data_4O2Z # _model_server_result.job_id NhtR6zsRL5porTHftGSBQg _model_server_result.datetime_utc '2025-02-27 02:41:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4O2Z # _exptl.entry_id 4O2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 569.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{[6-(acetylamino)pyrimidin-4-yl]oxy}-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-2,3-dihydro-1H-indole-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O2Z _cell.length_a 87.141 _cell.length_b 87.141 _cell.length_c 295.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H30 F3 N7 O3' _chem_comp.formula_weight 569.578 _chem_comp.id 046 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{[6-(acetylamino)pyrimidin-4-yl]oxy}-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-2,3-dihydro-1H-indole-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C25 046 sing 1 n n C22 C19 046 sing 2 n n C32 C25 046 doub 3 n y C32 C31 046 sing 4 n y C25 C26 046 sing 5 n y O34 C31 046 sing 6 n n O34 C35 046 sing 7 n n C19 N18 046 sing 8 n n O46 C45 046 doub 9 n n C31 C29 046 doub 10 n y C41 C35 046 doub 11 n y C41 C40 046 sing 12 n y C35 N36 046 sing 13 n y C45 C47 046 sing 14 n n C45 N43 046 sing 15 n n C40 N43 046 sing 16 n n C40 N39 046 doub 17 n y C26 N18 046 sing 18 n n C26 C27 046 doub 19 n y N36 C37 046 doub 20 n y N18 C16 046 sing 21 n n C29 C27 046 sing 22 n y N39 C37 046 sing 23 n y N14 C16 046 sing 24 n n N14 C11 046 sing 25 n n C16 O17 046 doub 26 n n C9 C11 046 doub 27 n y C9 C7 046 sing 28 n y C11 C12 046 sing 29 n y C7 C6 046 doub 30 n y C12 C5 046 doub 31 n y C6 C5 046 sing 32 n y C6 C51 046 sing 33 n n C62 C65 046 sing 34 n n C62 N61 046 sing 35 n n C5 C2 046 sing 36 n n C68 N61 046 sing 37 n n C65 N54 046 sing 38 n n N54 C51 046 sing 39 n n N54 C55 046 sing 40 n n N61 C58 046 sing 41 n n C58 C55 046 sing 42 n n C2 F4 046 sing 43 n n C2 F3 046 sing 44 n n C2 F1 046 sing 45 n n C7 H1 046 sing 46 n n C9 H2 046 sing 47 n n C12 H3 046 sing 48 n n N14 H4 046 sing 49 n n C19 H5 046 sing 50 n n C22 H6 046 sing 51 n n C27 H7 046 sing 52 n n C29 H8 046 sing 53 n n C32 H9 046 sing 54 n n C37 H10 046 sing 55 n n C41 H11 046 sing 56 n n N43 H12 046 sing 57 n n C47 H13 046 sing 58 n n C47 H14 046 sing 59 n n C47 H15 046 sing 60 n n C51 H16 046 sing 61 n n C51 H17 046 sing 62 n n C55 H19 046 sing 63 n n C55 H20 046 sing 64 n n C58 H21 046 sing 65 n n C58 H22 046 sing 66 n n C62 H24 046 sing 67 n n C62 H25 046 sing 68 n n C65 H26 046 sing 69 n n C65 H27 046 sing 70 n n C68 H28 046 sing 71 n n C68 H29 046 sing 72 n n C68 H30 046 sing 73 n n C19 H31 046 sing 74 n n C22 H32 046 sing 75 n n # _atom_sites.entry_id 4O2Z _atom_sites.fract_transf_matrix[1][1] 0.011476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 046 A 1 401 1 046 XXX . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 5 HOH HOH . C 3 HOH A 4 504 6 HOH HOH . C 3 HOH A 5 505 10 HOH HOH . C 3 HOH A 6 506 12 HOH HOH . C 3 HOH A 7 507 13 HOH HOH . C 3 HOH A 8 508 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 046 . . . B 2 -14.516 -14.98 -24.281 1 86.99 ? F1 046 401 A 1 HETATM 2 C C2 046 . . . B 2 -15.695 -14.502 -23.904 1 86.4 ? C2 046 401 A 1 HETATM 3 F F3 046 . . . B 2 -16.633 -15.317 -24.372 1 86.8 ? F3 046 401 A 1 HETATM 4 F F4 046 . . . B 2 -15.739 -14.667 -22.584 1 85.84 ? F4 046 401 A 1 HETATM 5 C C5 046 . . . B 2 -15.903 -13.066 -24.323 1 86.09 ? C5 046 401 A 1 HETATM 6 C C6 046 . . . B 2 -16.059 -12.609 -25.641 1 85.06 ? C6 046 401 A 1 HETATM 7 C C7 046 . . . B 2 -16.326 -11.255 -25.856 1 85.29 ? C7 046 401 A 1 HETATM 8 C C9 046 . . . B 2 -16.398 -10.36 -24.805 1 85.77 ? C9 046 401 A 1 HETATM 9 C C11 046 . . . B 2 -16.203 -10.8 -23.504 1 86.74 ? C11 046 401 A 1 HETATM 10 C C12 046 . . . B 2 -15.969 -12.152 -23.271 1 86.55 ? C12 046 401 A 1 HETATM 11 N N14 046 . . . B 2 -16.207 -9.841 -22.456 1 87.92 ? N14 046 401 A 1 HETATM 12 C C16 046 . . . B 2 -15.974 -10.056 -21.134 1 88.86 ? C16 046 401 A 1 HETATM 13 O O17 046 . . . B 2 -15.63 -11.122 -20.642 1 88.99 ? O17 046 401 A 1 HETATM 14 N N18 046 . . . B 2 -16.214 -8.932 -20.242 1 89.41 ? N18 046 401 A 1 HETATM 15 C C19 046 . . . B 2 -17.364 -8.014 -20.291 1 89.44 ? C19 046 401 A 1 HETATM 16 C C22 046 . . . B 2 -17.364 -7.312 -18.93 1 89.45 ? C22 046 401 A 1 HETATM 17 C C25 046 . . . B 2 -16.051 -7.719 -18.317 1 89.5 ? C25 046 401 A 1 HETATM 18 C C26 046 . . . B 2 -15.43 -8.675 -19.114 1 89.48 ? C26 046 401 A 1 HETATM 19 C C27 046 . . . B 2 -14.202 -9.216 -18.738 1 89.51 ? C27 046 401 A 1 HETATM 20 C C29 046 . . . B 2 -13.614 -8.81 -17.547 1 89.4 ? C29 046 401 A 1 HETATM 21 C C31 046 . . . B 2 -14.252 -7.868 -16.739 1 89.2 ? C31 046 401 A 1 HETATM 22 C C32 046 . . . B 2 -15.463 -7.312 -17.127 1 89.46 ? C32 046 401 A 1 HETATM 23 O O34 046 . . . B 2 -13.71 -7.471 -15.513 1 88.72 ? O34 046 401 A 1 HETATM 24 C C35 046 . . . B 2 -13.193 -8.413 -14.67 1 87.87 ? C35 046 401 A 1 HETATM 25 N N36 046 . . . B 2 -13.977 -9.376 -14.222 1 87.01 ? N36 046 401 A 1 HETATM 26 C C37 046 . . . B 2 -13.38 -10.226 -13.381 1 86.76 ? C37 046 401 A 1 HETATM 27 N N39 046 . . . B 2 -12.114 -10.224 -12.952 1 87.08 ? N39 046 401 A 1 HETATM 28 C C40 046 . . . B 2 -11.357 -9.231 -13.448 1 87.69 ? C40 046 401 A 1 HETATM 29 C C41 046 . . . B 2 -11.858 -8.268 -14.332 1 87.68 ? C41 046 401 A 1 HETATM 30 N N43 046 . . . B 2 -10.02 -9.295 -13.022 1 88.7 ? N43 046 401 A 1 HETATM 31 C C45 046 . . . B 2 -8.971 -8.507 -13.385 1 89.95 ? C45 046 401 A 1 HETATM 32 O O46 046 . . . B 2 -9.061 -7.598 -14.206 1 90.68 ? O46 046 401 A 1 HETATM 33 C C47 046 . . . B 2 -7.672 -8.838 -12.714 1 90.22 ? C47 046 401 A 1 HETATM 34 C C51 046 . . . B 2 -15.886 -13.532 -26.829 1 83.49 ? C51 046 401 A 1 HETATM 35 N N54 046 . . . B 2 -15.784 -12.851 -28.128 1 82.3 ? N54 046 401 A 1 HETATM 36 C C55 046 . . . B 2 -14.401 -12.448 -28.421 1 81.93 ? C55 046 401 A 1 HETATM 37 C C58 046 . . . B 2 -14.333 -11.714 -29.748 1 81.72 ? C58 046 401 A 1 HETATM 38 N N61 046 . . . B 2 -14.824 -12.559 -30.834 1 81.57 ? N61 046 401 A 1 HETATM 39 C C62 046 . . . B 2 -16.196 -12.977 -30.55 1 81.52 ? C62 046 401 A 1 HETATM 40 C C65 046 . . . B 2 -16.277 -13.706 -29.217 1 81.64 ? C65 046 401 A 1 HETATM 41 C C68 046 . . . B 2 -14.751 -11.854 -32.112 1 81.4 ? C68 046 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #