data_4O3M
#
_model_server_result.job_id            cRBR91Fou0lHW6VZN9-_7A 
_model_server_result.datetime_utc      '2024-10-20 21:08:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1306}' 
#
_entry.id    4O3M 
#
_exptl.entry_id    4O3M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.14 
_cell.angle_gamma         90 
_cell.entry_id            4O3M 
_cell.length_a            100.93 
_cell.length_b            164.68 
_cell.length_c            50.98 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 397 A CYS 1036 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc2 A SG CYS 416 A CYS 1055 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc3 A SG CYS 424 A CYS 1063 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc4 A SG CYS 427 A CYS 1066 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc5 D CA CA . A CA 1301 1_555 F O1B ADP . A ADP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc6 D CA CA . A CA 1301 1_555 O O HOH . A HOH 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc7 D CA CA . A CA 1301 1_555 O O HOH . A HOH 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc8 D CA CA . A CA 1301 1_555 O O HOH . A HOH 1443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
hydrog WATSON-CRICK hydrog1 B N3 DC 3 P DC 3 1_555 C N1 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N4 DC 3 P DC 3 1_555 C O6 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O2 DC 3 P DC 3 1_555 C N2 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N1 DG 4 P DG 4 1_555 C N3 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N2 DG 4 P DG 4 1_555 C O2 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O6 DG 4 P DG 4 1_555 C N4 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N3 DT 5 P DT 5 1_555 C N1 DA 12 T DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B O4 DT 5 P DT 5 1_555 C N6 DA 12 T DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N3 DC 6 P DC 6 1_555 C N1 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N4 DC 6 P DC 6 1_555 C O6 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B O2 DC 6 P DC 6 1_555 C N2 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N1 DG 7 P DG 7 1_555 C N3 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N2 DG 7 P DG 7 1_555 C O2 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B O6 DG 7 P DG 7 1_555 C N4 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N1 DA 8 P DA 8 1_555 C N3 DT 9 T DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B N6 DA 8 P DA 8 1_555 C O4 DT 9 T DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N1 DG 9 P DG 9 1_555 C N3 DC 8 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B N2 DG 9 P DG 9 1_555 C O2 DC 8 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B O6 DG 9 P DG 9 1_555 C N4 DC 8 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B N1 DA 10 P DA 10 1_555 C N3 DT 7 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B N6 DA 10 P DA 10 1_555 C O4 DT 7 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B N3 DT 11 P DT 11 1_555 C N1 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B O4 DT 11 P DT 11 1_555 C N6 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog24 B N4 DC 12 P DC 12 1_555 C O6 DG 5 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog25 B N4 DC 13 P DC 13 1_555 C O6 DG 4 T DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 276 n n 
C1 C2 EDO sing 277 n n 
C1 H11 EDO sing 278 n n 
C1 H12 EDO sing 279 n n 
O1 HO1 EDO sing 280 n n 
C2 O2 EDO sing 281 n n 
C2 H21 EDO sing 282 n n 
C2 H22 EDO sing 283 n n 
O2 HO2 EDO sing 284 n n 
#
_atom_sites.entry_id                     4O3M 
_atom_sites.fract_transf_matrix[1][1]    0.009908 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000024 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 1301 3000 CA CA . 
E 5 ZN A 1 1302 3500 ZN ZN . 
F 6 ADP A 1 1303 4000 ADP ADP . 
G 7 EDO A 1 1304 1 EDO EDO . 
H 7 EDO A 1 1305 2 EDO EDO . 
I 7 EDO A 1 1306 3 EDO EDO . 
J 7 EDO A 1 1307 4 EDO EDO . 
K 7 EDO A 1 1308 5 EDO EDO . 
L 7 EDO A 1 1309 6 EDO EDO . 
M 7 EDO A 1 1310 7 EDO EDO . 
N 7 EDO A 1 1311 8 EDO EDO . 
O 8 HOH A 1 1401 1 HOH HOH . 
O 8 HOH A 2 1402 2 HOH HOH . 
O 8 HOH A 3 1403 3 HOH HOH . 
O 8 HOH A 4 1404 6 HOH HOH . 
O 8 HOH A 5 1405 7 HOH HOH . 
O 8 HOH A 6 1406 8 HOH HOH . 
O 8 HOH A 7 1407 9 HOH HOH . 
O 8 HOH A 8 1408 10 HOH HOH . 
O 8 HOH A 9 1409 11 HOH HOH . 
O 8 HOH A 10 1410 12 HOH HOH . 
O 8 HOH A 11 1411 13 HOH HOH . 
O 8 HOH A 12 1412 14 HOH HOH . 
O 8 HOH A 13 1413 15 HOH HOH . 
O 8 HOH A 14 1414 16 HOH HOH . 
O 8 HOH A 15 1415 17 HOH HOH . 
O 8 HOH A 16 1416 18 HOH HOH . 
O 8 HOH A 17 1417 19 HOH HOH . 
O 8 HOH A 18 1418 20 HOH HOH . 
O 8 HOH A 19 1419 21 HOH HOH . 
O 8 HOH A 20 1420 24 HOH HOH . 
O 8 HOH A 21 1421 29 HOH HOH . 
O 8 HOH A 22 1422 30 HOH HOH . 
O 8 HOH A 23 1423 31 HOH HOH . 
O 8 HOH A 24 1424 32 HOH HOH . 
O 8 HOH A 25 1425 33 HOH HOH . 
O 8 HOH A 26 1426 36 HOH HOH . 
O 8 HOH A 27 1427 37 HOH HOH . 
O 8 HOH A 28 1428 40 HOH HOH . 
O 8 HOH A 29 1429 42 HOH HOH . 
O 8 HOH A 30 1430 44 HOH HOH . 
O 8 HOH A 31 1431 45 HOH HOH . 
O 8 HOH A 32 1432 46 HOH HOH . 
O 8 HOH A 33 1433 47 HOH HOH . 
O 8 HOH A 34 1434 50 HOH HOH . 
O 8 HOH A 35 1435 51 HOH HOH . 
O 8 HOH A 36 1436 52 HOH HOH . 
O 8 HOH A 37 1437 53 HOH HOH . 
O 8 HOH A 38 1438 55 HOH HOH . 
O 8 HOH A 39 1439 56 HOH HOH . 
O 8 HOH A 40 1440 57 HOH HOH . 
O 8 HOH A 41 1441 59 HOH HOH . 
O 8 HOH A 42 1442 61 HOH HOH . 
O 8 HOH A 43 1443 64 HOH HOH . 
O 8 HOH A 44 1444 65 HOH HOH . 
O 8 HOH A 45 1445 66 HOH HOH . 
O 8 HOH A 46 1446 67 HOH HOH . 
O 8 HOH A 47 1447 68 HOH HOH . 
O 8 HOH A 48 1448 69 HOH HOH . 
O 8 HOH A 49 1449 73 HOH HOH . 
O 8 HOH A 50 1450 74 HOH HOH . 
O 8 HOH A 51 1451 81 HOH HOH . 
O 8 HOH A 52 1452 82 HOH HOH . 
O 8 HOH A 53 1453 88 HOH HOH . 
O 8 HOH A 54 1454 89 HOH HOH . 
O 8 HOH A 55 1455 91 HOH HOH . 
O 8 HOH A 56 1456 92 HOH HOH . 
O 8 HOH A 57 1457 93 HOH HOH . 
O 8 HOH A 58 1458 94 HOH HOH . 
P 8 HOH P 1 101 83 HOH HOH . 
Q 8 HOH T 1 101 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 7 116.999 35.278 52.997 1 83.41 ? C1 EDO 1306 A 1 
HETATM 2 O O1 EDO . . . I 7 117.123 35.365 51.582 1 83.67 ? O1 EDO 1306 A 1 
HETATM 3 C C2 EDO . . . I 7 115.596 35.807 53.456 1 79.03 ? C2 EDO 1306 A 1 
HETATM 4 O O2 EDO . . . I 7 115.424 35.605 54.859 1 72.2 ? O2 EDO 1306 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           648 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#