data_4O47 # _model_server_result.job_id cBOzH3r9N6JUrDN2MziUKA _model_server_result.datetime_utc '2024-11-24 21:55:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4O47 # _exptl.entry_id 4O47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O47 _cell.length_a 114.872 _cell.length_b 114.872 _cell.length_c 138.971 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 78 A LEU 55 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc2 A O GLU 79 A GLU 56 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 A O ASP 81 A ASP 58 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A O PHE 84 A PHE 61 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc5 A O ALA 86 A ALA 63 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc6 A O HIS 88 A HIS 65 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc7 B O LEU 78 B LEU 55 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc8 B O GLU 79 B GLU 56 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc9 B O ASP 81 B ASP 58 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc10 B O PHE 84 B PHE 61 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc11 B O ALA 86 B ALA 63 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc12 B O HIS 88 B HIS 65 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O47 _atom_sites.fract_transf_matrix[1][1] 0.008705 _atom_sites.fract_transf_matrix[1][2] 0.005026 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 401 NA NA . D 2 NA B 1 401 401 NA NA . E 3 HOH A 1 501 502 HOH HOH . E 3 HOH A 2 502 503 HOH HOH . E 3 HOH A 3 503 504 HOH HOH . E 3 HOH A 4 504 505 HOH HOH . E 3 HOH A 5 505 506 HOH HOH . E 3 HOH A 6 506 507 HOH HOH . E 3 HOH A 7 507 508 HOH HOH . E 3 HOH A 8 508 509 HOH HOH . E 3 HOH A 9 509 510 HOH HOH . E 3 HOH A 10 510 511 HOH HOH . E 3 HOH A 11 511 512 HOH HOH . E 3 HOH A 12 512 514 HOH HOH . E 3 HOH A 13 513 515 HOH HOH . E 3 HOH A 14 514 516 HOH HOH . E 3 HOH A 15 515 517 HOH HOH . E 3 HOH A 16 516 518 HOH HOH . E 3 HOH A 17 517 519 HOH HOH . E 3 HOH A 18 518 524 HOH HOH . E 3 HOH A 19 519 526 HOH HOH . E 3 HOH A 20 520 527 HOH HOH . E 3 HOH A 21 521 532 HOH HOH . E 3 HOH A 22 522 533 HOH HOH . E 3 HOH A 23 523 544 HOH HOH . E 3 HOH A 24 524 545 HOH HOH . E 3 HOH A 25 525 546 HOH HOH . E 3 HOH A 26 526 547 HOH HOH . E 3 HOH A 27 527 548 HOH HOH . E 3 HOH A 28 528 549 HOH HOH . E 3 HOH A 29 529 550 HOH HOH . E 3 HOH A 30 530 551 HOH HOH . E 3 HOH A 31 531 558 HOH HOH . E 3 HOH A 32 532 559 HOH HOH . E 3 HOH A 33 533 560 HOH HOH . E 3 HOH A 34 534 561 HOH HOH . E 3 HOH A 35 535 562 HOH HOH . E 3 HOH A 36 536 566 HOH HOH . E 3 HOH A 37 537 567 HOH HOH . E 3 HOH A 38 538 568 HOH HOH . E 3 HOH A 39 539 569 HOH HOH . E 3 HOH A 40 540 570 HOH HOH . E 3 HOH A 41 541 571 HOH HOH . E 3 HOH A 42 542 572 HOH HOH . E 3 HOH A 43 543 573 HOH HOH . E 3 HOH A 44 544 574 HOH HOH . E 3 HOH A 45 545 575 HOH HOH . E 3 HOH A 46 546 576 HOH HOH . E 3 HOH A 47 547 585 HOH HOH . E 3 HOH A 48 548 586 HOH HOH . E 3 HOH A 49 549 587 HOH HOH . E 3 HOH A 50 550 588 HOH HOH . E 3 HOH A 51 551 589 HOH HOH . E 3 HOH A 52 552 593 HOH HOH . E 3 HOH A 53 553 594 HOH HOH . E 3 HOH A 54 554 595 HOH HOH . E 3 HOH A 55 555 596 HOH HOH . E 3 HOH A 56 556 597 HOH HOH . E 3 HOH A 57 557 598 HOH HOH . E 3 HOH A 58 558 602 HOH HOH . E 3 HOH A 59 559 603 HOH HOH . E 3 HOH A 60 560 604 HOH HOH . E 3 HOH A 61 561 606 HOH HOH . E 3 HOH A 62 562 607 HOH HOH . E 3 HOH A 63 563 608 HOH HOH . E 3 HOH A 64 564 609 HOH HOH . E 3 HOH A 65 565 610 HOH HOH . E 3 HOH A 66 566 611 HOH HOH . E 3 HOH A 67 567 612 HOH HOH . E 3 HOH A 68 568 613 HOH HOH . E 3 HOH A 69 569 614 HOH HOH . E 3 HOH A 70 570 615 HOH HOH . E 3 HOH A 71 571 617 HOH HOH . E 3 HOH A 72 572 618 HOH HOH . E 3 HOH A 73 573 620 HOH HOH . E 3 HOH A 74 574 624 HOH HOH . E 3 HOH A 75 575 628 HOH HOH . E 3 HOH A 76 576 631 HOH HOH . E 3 HOH A 77 577 632 HOH HOH . E 3 HOH A 78 578 633 HOH HOH . E 3 HOH A 79 579 634 HOH HOH . E 3 HOH A 80 580 635 HOH HOH . E 3 HOH A 81 581 636 HOH HOH . E 3 HOH A 82 582 637 HOH HOH . E 3 HOH A 83 583 643 HOH HOH . E 3 HOH A 84 584 644 HOH HOH . E 3 HOH A 85 585 645 HOH HOH . E 3 HOH A 86 586 647 HOH HOH . E 3 HOH A 87 587 648 HOH HOH . E 3 HOH A 88 588 649 HOH HOH . E 3 HOH A 89 589 653 HOH HOH . E 3 HOH A 90 590 660 HOH HOH . E 3 HOH A 91 591 661 HOH HOH . E 3 HOH A 92 592 662 HOH HOH . E 3 HOH A 93 593 663 HOH HOH . E 3 HOH A 94 594 664 HOH HOH . E 3 HOH A 95 595 667 HOH HOH . E 3 HOH A 96 596 669 HOH HOH . E 3 HOH A 97 597 671 HOH HOH . E 3 HOH A 98 598 675 HOH HOH . E 3 HOH A 99 599 677 HOH HOH . E 3 HOH A 100 600 678 HOH HOH . E 3 HOH A 101 601 679 HOH HOH . E 3 HOH A 102 602 680 HOH HOH . E 3 HOH A 103 603 681 HOH HOH . E 3 HOH A 104 604 682 HOH HOH . F 3 HOH B 1 501 501 HOH HOH . F 3 HOH B 2 502 513 HOH HOH . F 3 HOH B 3 503 520 HOH HOH . F 3 HOH B 4 504 521 HOH HOH . F 3 HOH B 5 505 522 HOH HOH . F 3 HOH B 6 506 523 HOH HOH . F 3 HOH B 7 507 525 HOH HOH . F 3 HOH B 8 508 528 HOH HOH . F 3 HOH B 9 509 529 HOH HOH . F 3 HOH B 10 510 530 HOH HOH . F 3 HOH B 11 511 531 HOH HOH . F 3 HOH B 12 512 534 HOH HOH . F 3 HOH B 13 513 535 HOH HOH . F 3 HOH B 14 514 536 HOH HOH . F 3 HOH B 15 515 537 HOH HOH . F 3 HOH B 16 516 538 HOH HOH . F 3 HOH B 17 517 539 HOH HOH . F 3 HOH B 18 518 540 HOH HOH . F 3 HOH B 19 519 541 HOH HOH . F 3 HOH B 20 520 542 HOH HOH . F 3 HOH B 21 521 543 HOH HOH . F 3 HOH B 22 522 552 HOH HOH . F 3 HOH B 23 523 553 HOH HOH . F 3 HOH B 24 524 554 HOH HOH . F 3 HOH B 25 525 555 HOH HOH . F 3 HOH B 26 526 556 HOH HOH . F 3 HOH B 27 527 557 HOH HOH . F 3 HOH B 28 528 563 HOH HOH . F 3 HOH B 29 529 564 HOH HOH . F 3 HOH B 30 530 565 HOH HOH . F 3 HOH B 31 531 577 HOH HOH . F 3 HOH B 32 532 578 HOH HOH . F 3 HOH B 33 533 579 HOH HOH . F 3 HOH B 34 534 580 HOH HOH . F 3 HOH B 35 535 581 HOH HOH . F 3 HOH B 36 536 582 HOH HOH . F 3 HOH B 37 537 583 HOH HOH . F 3 HOH B 38 538 584 HOH HOH . F 3 HOH B 39 539 590 HOH HOH . F 3 HOH B 40 540 591 HOH HOH . F 3 HOH B 41 541 592 HOH HOH . F 3 HOH B 42 542 599 HOH HOH . F 3 HOH B 43 543 600 HOH HOH . F 3 HOH B 44 544 601 HOH HOH . F 3 HOH B 45 545 605 HOH HOH . F 3 HOH B 46 546 616 HOH HOH . F 3 HOH B 47 547 619 HOH HOH . F 3 HOH B 48 548 621 HOH HOH . F 3 HOH B 49 549 622 HOH HOH . F 3 HOH B 50 550 623 HOH HOH . F 3 HOH B 51 551 625 HOH HOH . F 3 HOH B 52 552 626 HOH HOH . F 3 HOH B 53 553 627 HOH HOH . F 3 HOH B 54 554 629 HOH HOH . F 3 HOH B 55 555 630 HOH HOH . F 3 HOH B 56 556 639 HOH HOH . F 3 HOH B 57 557 640 HOH HOH . F 3 HOH B 58 558 641 HOH HOH . F 3 HOH B 59 559 646 HOH HOH . F 3 HOH B 60 560 650 HOH HOH . F 3 HOH B 61 561 651 HOH HOH . F 3 HOH B 62 562 654 HOH HOH . F 3 HOH B 63 563 655 HOH HOH . F 3 HOH B 64 564 656 HOH HOH . F 3 HOH B 65 565 657 HOH HOH . F 3 HOH B 66 566 658 HOH HOH . F 3 HOH B 67 567 659 HOH HOH . F 3 HOH B 68 568 665 HOH HOH . F 3 HOH B 69 569 670 HOH HOH . F 3 HOH B 70 570 673 HOH HOH . F 3 HOH B 71 571 674 HOH HOH . F 3 HOH B 72 572 676 HOH HOH . F 3 HOH B 73 573 683 HOH HOH . F 3 HOH B 74 574 684 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 44.279 _atom_site.Cartn_y -30.761 _atom_site.Cartn_z -8.571 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 497 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #