data_4O2L # _model_server_result.job_id UsTQy65snV09GDGPkSgnew _model_server_result.datetime_utc '2024-11-19 23:14:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4O2L # _exptl.entry_id 4O2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O2L _cell.length_a 57.557 _cell.length_b 70.248 _cell.length_c 79.733 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 22 A SER 20 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc2 A OD1 ASP 62 A ASP 60 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc3 C O1B GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc4 C O3G GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc6 D MG MG . A MG 202 1_555 I O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc7 B OG SER 22 B SER 20 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc8 B OG1 THR 40 B THR 38 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc9 E O1A GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc10 E O1B GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc11 E O3G GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 122 n n PG O2G GTP sing 123 n n PG O3G GTP sing 124 n n PG O3B GTP sing 125 n n O2G HOG2 GTP sing 126 n n O3G HOG3 GTP sing 127 n n O3B PB GTP sing 128 n n PB O1B GTP doub 129 n n PB O2B GTP sing 130 n n PB O3A GTP sing 131 n n O2B HOB2 GTP sing 132 n n O3A PA GTP sing 133 n n PA O1A GTP doub 134 n n PA O2A GTP sing 135 n n PA O5' GTP sing 136 n n O2A HOA2 GTP sing 137 n n O5' C5' GTP sing 138 n n C5' C4' GTP sing 139 n n C5' H5' GTP sing 140 n n C5' "H5''" GTP sing 141 n n C4' O4' GTP sing 142 n n C4' C3' GTP sing 143 n n C4' H4' GTP sing 144 n n O4' C1' GTP sing 145 n n C3' O3' GTP sing 146 n n C3' C2' GTP sing 147 n n C3' H3' GTP sing 148 n n O3' HO3' GTP sing 149 n n C2' O2' GTP sing 150 n n C2' C1' GTP sing 151 n n C2' H2' GTP sing 152 n n O2' HO2' GTP sing 153 n n C1' N9 GTP sing 154 n n C1' H1' GTP sing 155 n n N9 C8 GTP sing 156 n y N9 C4 GTP sing 157 n y C8 N7 GTP doub 158 n y C8 H8 GTP sing 159 n n N7 C5 GTP sing 160 n y C5 C6 GTP sing 161 n n C5 C4 GTP doub 162 n y C6 O6 GTP doub 163 n n C6 N1 GTP sing 164 n n N1 C2 GTP sing 165 n n N1 HN1 GTP sing 166 n n C2 N2 GTP sing 167 n n C2 N3 GTP doub 168 n n N2 HN21 GTP sing 169 n n N2 HN22 GTP sing 170 n n N3 C4 GTP sing 171 n n # _atom_sites.entry_id 4O2L _atom_sites.fract_transf_matrix[1][1] 0.017374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 201 201 GTP GTP . D 3 MG A 1 202 202 MG MG . E 2 GTP B 1 201 201 GTP GTP . F 3 MG B 1 202 202 MG MG . G 4 TRS B 1 203 203 TRS TRS . H 5 ACT B 1 204 204 ACT ACT . I 6 HOH A 1 301 301 HOH HOH . I 6 HOH A 2 302 302 HOH HOH . I 6 HOH A 3 303 303 HOH HOH . I 6 HOH A 4 304 304 HOH HOH . I 6 HOH A 5 305 305 HOH HOH . I 6 HOH A 6 306 306 HOH HOH . I 6 HOH A 7 307 307 HOH HOH . I 6 HOH A 8 308 308 HOH HOH . I 6 HOH A 9 309 309 HOH HOH . I 6 HOH A 10 310 310 HOH HOH . I 6 HOH A 11 311 311 HOH HOH . I 6 HOH A 12 312 312 HOH HOH . I 6 HOH A 13 313 313 HOH HOH . I 6 HOH A 14 314 314 HOH HOH . I 6 HOH A 15 315 315 HOH HOH . I 6 HOH A 16 316 316 HOH HOH . I 6 HOH A 17 317 317 HOH HOH . I 6 HOH A 18 318 318 HOH HOH . I 6 HOH A 19 319 319 HOH HOH . I 6 HOH A 20 320 320 HOH HOH . I 6 HOH A 21 321 321 HOH HOH . I 6 HOH A 22 322 322 HOH HOH . I 6 HOH A 23 323 323 HOH HOH . I 6 HOH A 24 324 324 HOH HOH . I 6 HOH A 25 325 325 HOH HOH . I 6 HOH A 26 326 326 HOH HOH . I 6 HOH A 27 327 327 HOH HOH . I 6 HOH A 28 328 328 HOH HOH . I 6 HOH A 29 329 329 HOH HOH . I 6 HOH A 30 330 330 HOH HOH . I 6 HOH A 31 331 331 HOH HOH . I 6 HOH A 32 332 332 HOH HOH . I 6 HOH A 33 333 333 HOH HOH . I 6 HOH A 34 334 334 HOH HOH . I 6 HOH A 35 335 335 HOH HOH . I 6 HOH A 36 336 336 HOH HOH . I 6 HOH A 37 337 337 HOH HOH . I 6 HOH A 38 338 338 HOH HOH . I 6 HOH A 39 339 339 HOH HOH . I 6 HOH A 40 340 340 HOH HOH . I 6 HOH A 41 341 341 HOH HOH . I 6 HOH A 42 342 342 HOH HOH . I 6 HOH A 43 343 343 HOH HOH . I 6 HOH A 44 344 344 HOH HOH . I 6 HOH A 45 345 345 HOH HOH . I 6 HOH A 46 346 346 HOH HOH . I 6 HOH A 47 347 347 HOH HOH . I 6 HOH A 48 348 348 HOH HOH . I 6 HOH A 49 349 349 HOH HOH . I 6 HOH A 50 350 350 HOH HOH . I 6 HOH A 51 351 351 HOH HOH . I 6 HOH A 52 352 352 HOH HOH . I 6 HOH A 53 353 353 HOH HOH . I 6 HOH A 54 354 354 HOH HOH . I 6 HOH A 55 355 355 HOH HOH . I 6 HOH A 56 356 356 HOH HOH . I 6 HOH A 57 357 357 HOH HOH . I 6 HOH A 58 358 358 HOH HOH . I 6 HOH A 59 359 359 HOH HOH . I 6 HOH A 60 360 360 HOH HOH . I 6 HOH A 61 361 361 HOH HOH . J 6 HOH B 1 301 301 HOH HOH . J 6 HOH B 2 302 302 HOH HOH . J 6 HOH B 3 303 303 HOH HOH . J 6 HOH B 4 304 304 HOH HOH . J 6 HOH B 5 305 305 HOH HOH . J 6 HOH B 6 306 306 HOH HOH . J 6 HOH B 7 307 307 HOH HOH . J 6 HOH B 8 308 308 HOH HOH . J 6 HOH B 9 309 309 HOH HOH . J 6 HOH B 10 310 310 HOH HOH . J 6 HOH B 11 311 311 HOH HOH . J 6 HOH B 12 312 312 HOH HOH . J 6 HOH B 13 313 313 HOH HOH . J 6 HOH B 14 314 314 HOH HOH . J 6 HOH B 15 315 315 HOH HOH . J 6 HOH B 16 316 316 HOH HOH . J 6 HOH B 17 317 317 HOH HOH . J 6 HOH B 18 318 318 HOH HOH . J 6 HOH B 19 319 319 HOH HOH . J 6 HOH B 20 320 320 HOH HOH . J 6 HOH B 21 321 321 HOH HOH . J 6 HOH B 22 322 322 HOH HOH . J 6 HOH B 23 323 323 HOH HOH . J 6 HOH B 24 324 324 HOH HOH . J 6 HOH B 25 325 325 HOH HOH . J 6 HOH B 26 326 326 HOH HOH . J 6 HOH B 27 327 327 HOH HOH . J 6 HOH B 28 328 328 HOH HOH . J 6 HOH B 29 329 329 HOH HOH . J 6 HOH B 30 330 330 HOH HOH . J 6 HOH B 31 331 331 HOH HOH . J 6 HOH B 32 332 332 HOH HOH . J 6 HOH B 33 333 333 HOH HOH . J 6 HOH B 34 334 335 HOH HOH . J 6 HOH B 35 335 336 HOH HOH . J 6 HOH B 36 336 337 HOH HOH . J 6 HOH B 37 337 338 HOH HOH . J 6 HOH B 38 338 339 HOH HOH . J 6 HOH B 39 339 340 HOH HOH . J 6 HOH B 40 340 341 HOH HOH . J 6 HOH B 41 341 342 HOH HOH . J 6 HOH B 42 342 343 HOH HOH . J 6 HOH B 43 343 344 HOH HOH . J 6 HOH B 44 344 345 HOH HOH . J 6 HOH B 45 345 346 HOH HOH . J 6 HOH B 46 346 347 HOH HOH . J 6 HOH B 47 347 348 HOH HOH . J 6 HOH B 48 348 349 HOH HOH . J 6 HOH B 49 349 350 HOH HOH . J 6 HOH B 50 350 351 HOH HOH . J 6 HOH B 51 351 352 HOH HOH . J 6 HOH B 52 352 353 HOH HOH . J 6 HOH B 53 353 354 HOH HOH . J 6 HOH B 54 354 355 HOH HOH . J 6 HOH B 55 355 356 HOH HOH . J 6 HOH B 56 356 357 HOH HOH . J 6 HOH B 57 357 358 HOH HOH . J 6 HOH B 58 358 359 HOH HOH . J 6 HOH B 59 359 360 HOH HOH . J 6 HOH B 60 360 361 HOH HOH . J 6 HOH B 61 361 362 HOH HOH . J 6 HOH B 62 362 363 HOH HOH . J 6 HOH B 63 363 364 HOH HOH . J 6 HOH B 64 364 365 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 2 -13.817 12.643 19.363 1 34.64 ? PG GTP 201 A 1 HETATM 2 O O1G GTP . . . C 2 -14.425 13.88 19.974 1 42 ? O1G GTP 201 A 1 HETATM 3 O O2G GTP . . . C 2 -12.935 11.954 20.386 1 34.55 ? O2G GTP 201 A 1 HETATM 4 O O3G GTP . . . C 2 -14.89 11.676 18.911 1 49.46 ? O3G GTP 201 A 1 HETATM 5 O O3B GTP . . . C 2 -12.921 13.156 18.128 1 35.3 ? O3B GTP 201 A 1 HETATM 6 P PB GTP . . . C 2 -12.333 12.184 16.985 1 27.38 ? PB GTP 201 A 1 HETATM 7 O O1B GTP . . . C 2 -13.22 10.985 16.726 1 25.62 ? O1B GTP 201 A 1 HETATM 8 O O2B GTP . . . C 2 -10.946 11.766 17.432 1 26.32 ? O2B GTP 201 A 1 HETATM 9 O O3A GTP . . . C 2 -12.245 13.145 15.684 1 30.88 ? O3A GTP 201 A 1 HETATM 10 P PA GTP . . . C 2 -13.24 13.103 14.416 1 29.44 ? PA GTP 201 A 1 HETATM 11 O O1A GTP . . . C 2 -14.658 13.252 14.867 1 36.49 ? O1A GTP 201 A 1 HETATM 12 O O2A GTP . . . C 2 -13.057 11.838 13.606 1 26.67 ? O2A GTP 201 A 1 HETATM 13 O O5' GTP . . . C 2 -12.847 14.429 13.613 1 32.32 ? O5' GTP 201 A 1 HETATM 14 C C5' GTP . . . C 2 -12.881 15.704 14.226 1 27.96 ? C5' GTP 201 A 1 HETATM 15 C C4' GTP . . . C 2 -13.029 16.701 13.092 1 30.48 ? C4' GTP 201 A 1 HETATM 16 O O4' GTP . . . C 2 -11.845 16.631 12.32 1 30.63 ? O4' GTP 201 A 1 HETATM 17 C C3' GTP . . . C 2 -14.168 16.321 12.164 1 35.05 ? C3' GTP 201 A 1 HETATM 18 O O3' GTP . . . C 2 -14.805 17.509 11.766 1 34.66 ? O3' GTP 201 A 1 HETATM 19 C C2' GTP . . . C 2 -13.5 15.682 10.959 1 33.33 ? C2' GTP 201 A 1 HETATM 20 O O2' GTP . . . C 2 -14.239 15.895 9.774 1 32.79 ? O2' GTP 201 A 1 HETATM 21 C C1' GTP . . . C 2 -12.121 16.333 10.96 1 32.15 ? C1' GTP 201 A 1 HETATM 22 N N9 GTP . . . C 2 -11.045 15.433 10.496 1 34.84 ? N9 GTP 201 A 1 HETATM 23 C C8 GTP . . . C 2 -10.708 14.229 11.062 1 30.25 ? C8 GTP 201 A 1 HETATM 24 N N7 GTP . . . C 2 -9.659 13.71 10.373 1 28.54 ? N7 GTP 201 A 1 HETATM 25 C C5 GTP . . . C 2 -9.304 14.565 9.379 1 27.83 ? C5 GTP 201 A 1 HETATM 26 C C6 GTP . . . C 2 -8.302 14.521 8.402 1 25.72 ? C6 GTP 201 A 1 HETATM 27 O O6 GTP . . . C 2 -7.528 13.562 8.325 1 27.06 ? O6 GTP 201 A 1 HETATM 28 N N1 GTP . . . C 2 -8.179 15.557 7.507 1 25.88 ? N1 GTP 201 A 1 HETATM 29 C C2 GTP . . . C 2 -9.043 16.636 7.585 1 27.55 ? C2 GTP 201 A 1 HETATM 30 N N2 GTP . . . C 2 -8.924 17.639 6.717 1 26.91 ? N2 GTP 201 A 1 HETATM 31 N N3 GTP . . . C 2 -10.026 16.68 8.557 1 26.67 ? N3 GTP 201 A 1 HETATM 32 C C4 GTP . . . C 2 -10.164 15.661 9.447 1 32.03 ? C4 GTP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 32 #