data_4O2G # _model_server_result.job_id DukYd_iWD0ItpTkP7geobA _model_server_result.datetime_utc '2024-11-24 21:01:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4O2G # _exptl.entry_id 4O2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O2G _cell.length_a 85.067 _cell.length_b 85.067 _cell.length_c 110.202 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C O CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 4O2G _atom_sites.fract_transf_matrix[1][1] 0.011755 _atom_sites.fract_transf_matrix[1][2] 0.006787 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1149 HEM HEM . C 3 CMO A 1 202 1150 CMO CMO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 38.154 -6.651 1.012 1 57.06 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 39.4 -11.284 1.722 1 56.94 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 35.03 -12.543 -0.255 1 58.14 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 33.45 -7.889 0.453 1 50.66 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 38.883 -7.779 1.317 1 54.52 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 40.268 -7.814 1.746 1 56.38 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 40.598 -9.086 1.945 1 54.48 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 39.449 -9.909 1.649 1 49.44 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 41.968 -9.611 2.41 1 51.41 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 41.223 -6.629 1.963 1 54.1 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 40.666 -5.583 2.92 1 63.6 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 41.811 -4.743 3.432 1 74.89 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 42.899 -4.792 2.792 1 70.16 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 41.638 -4.036 4.47 1 66.46 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 38.312 -12.007 1.247 1 53.27 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 38.259 -13.428 1.16 1 58.22 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 37.105 -13.779 0.618 1 60.28 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 36.315 -12.607 0.321 1 60.64 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 39.391 -14.367 1.611 1 47.59 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 36.715 -15.231 0.368 1 67.37 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 36.283 -15.506 -0.864 1 66.41 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 34.236 -11.388 -0.175 1 56.81 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 32.825 -11.271 -0.495 1 58.54 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 32.416 -10.002 -0.281 1 50.58 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 33.538 -9.243 0.168 1 54.67 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 31.969 -12.459 -0.974 1 51.56 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 31.042 -9.32 -0.473 1 51.08 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 30.117 -9.685 -1.37 1 59.25 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 34.582 -7.12 0.535 1 53.76 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 34.659 -5.698 0.312 1 59.81 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 36.135 -5.341 0.494 1 48.31 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 36.799 -6.568 0.789 1 53.31 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 33.503 -4.735 -0.024 1 48.1 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 36.833 -3.979 0.377 1 61.96 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 36.644 -3.418 -1.023 1 64.05 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 37.683 -2.372 -1.312 1 66.72 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 38.55 -2.105 -0.435 1 64.95 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 37.634 -1.819 -2.438 1 62.83 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 38.414 -9.081 1.272 1 47.82 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 37.112 -11.543 0.733 1 56.97 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 34.634 -10.109 0.225 1 52.67 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 35.856 -7.594 0.826 1 58.66 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 36.417 -9.591 1.099 1 54.78 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 509 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #