH HOH . I 4 HOH A 135 1035 203 HOH HOH . I 4 HOH A 136 1036 204 HOH HOH . I 4 HOH A 137 1037 205 HOH HOH . I 4 HOH A 138 1038 207 HOH HOH . I 4 HOH A 139 1039 208 HOH HOH . I 4 HOH A 140 1040 209 HOH HOH . I 4 HOH A 141 1041 210 HOH HOH . I 4 HOH A 142 1042 211 HOH HOH . I 4 HOH A 143 1043 212 HOH HOH . I 4 HOH A 144 1044 218 HOH HOH . I 4 HOH A 145 1045 221 HOH HOH . I 4 HOH A 146 1046 224 HOH HOH . I 4 HOH A 147 1047 225 HOH HOH . I 4 HOH A 148 1048 228 HOH HOH . I 4 HOH A 149 1049 229 HOH HOH . I 4 HOH A 150 1050 230 HOH HOH . I 4 HOH A 151 1051 231 HOH HOH . I 4 HOH A 152 1052 232 HOH HOH . J 4 HOH B 1 901 1 HOH HOH . J 4 HOH B 2 902 4 HOH HOH . J 4 HOH B 3 903 6 HOH HOH . J 4 HOH B 4 904 9 HOH HOH . J 4 HOH B 5 905 10 HOH HOH . J 4 HOH B 6 906 12 HOH HOH . J 4 HOH B 7 907 13 HOH HOH . J 4 HOH B 8 908 14 HOH HOH . J 4 HOH B 9 909 21 HOH HOH . J 4 HOH B 10 910 28 HOH HOH . J 4 HOH B 11 911 36 HOH HOH . J 4 HOH B 12 912 37 HOH HOH . J 4 HOH B 13 913 38 HOH HOH . J 4 HOH B 14 914 39 HOH HOH . J 4 HOH B 15 915 41 HOH HOH . J 4 HOH B 16 916 42 HOH HOH . J 4 HOH B 17 917 45 HOH HOH . J 4 HOH B 18 918 47 HOH HOH . J 4 HOH B 19 919 53 HOH HOH . J 4 HOH B 20 920 61 HOH HOH . J 4 HOH B 21 921 63 HOH HOH . J 4 HOH B 22 922 64 HOH HOH . J 4 HOH B 23 923 65 HOH HOH . J 4 HOH B 24 924 67 HOH HOH . J 4 HOH B 25 925 69 HOH HOH . J 4 HOH B 26 926 72 HOH HOH . J 4 HOH B 27 927 73 HOH HOH . J 4 HOH B 28 928 81 HOH HOH . J 4 HOH B 29 929 82 HOH HOH . J 4 HOH B 30 930 84 HOH HOH . J 4 HOH B 31 931 103 HOH HOH . J 4 HOH B 32 932 107 HOH HOH . J 4 HOH B 33 933 108 HOH HOH . J 4 HOH B 34 934 110 HOH HOH . J 4 HOH B 35 935 133 HOH HOH . J 4 HOH B 36 936 134 HOH HOH . J 4 HOH B 37 937 135 HOH HOH . J 4 HOH B 38 938 136 HOH HOH . J 4 HOH B 39 939 138 HOH HOH . J 4 HOH B 40 940 139 HOH HOH . J 4 HOH B 41 941 140 HOH HOH . J 4 HOH B 42 942 141 HOH HOH . J 4 HOH B 43 943 142 HOH HOH . J 4 HOH B 44 944 143 HOH HOH . J 4 HOH B 45 945 144 HOH HOH . J 4 HOH B 46 946 145 HOH HOH . J 4 HOH B 47 947 146 HOH HOH . J 4 HOH B 48 948 147 HOH HOH . J 4 HOH B 49 949 151 HOH HOH . J 4 HOH B 50 950 152 HOH HOH . J 4 HOH B 51 951 154 HOH HOH . J 4 HOH B 52 952 155 HOH HOH . J 4 HOH B 53 953 156 HOH HOH . J 4 HOH B 54 954 158 HOH HOH . J 4 HOH B 55 955 159 HOH HOH . J 4 HOH B 56 956 160 HOH HOH . J 4 HOH B 57 957 161 HOH HOH . J 4 HOH B 58 958 163 HOH HOH . J 4 HOH B 59 959 164 HOH HOH . J 4 HOH B 60 960 166 HOH HOH . J 4 HOH B 61 961 171 HOH HOH . J 4 HOH B 62 962 196 HOH HOH . J 4 HOH B 63 963 197 HOH HOH . J 4 HOH B 64 964 198 HOH HOH . J 4 HOH B 65 965 199 HOH HOH . J 4 HOH B 66 966 200 HOH HOH . J 4 HOH B 67 967 201 HOH HOH . J 4 HOH B 68 968 202 HOH HOH . J 4 HOH B 69 969 206 HOH HOH . J 4 HOH B 70 970 213 HOH HOH . J 4 HOH B 71 971 214 HOH HOH . J 4 HOH B 72 972 215 HOH HOH . J 4 HOH B 73 973 216 HOH HOH . J 4 HOH B 74 974 217 HOH HOH . J 4 HOH B 75 975 219 HOH HOH . J 4 HOH B 76 976 220 HOH HOH . J 4 HOH B 77 977 222 HOH HOH . J 4 HOH B 78 978 223 HOH HOH . J 4 HOH B 79 979 226 HOH HOH . J 4 HOH B 80 980 227 HOH HOH . J 4 HOH B 81 981 233 HOH HOH . J 4 HOH B 82 982 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . C 2 98.806 14.942 18.057 1 25.56 ? N ASP 801 A 1 HETATM 2 C CA ASP . . . C 2 98.152 15.877 18.993 1 28.85 ? CA ASP 801 A 1 HETATM 3 C C ASP . . . C 2 98.56 15.663 20.447 1 29.69 ? C ASP 801 A 1 HETATM 4 O O ASP . . . C 2 99.36 14.788 20.764 1 30.83 ? O ASP 801 A 1 HETATM 5 C CB ASP . . . C 2 96.625 15.832 18.886 1 27.13 ? CB ASP 801 A 1 HETATM 6 C CG ASP . . . C 2 96.131 16.376 17.579 1 27.77 ? CG ASP 801 A 1 HETATM 7 O OD1 ASP . . . C 2 96.803 17.294 17.045 1 27.59 ? OD1 ASP 801 A 1 HETATM 8 O OD2 ASP . . . C 2 95.088 15.874 17.104 1 27.25 ? OD2 ASP 801 A 1 HETATM 9 O OXT ASP . . . C 2 98.118 16.423 21.324 1 33.34 ? OXT ASP 801 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #