data_4O4X
#
_model_server_result.job_id            vb6d72Pf-0b3BiGidHwLiA 
_model_server_result.datetime_utc      '2024-12-26 13:03:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o4x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":604}' 
#
_entry.id    4O4X 
#
_exptl.entry_id    4O4X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.42 
_cell.angle_gamma         90 
_cell.entry_id            4O4X 
_cell.length_a            239.89 
_cell.length_b            42.24 
_cell.length_c            114.02 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O4X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,W 1 1 
B,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 J N N 
? 2 K N N 
? 2 U N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 351 A CYS 356 1_555 A SG CYS 352 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 351 B CYS 356 1_555 B SG CYS 352 B CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OD1 ASN 285 A ASN 290 1_555 L NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4O4X 
_atom_sites.fract_transf_matrix[1][1]    0.004169 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000176 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008778 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 601 538 GOL GOL . 
D 2 GOL A 1 602 539 GOL GOL . 
E 2 GOL A 1 603 540 GOL GOL . 
F 2 GOL A 1 604 541 GOL GOL . 
G 2 GOL A 1 605 542 GOL GOL . 
H 3 SO4 A 1 606 543 SO4 SO4 . 
I 3 SO4 A 1 607 544 SO4 SO4 . 
J 2 GOL A 1 608 545 GOL GOL . 
K 2 GOL A 1 609 546 GOL GOL . 
L 4 NA A 1 610 547 NA NA . 
M 3 SO4 A 1 611 548 SO4 SO4 . 
N 3 SO4 A 1 612 549 SO4 SO4 . 
O 3 SO4 B 1 601 538 SO4 SO4 . 
P 3 SO4 B 1 602 539 SO4 SO4 . 
Q 3 SO4 B 1 603 540 SO4 SO4 . 
R 3 SO4 B 1 604 541 SO4 SO4 . 
S 3 SO4 B 1 605 542 SO4 SO4 . 
T 3 SO4 B 1 606 543 SO4 SO4 . 
U 2 GOL B 1 607 544 GOL GOL . 
V 2 GOL B 1 608 545 GOL GOL . 
W 5 HOH A 1 701 550 HOH HOH . 
W 5 HOH A 2 702 551 HOH HOH . 
W 5 HOH A 3 703 552 HOH HOH . 
W 5 HOH A 4 704 553 HOH HOH . 
W 5 HOH A 5 705 554 HOH HOH . 
W 5 HOH A 6 706 555 HOH HOH . 
W 5 HOH A 7 707 556 HOH HOH . 
W 5 HOH A 8 708 557 HOH HOH . 
W 5 HOH A 9 709 558 HOH HOH . 
W 5 HOH A 10 710 559 HOH HOH . 
W 5 HOH A 11 711 560 HOH HOH . 
W 5 HOH A 12 712 561 HOH HOH . 
W 5 HOH A 13 713 562 HOH HOH . 
W 5 HOH A 14 714 563 HOH HOH . 
W 5 HOH A 15 715 564 HOH HOH . 
W 5 HOH A 16 716 566 HOH HOH . 
W 5 HOH A 17 717 567 HOH HOH . 
W 5 HOH A 18 718 568 HOH HOH . 
W 5 HOH A 19 719 569 HOH HOH . 
W 5 HOH A 20 720 570 HOH HOH . 
W 5 HOH A 21 721 571 HOH HOH . 
W 5 HOH A 22 722 572 HOH HOH . 
W 5 HOH A 23 723 573 HOH HOH . 
W 5 HOH A 24 724 574 HOH HOH . 
W 5 HOH A 25 725 575 HOH HOH . 
W 5 HOH A 26 726 576 HOH HOH . 
W 5 HOH A 27 727 577 HOH HOH . 
W 5 HOH A 28 728 578 HOH HOH . 
W 5 HOH A 29 729 579 HOH HOH . 
W 5 HOH A 30 730 580 HOH HOH . 
W 5 HOH A 31 731 581 HOH HOH . 
W 5 HOH A 32 732 582 HOH HOH . 
W 5 HOH A 33 733 583 HOH HOH . 
W 5 HOH A 34 734 584 HOH HOH . 
W 5 HOH A 35 735 585 HOH HOH . 
W 5 HOH A 36 736 586 HOH HOH . 
W 5 HOH A 37 737 587 HOH HOH . 
X 5 HOH B 1 701 546 HOH HOH . 
X 5 HOH B 2 702 547 HOH HOH . 
X 5 HOH B 3 703 548 HOH HOH . 
X 5 HOH B 4 704 549 HOH HOH . 
X 5 HOH B 5 705 550 HOH HOH . 
X 5 HOH B 6 706 551 HOH HOH . 
X 5 HOH B 7 707 552 HOH HOH . 
X 5 HOH B 8 708 553 HOH HOH . 
X 5 HOH B 9 709 554 HOH HOH . 
X 5 HOH B 10 710 555 HOH HOH . 
X 5 HOH B 11 711 556 HOH HOH . 
X 5 HOH B 12 712 557 HOH HOH . 
X 5 HOH B 13 713 558 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 2 33.41 108.772 164.689 1 50.95 ? C1 GOL 604 A 1 
HETATM 2 O O1 GOL . . . F 2 34.425 109.243 165.571 1 51.49 ? O1 GOL 604 A 1 
HETATM 3 C C2 GOL . . . F 2 32.651 107.618 165.324 1 66.86 ? C2 GOL 604 A 1 
HETATM 4 O O2 GOL . . . F 2 33.042 106.375 164.741 1 65.23 ? O2 GOL 604 A 1 
HETATM 5 C C3 GOL . . . F 2 31.169 107.773 165.064 1 48.96 ? C3 GOL 604 A 1 
HETATM 6 O O3 GOL . . . F 2 30.712 106.485 164.69 1 57.19 ? O3 GOL 604 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#