data_4O4Z # _model_server_result.job_id nyJQEZjJ-71JabvFLRhTAA _model_server_result.datetime_utc '2024-11-14 04:32:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4O4Z # _exptl.entry_id 4O4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O4Z _cell.length_a 89.275 _cell.length_b 89.275 _cell.length_c 114.765 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 67 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 A NE2 HIS 99 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4O4Z _atom_sites.fract_transf_matrix[1][1] 0.011201 _atom_sites.fract_transf_matrix[1][2] 0.006467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 160 HEM HEM . C 3 SO4 A 1 202 170 SO4 SO4 . D 4 N2O A 1 203 181 N2O N2O . E 4 N2O A 1 204 182 N2O N2O . F 4 N2O A 1 205 183 N2O N2O . G 4 N2O A 1 206 184 N2O N2O . H 4 N2O A 1 207 186 N2O N2O . I 5 HOH A 1 301 201 HOH HOH . I 5 HOH A 2 302 202 HOH HOH . I 5 HOH A 3 303 203 HOH HOH . I 5 HOH A 4 304 204 HOH HOH . I 5 HOH A 5 305 205 HOH HOH . I 5 HOH A 6 306 206 HOH HOH . I 5 HOH A 7 307 207 HOH HOH . I 5 HOH A 8 308 208 HOH HOH . I 5 HOH A 9 309 209 HOH HOH . I 5 HOH A 10 310 210 HOH HOH . I 5 HOH A 11 311 211 HOH HOH . I 5 HOH A 12 312 212 HOH HOH . I 5 HOH A 13 313 213 HOH HOH . I 5 HOH A 14 314 214 HOH HOH . I 5 HOH A 15 315 215 HOH HOH . I 5 HOH A 16 316 216 HOH HOH . I 5 HOH A 17 317 217 HOH HOH . I 5 HOH A 18 318 218 HOH HOH . I 5 HOH A 19 319 219 HOH HOH . I 5 HOH A 20 320 220 HOH HOH . I 5 HOH A 21 321 221 HOH HOH . I 5 HOH A 22 322 222 HOH HOH . I 5 HOH A 23 323 223 HOH HOH . I 5 HOH A 24 324 224 HOH HOH . I 5 HOH A 25 325 225 HOH HOH . I 5 HOH A 26 326 226 HOH HOH . I 5 HOH A 27 327 227 HOH HOH . I 5 HOH A 28 328 228 HOH HOH . I 5 HOH A 29 329 229 HOH HOH . I 5 HOH A 30 330 230 HOH HOH . I 5 HOH A 31 331 231 HOH HOH . I 5 HOH A 32 332 232 HOH HOH . I 5 HOH A 33 333 233 HOH HOH . I 5 HOH A 34 334 234 HOH HOH . I 5 HOH A 35 335 235 HOH HOH . I 5 HOH A 36 336 236 HOH HOH . I 5 HOH A 37 337 237 HOH HOH . I 5 HOH A 38 338 238 HOH HOH . I 5 HOH A 39 339 240 HOH HOH . I 5 HOH A 40 340 241 HOH HOH . I 5 HOH A 41 341 242 HOH HOH . I 5 HOH A 42 342 245 HOH HOH . I 5 HOH A 43 343 246 HOH HOH . I 5 HOH A 44 344 247 HOH HOH . I 5 HOH A 45 345 248 HOH HOH . I 5 HOH A 46 346 252 HOH HOH . I 5 HOH A 47 347 253 HOH HOH . I 5 HOH A 48 348 255 HOH HOH . I 5 HOH A 49 349 256 HOH HOH . I 5 HOH A 50 350 257 HOH HOH . I 5 HOH A 51 351 258 HOH HOH . I 5 HOH A 52 352 259 HOH HOH . I 5 HOH A 53 353 260 HOH HOH . I 5 HOH A 54 354 261 HOH HOH . I 5 HOH A 55 355 263 HOH HOH . I 5 HOH A 56 356 264 HOH HOH . I 5 HOH A 57 357 265 HOH HOH . I 5 HOH A 58 358 266 HOH HOH . I 5 HOH A 59 359 270 HOH HOH . I 5 HOH A 60 360 272 HOH HOH . I 5 HOH A 61 361 275 HOH HOH . I 5 HOH A 62 362 281 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 19.646 59.062 36.714 1 15.66 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 15.125 58.205 34.872 1 16.75 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 15.813 53.418 35.594 1 17.06 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 20.566 54.234 36.745 1 15.9 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 18.349 59.22 36.116 1 16.1 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 17.846 60.55 35.744 1 17.06 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 16.516 60.29 35.203 1 17.12 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 16.353 58.828 35.294 1 16.37 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 15.534 61.283 34.654 1 19.11 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 18.532 61.877 35.864 1 17.51 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 19.031 62.348 34.501 1 17.87 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 20.16 61.467 34.044 1 19.73 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 21.144 61.267 34.824 1 19.84 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 20.07 60.927 32.92 1 19.25 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 14.925 56.79 34.935 1 16.78 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 13.622 56.194 34.578 1 17.86 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 13.87 54.788 34.818 1 18.45 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 15.238 54.703 35.266 1 17.85 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 12.383 56.912 34.13 1 18.38 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 12.958 53.604 34.622 1 18.73 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 11.843 53.526 35.303 1 25.81 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 17.169 53.205 36.005 1 16.86 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 17.722 51.867 36.297 1 18.86 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 19.12 52.146 36.625 1 17.94 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 19.308 53.587 36.509 1 15.64 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 16.994 50.537 36.253 1 20.59 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 20.214 51.224 36.989 1 19.8 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 19.988 49.995 37.417 1 27.16 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 20.645 55.674 36.829 1 15.32 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 21.913 56.27 37.291 1 16.12 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 21.636 57.673 37.288 1 15.64 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 20.278 57.773 36.82 1 16.04 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 23.168 55.53 37.631 1 16.28 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 22.577 58.772 37.707 1 17.28 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 22.253 58.96 39.204 1 21.13 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 23.101 60.085 39.807 1 24.29 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 22.632 61.239 39.858 1 28 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 24.221 59.771 40.204 1 26.6 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 17.435 58.103 35.95 1 15.92 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 15.847 55.919 35.313 1 15.27 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 18.112 54.32 36.209 1 15.58 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 19.7 56.582 36.584 1 14.34 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 17.801 56.204 35.899 1 14.86 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #