data_4O3M # _model_server_result.job_id iLfT4MlaNnJGVllkIL0blg _model_server_result.datetime_utc '2024-12-26 11:44:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1302}' # _entry.id 4O3M # _exptl.entry_id 4O3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.14 _cell.angle_gamma 90 _cell.entry_id 4O3M _cell.length_a 100.93 _cell.length_b 164.68 _cell.length_c 50.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 397 A CYS 1036 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc2 A SG CYS 416 A CYS 1055 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc3 A SG CYS 424 A CYS 1063 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc4 A SG CYS 427 A CYS 1066 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc5 D CA CA . A CA 1301 1_555 F O1B ADP . A ADP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc6 D CA CA . A CA 1301 1_555 O O HOH . A HOH 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc7 D CA CA . A CA 1301 1_555 O O HOH . A HOH 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc8 D CA CA . A CA 1301 1_555 O O HOH . A HOH 1443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? hydrog WATSON-CRICK hydrog1 B N3 DC 3 P DC 3 1_555 C N1 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 3 P DC 3 1_555 C O6 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 3 P DC 3 1_555 C N2 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 4 P DG 4 1_555 C N3 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 4 P DG 4 1_555 C O2 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 4 P DG 4 1_555 C N4 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DT 5 P DT 5 1_555 C N1 DA 12 T DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O4 DT 5 P DT 5 1_555 C N6 DA 12 T DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DC 6 P DC 6 1_555 C N1 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 DC 6 P DC 6 1_555 C O6 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 DC 6 P DC 6 1_555 C N2 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DG 7 P DG 7 1_555 C N3 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N2 DG 7 P DG 7 1_555 C O2 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O6 DG 7 P DG 7 1_555 C N4 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DA 8 P DA 8 1_555 C N3 DT 9 T DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N6 DA 8 P DA 8 1_555 C O4 DT 9 T DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DG 9 P DG 9 1_555 C N3 DC 8 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 DG 9 P DG 9 1_555 C O2 DC 8 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 9 P DG 9 1_555 C N4 DC 8 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DA 10 P DA 10 1_555 C N3 DT 7 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N6 DA 10 P DA 10 1_555 C O4 DT 7 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 DT 11 P DT 11 1_555 C N1 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O4 DT 11 P DT 11 1_555 C N6 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog24 B N4 DC 12 P DC 12 1_555 C O6 DG 5 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog25 B N4 DC 13 P DC 13 1_555 C O6 DG 4 T DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O3M _atom_sites.fract_transf_matrix[1][1] 0.009908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000024 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1301 3000 CA CA . E 5 ZN A 1 1302 3500 ZN ZN . F 6 ADP A 1 1303 4000 ADP ADP . G 7 EDO A 1 1304 1 EDO EDO . H 7 EDO A 1 1305 2 EDO EDO . I 7 EDO A 1 1306 3 EDO EDO . J 7 EDO A 1 1307 4 EDO EDO . K 7 EDO A 1 1308 5 EDO EDO . L 7 EDO A 1 1309 6 EDO EDO . M 7 EDO A 1 1310 7 EDO EDO . N 7 EDO A 1 1311 8 EDO EDO . O 8 HOH A 1 1401 1 HOH HOH . O 8 HOH A 2 1402 2 HOH HOH . O 8 HOH A 3 1403 3 HOH HOH . O 8 HOH A 4 1404 6 HOH HOH . O 8 HOH A 5 1405 7 HOH HOH . O 8 HOH A 6 1406 8 HOH HOH . O 8 HOH A 7 1407 9 HOH HOH . O 8 HOH A 8 1408 10 HOH HOH . O 8 HOH A 9 1409 11 HOH HOH . O 8 HOH A 10 1410 12 HOH HOH . O 8 HOH A 11 1411 13 HOH HOH . O 8 HOH A 12 1412 14 HOH HOH . O 8 HOH A 13 1413 15 HOH HOH . O 8 HOH A 14 1414 16 HOH HOH . O 8 HOH A 15 1415 17 HOH HOH . O 8 HOH A 16 1416 18 HOH HOH . O 8 HOH A 17 1417 19 HOH HOH . O 8 HOH A 18 1418 20 HOH HOH . O 8 HOH A 19 1419 21 HOH HOH . O 8 HOH A 20 1420 24 HOH HOH . O 8 HOH A 21 1421 29 HOH HOH . O 8 HOH A 22 1422 30 HOH HOH . O 8 HOH A 23 1423 31 HOH HOH . O 8 HOH A 24 1424 32 HOH HOH . O 8 HOH A 25 1425 33 HOH HOH . O 8 HOH A 26 1426 36 HOH HOH . O 8 HOH A 27 1427 37 HOH HOH . O 8 HOH A 28 1428 40 HOH HOH . O 8 HOH A 29 1429 42 HOH HOH . O 8 HOH A 30 1430 44 HOH HOH . O 8 HOH A 31 1431 45 HOH HOH . O 8 HOH A 32 1432 46 HOH HOH . O 8 HOH A 33 1433 47 HOH HOH . O 8 HOH A 34 1434 50 HOH HOH . O 8 HOH A 35 1435 51 HOH HOH . O 8 HOH A 36 1436 52 HOH HOH . O 8 HOH A 37 1437 53 HOH HOH . O 8 HOH A 38 1438 55 HOH HOH . O 8 HOH A 39 1439 56 HOH HOH . O 8 HOH A 40 1440 57 HOH HOH . O 8 HOH A 41 1441 59 HOH HOH . O 8 HOH A 42 1442 61 HOH HOH . O 8 HOH A 43 1443 64 HOH HOH . O 8 HOH A 44 1444 65 HOH HOH . O 8 HOH A 45 1445 66 HOH HOH . O 8 HOH A 46 1446 67 HOH HOH . O 8 HOH A 47 1447 68 HOH HOH . O 8 HOH A 48 1448 69 HOH HOH . O 8 HOH A 49 1449 73 HOH HOH . O 8 HOH A 50 1450 74 HOH HOH . O 8 HOH A 51 1451 81 HOH HOH . O 8 HOH A 52 1452 82 HOH HOH . O 8 HOH A 53 1453 88 HOH HOH . O 8 HOH A 54 1454 89 HOH HOH . O 8 HOH A 55 1455 91 HOH HOH . O 8 HOH A 56 1456 92 HOH HOH . O 8 HOH A 57 1457 93 HOH HOH . O 8 HOH A 58 1458 94 HOH HOH . P 8 HOH P 1 101 83 HOH HOH . Q 8 HOH T 1 101 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 139.307 _atom_site.Cartn_y -6.211 _atom_site.Cartn_z 56.785 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 98.84 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #