data_4O55
#
_model_server_result.job_id            72cgSzZSiftgaDIDetmYxg 
_model_server_result.datetime_utc      '2025-01-11 02:49:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4O55 
#
_exptl.entry_id    4O55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              463.956 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-tert-butoxy[6-(5-chloro-1H-benzimidazol-2-yl)-2,5-dimethyl-4-phenylpyridin-3-yl]ethanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4O55 
_cell.length_a            71.73 
_cell.length_b            71.73 
_cell.length_c            65.943 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -43.962 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 15 A ASP 64 1_555 A N CAF 16 A CAF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? 
covale ? covale2 A C CAF 16 A CAF 65 1_555 A N THR 17 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? 
covale ? covale3 A C ALA 80 A ALA 129 1_555 A N CAF 81 A CAF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.684 ? 
covale ? covale4 A C CAF 81 A CAF 130 1_555 A N TRP 82 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? 
#
_chem_comp.formula           'C26 H26 Cl N3 O3' 
_chem_comp.formula_weight    463.956 
_chem_comp.id                LF9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-tert-butoxy[6-(5-chloro-1H-benzimidazol-2-yl)-2,5-dimethyl-4-phenylpyridin-3-yl]ethanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O18 C16 LF9 doub 216 n n 
O19 C16 LF9 sing 217 n n 
C11 C12 LF9 doub 218 n y 
C11 C10 LF9 sing 219 n y 
C16 C15 LF9 sing 220 n n 
C12 C7 LF9 sing 221 n y 
C10 C9 LF9 doub 222 n y 
C15 C4 LF9 sing 223 n n 
C15 O17 LF9 sing 224 n n 
C7 C3 LF9 sing 225 n n 
C7 C8 LF9 doub 226 n y 
C4 C3 LF9 doub 227 n y 
C4 C5 LF9 sing 228 n y 
C3 C2 LF9 sing 229 n y 
C14 C5 LF9 sing 230 n n 
C5 N1 LF9 doub 231 n y 
C9 C8 LF9 sing 232 n y 
N2 C26 LF9 sing 233 n y 
N2 C24 LF9 sing 234 n y 
C2 C13 LF9 sing 235 n n 
C2 C1 LF9 doub 236 n y 
O17 C20 LF9 sing 237 n n 
N1 C1 LF9 sing 238 n y 
C1 C24 LF9 sing 239 n n 
C29 C26 LF9 doub 240 n y 
C29 C31 LF9 sing 241 n y 
C26 C27 LF9 sing 242 n y 
C24 N3 LF9 doub 243 n y 
C23 C20 LF9 sing 244 n n 
C31 C32 LF9 doub 245 n y 
C20 C22 LF9 sing 246 n n 
C20 C21 LF9 sing 247 n n 
C27 N3 LF9 sing 248 n y 
C27 C30 LF9 doub 249 n y 
C32 C30 LF9 sing 250 n y 
C32 CL LF9 sing 251 n n 
C8 H1 LF9 sing 252 n n 
C9 H2 LF9 sing 253 n n 
C10 H3 LF9 sing 254 n n 
C11 H4 LF9 sing 255 n n 
C12 H5 LF9 sing 256 n n 
C13 H6 LF9 sing 257 n n 
C13 H7 LF9 sing 258 n n 
C13 H8 LF9 sing 259 n n 
C14 H9 LF9 sing 260 n n 
C14 H10 LF9 sing 261 n n 
C14 H11 LF9 sing 262 n n 
C15 H12 LF9 sing 263 n n 
O19 H13 LF9 sing 264 n n 
C21 H14 LF9 sing 265 n n 
C21 H15 LF9 sing 266 n n 
C21 H16 LF9 sing 267 n n 
C22 H17 LF9 sing 268 n n 
C22 H18 LF9 sing 269 n n 
C22 H19 LF9 sing 270 n n 
C23 H20 LF9 sing 271 n n 
C23 H21 LF9 sing 272 n n 
C23 H22 LF9 sing 273 n n 
N2 H23 LF9 sing 274 n n 
C29 H25 LF9 sing 275 n n 
C30 H26 LF9 sing 276 n n 
C31 H27 LF9 sing 277 n n 
#
_atom_sites.entry_id                     4O55 
_atom_sites.fract_transf_matrix[1][1]    0.013941 
_atom_sites.fract_transf_matrix[1][2]    0.008049 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015165 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LF9 A 1 301 1 LF9 LF9 . 
C 3 SO4 A 1 302 1 SO4 SO4 . 
D 3 SO4 A 1 303 2 SO4 SO4 . 
E 3 SO4 A 1 304 3 SO4 SO4 . 
F 4 HOH A 1 401 1 HOH HOH . 
F 4 HOH A 2 402 2 HOH HOH . 
F 4 HOH A 3 403 3 HOH HOH . 
F 4 HOH A 4 404 4 HOH HOH . 
F 4 HOH A 5 405 5 HOH HOH . 
F 4 HOH A 6 406 6 HOH HOH . 
F 4 HOH A 7 407 7 HOH HOH . 
F 4 HOH A 8 408 8 HOH HOH . 
F 4 HOH A 9 409 9 HOH HOH . 
F 4 HOH A 10 410 10 HOH HOH . 
F 4 HOH A 11 411 11 HOH HOH . 
F 4 HOH A 12 412 12 HOH HOH . 
F 4 HOH A 13 413 13 HOH HOH . 
F 4 HOH A 14 414 14 HOH HOH . 
F 4 HOH A 15 415 15 HOH HOH . 
F 4 HOH A 16 416 16 HOH HOH . 
F 4 HOH A 17 417 17 HOH HOH . 
F 4 HOH A 18 418 18 HOH HOH . 
F 4 HOH A 19 419 19 HOH HOH . 
F 4 HOH A 20 420 20 HOH HOH . 
F 4 HOH A 21 421 21 HOH HOH . 
F 4 HOH A 22 422 22 HOH HOH . 
F 4 HOH A 23 423 23 HOH HOH . 
F 4 HOH A 24 424 24 HOH HOH . 
F 4 HOH A 25 425 25 HOH HOH . 
F 4 HOH A 26 426 26 HOH HOH . 
F 4 HOH A 27 427 27 HOH HOH . 
F 4 HOH A 28 428 28 HOH HOH . 
F 4 HOH A 29 429 29 HOH HOH . 
F 4 HOH A 30 430 30 HOH HOH . 
F 4 HOH A 31 431 31 HOH HOH . 
F 4 HOH A 32 432 32 HOH HOH . 
F 4 HOH A 33 433 33 HOH HOH . 
F 4 HOH A 34 434 34 HOH HOH . 
F 4 HOH A 35 435 35 HOH HOH . 
F 4 HOH A 36 436 36 HOH HOH . 
F 4 HOH A 37 437 37 HOH HOH . 
F 4 HOH A 38 438 38 HOH HOH . 
F 4 HOH A 39 439 39 HOH HOH . 
F 4 HOH A 40 440 40 HOH HOH . 
F 4 HOH A 41 441 41 HOH HOH . 
F 4 HOH A 42 442 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LF9 . . . B 2 -37.565 32.579 -28.033 1 71 ? C1 LF9 301 A 1 
HETATM 2 C C2 LF9 . . . B 2 -36.775 31.451 -28.33 1 58.93 ? C2 LF9 301 A 1 
HETATM 3 C C3 LF9 . . . B 2 -35.42 31.633 -28.62 1 53.27 ? C3 LF9 301 A 1 
HETATM 4 C C4 LF9 . . . B 2 -34.884 32.949 -28.613 1 56.36 ? C4 LF9 301 A 1 
HETATM 5 C C5 LF9 . . . B 2 -35.722 34.039 -28.3 1 54.15 ? C5 LF9 301 A 1 
HETATM 6 N N1 LF9 . . . B 2 -37.017 33.816 -28.031 1 62.46 ? N1 LF9 301 A 1 
HETATM 7 C C7 LF9 . . . B 2 -34.572 30.442 -28.925 1 51.8 ? C7 LF9 301 A 1 
HETATM 8 C C8 LF9 . . . B 2 -34.112 29.606 -27.897 1 50 ? C8 LF9 301 A 1 
HETATM 9 C C9 LF9 . . . B 2 -33.295 28.505 -28.188 1 46.15 ? C9 LF9 301 A 1 
HETATM 10 C C10 LF9 . . . B 2 -32.938 28.202 -29.504 1 44.71 ? C10 LF9 301 A 1 
HETATM 11 C C11 LF9 . . . B 2 -33.4 29.04 -30.522 1 51.28 ? C11 LF9 301 A 1 
HETATM 12 C C12 LF9 . . . B 2 -34.214 30.153 -30.236 1 53.45 ? C12 LF9 301 A 1 
HETATM 13 C C13 LF9 . . . B 2 -37.415 30.074 -28.332 1 49.49 ? C13 LF9 301 A 1 
HETATM 14 C C14 LF9 . . . B 2 -35.301 35.487 -28.281 1 55.61 ? C14 LF9 301 A 1 
HETATM 15 C C15 LF9 . . . B 2 -33.433 33.199 -28.922 1 59.64 ? C15 LF9 301 A 1 
HETATM 16 C C16 LF9 . . . B 2 -33.25 33.718 -30.341 1 58.74 ? C16 LF9 301 A 1 
HETATM 17 O O17 LF9 . . . B 2 -32.785 34.099 -27.992 1 51.18 ? O17 LF9 301 A 1 
HETATM 18 O O18 LF9 . . . B 2 -34.026 33.301 -31.23 1 58 ? O18 LF9 301 A 1 
HETATM 19 O O19 LF9 . . . B 2 -32.303 34.494 -30.595 1 53.01 ? O19 LF9 301 A 1 
HETATM 20 C C20 LF9 . . . B 2 -32.388 33.554 -26.718 1 50.52 ? C20 LF9 301 A 1 
HETATM 21 C C21 LF9 . . . B 2 -33.55 33.177 -25.826 1 42.91 ? C21 LF9 301 A 1 
HETATM 22 C C22 LF9 . . . B 2 -31.641 34.701 -26.044 1 46.72 ? C22 LF9 301 A 1 
HETATM 23 C C23 LF9 . . . B 2 -31.548 32.293 -26.861 1 44.89 ? C23 LF9 301 A 1 
HETATM 24 C C24 LF9 . . . B 2 -39.022 32.422 -27.723 1 79.96 ? C24 LF9 301 A 1 
HETATM 25 N N2 LF9 . . . B 2 -40.012 32.367 -28.627 1 91.17 ? N2 LF9 301 A 1 
HETATM 26 C C26 LF9 . . . B 2 -41.188 32.193 -27.983 1 115.49 ? C26 LF9 301 A 1 
HETATM 27 C C27 LF9 . . . B 2 -40.889 32.128 -26.628 1 117.7 ? C27 LF9 301 A 1 
HETATM 28 N N3 LF9 . . . B 2 -39.555 32.27 -26.502 1 100.88 ? N3 LF9 301 A 1 
HETATM 29 C C29 LF9 . . . B 2 -42.521 32.073 -28.416 1 117.1 ? C29 LF9 301 A 1 
HETATM 30 C C30 LF9 . . . B 2 -41.916 31.945 -25.695 1 136.23 ? C30 LF9 301 A 1 
HETATM 31 C C31 LF9 . . . B 2 -43.547 31.885 -27.481 1 128.44 ? C31 LF9 301 A 1 
HETATM 32 C C32 LF9 . . . B 2 -43.251 31.817 -26.108 1 140.19 ? C32 LF9 301 A 1 
HETATM 33 CL CL LF9 . . . B 2 -44.554 31.57 -24.87 1 151.09 ? CL LF9 301 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           33 
#