data_4O58
#
_model_server_result.job_id            WPELU2n3eYxokMRojuctBw 
_model_server_result.datetime_utc      '2024-12-03 20:10:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":303}' 
#
_entry.id    4O58 
#
_exptl.entry_id    4O58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4O58 
_cell.length_a            99.101 
_cell.length_b            99.101 
_cell.length_c            336.65 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_875 -y+3,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 198.202 171.647967 0 
3 'crystal symmetry operation' 3_685 -x+y+1,-x+3,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -49.5505 257.471951 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 N N N 
? 9 U N N 
? 9 V N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
5 oligosaccharide 
6 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
4 ? 6 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
5 ? 6 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
5 n E NAG 1 C 1 NAG A 501 NAG 
5 n E NAG 2 C 2 NAG A 502 NAG 
6 n F NAG 1 D 1 NAG A 801 NAG 
6 n F NAG 2 D 2 NAG A 802 NAG 
6 n F BMA 3 D 3 BMA A 803 BMA 
6 n F MAN 4 D 4 MAN A 804 MAN 
6 n F MAN 5 D 5 MAN A 805 MAN 
5 n G NAG 1 E 1 NAG A 901 NAG 
5 n G NAG 2 E 2 NAG A 902 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf2 A SG CYS 46 A CYS 52 1_555 A SG CYS 271 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 A SG CYS 58 A CYS 64 1_555 A SG CYS 70 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf4 A SG CYS 91 A CYS 97 1_555 A SG CYS 133 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf5 A SG CYS 275 A CYS 281 1_555 A SG CYS 299 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
disulf ? disulf7 C SG CYS 22 L CYS 23 1_555 C SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf8 C SG CYS 138 L CYS 134 1_555 C SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 D SG CYS 22 H CYS 22 1_555 D SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf10 D SG CYS 106 H CYS 100 1_555 D SG CYS 109 H CYS 100 1_555 C ? ? F ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf11 D SG CYS 158 H CYS 140 1_555 D SG CYS 214 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 32 A ASN 38 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 57 A ASN 63 1_555 H C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale3 A ND2 ASN 159 A ASN 165 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale4 A ND2 ASN 279 A ASN 285 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale5 B ND2 ASN 154 B ASN 154 1_555 O C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale6 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale7 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale9 F O3 BMA . D BMA 3 1_555 F C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale10 F O6 BMA . D BMA 3 1_555 F C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale11 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 315 n n 
C1 C2 PEG sing 316 n n 
C1 H11 PEG sing 317 n n 
C1 H12 PEG sing 318 n n 
O1 HO1 PEG sing 319 n n 
C2 O2 PEG sing 320 n n 
C2 H21 PEG sing 321 n n 
C2 H22 PEG sing 322 n n 
O2 C3 PEG sing 323 n n 
C3 C4 PEG sing 324 n n 
C3 H31 PEG sing 325 n n 
C3 H32 PEG sing 326 n n 
C4 O4 PEG sing 327 n n 
C4 H41 PEG sing 328 n n 
C4 H42 PEG sing 329 n n 
O4 HO4 PEG sing 330 n n 
#
_atom_sites.entry_id                     4O58 
_atom_sites.fract_transf_matrix[1][1]    0.010091 
_atom_sites.fract_transf_matrix[1][2]    0.005826 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 7 NAG A 1 503 601 NAG NAG . 
I 8 SO4 A 1 511 3 SO4 SO4 . 
J 8 SO4 A 1 512 4 SO4 SO4 . 
K 8 SO4 A 1 513 5 SO4 SO4 . 
L 8 SO4 A 1 514 7 SO4 SO4 . 
M 8 SO4 A 1 515 14 SO4 SO4 . 
N 9 PEG A 1 516 1 PEG PEG . 
O 7 NAG B 1 201 201 NAG NAG . 
P 8 SO4 B 1 202 1 SO4 SO4 . 
Q 8 SO4 B 1 203 2 SO4 SO4 . 
R 8 SO4 B 1 204 8 SO4 SO4 . 
S 8 SO4 L 1 301 6 SO4 SO4 . 
T 8 SO4 L 1 302 12 SO4 SO4 . 
U 9 PEG L 1 303 3 PEG PEG . 
V 9 PEG L 1 304 4 PEG PEG . 
W 8 SO4 H 1 301 9 SO4 SO4 . 
X 8 SO4 H 1 302 10 SO4 SO4 . 
Y 8 SO4 H 1 303 11 SO4 SO4 . 
Z 8 SO4 H 1 304 13 SO4 SO4 . 
AA 10 HOH A 1 601 1 HOH HOH . 
AA 10 HOH A 2 602 2 HOH HOH . 
AA 10 HOH A 3 603 3 HOH HOH . 
AA 10 HOH A 4 604 4 HOH HOH . 
AA 10 HOH A 5 605 5 HOH HOH . 
AA 10 HOH A 6 606 6 HOH HOH . 
AA 10 HOH A 7 607 8 HOH HOH . 
AA 10 HOH A 8 608 9 HOH HOH . 
AA 10 HOH A 9 609 10 HOH HOH . 
AA 10 HOH A 10 610 11 HOH HOH . 
AA 10 HOH A 11 611 12 HOH HOH . 
AA 10 HOH A 12 612 13 HOH HOH . 
AA 10 HOH A 13 613 14 HOH HOH . 
AA 10 HOH A 14 614 16 HOH HOH . 
AA 10 HOH A 15 615 17 HOH HOH . 
AA 10 HOH A 16 616 18 HOH HOH . 
AA 10 HOH A 17 617 19 HOH HOH . 
AA 10 HOH A 18 618 20 HOH HOH . 
AA 10 HOH A 19 619 21 HOH HOH . 
AA 10 HOH A 20 620 22 HOH HOH . 
AA 10 HOH A 21 621 23 HOH HOH . 
AA 10 HOH A 22 622 24 HOH HOH . 
AA 10 HOH A 23 623 38 HOH HOH . 
AA 10 HOH A 24 624 48 HOH HOH . 
AA 10 HOH A 25 625 49 HOH HOH . 
AA 10 HOH A 26 626 50 HOH HOH . 
AA 10 HOH A 27 627 52 HOH HOH . 
AA 10 HOH A 28 628 53 HOH HOH . 
AA 10 HOH A 29 629 55 HOH HOH . 
AA 10 HOH A 30 630 56 HOH HOH . 
AA 10 HOH A 31 631 58 HOH HOH . 
AA 10 HOH A 32 632 59 HOH HOH . 
AA 10 HOH A 33 633 60 HOH HOH . 
AA 10 HOH A 34 634 68 HOH HOH . 
AA 10 HOH A 35 635 69 HOH HOH . 
AA 10 HOH A 36 636 70 HOH HOH . 
AA 10 HOH A 37 637 71 HOH HOH . 
AA 10 HOH A 38 638 73 HOH HOH . 
AA 10 HOH A 39 639 77 HOH HOH . 
AA 10 HOH A 40 640 78 HOH HOH . 
AA 10 HOH A 41 641 79 HOH HOH . 
AA 10 HOH A 42 642 82 HOH HOH . 
BA 10 HOH B 1 301 25 HOH HOH . 
BA 10 HOH B 2 302 26 HOH HOH . 
BA 10 HOH B 3 303 27 HOH HOH . 
BA 10 HOH B 4 304 28 HOH HOH . 
BA 10 HOH B 5 305 29 HOH HOH . 
BA 10 HOH B 6 306 30 HOH HOH . 
BA 10 HOH B 7 307 31 HOH HOH . 
BA 10 HOH B 8 308 32 HOH HOH . 
BA 10 HOH B 9 309 34 HOH HOH . 
BA 10 HOH B 10 310 35 HOH HOH . 
BA 10 HOH B 11 311 36 HOH HOH . 
BA 10 HOH B 12 312 37 HOH HOH . 
BA 10 HOH B 13 313 57 HOH HOH . 
BA 10 HOH B 14 314 72 HOH HOH . 
BA 10 HOH B 15 315 80 HOH HOH . 
BA 10 HOH B 16 316 81 HOH HOH . 
CA 10 HOH L 1 401 51 HOH HOH . 
CA 10 HOH L 2 402 64 HOH HOH . 
CA 10 HOH L 3 403 65 HOH HOH . 
CA 10 HOH L 4 404 76 HOH HOH . 
DA 10 HOH H 1 401 39 HOH HOH . 
DA 10 HOH H 2 402 40 HOH HOH . 
DA 10 HOH H 3 403 41 HOH HOH . 
DA 10 HOH H 4 404 42 HOH HOH . 
DA 10 HOH H 5 405 43 HOH HOH . 
DA 10 HOH H 6 406 44 HOH HOH . 
DA 10 HOH H 7 407 54 HOH HOH . 
DA 10 HOH H 8 408 61 HOH HOH . 
DA 10 HOH H 9 409 62 HOH HOH . 
DA 10 HOH H 10 410 63 HOH HOH . 
DA 10 HOH H 11 411 66 HOH HOH . 
DA 10 HOH H 12 412 67 HOH HOH . 
DA 10 HOH H 13 413 75 HOH HOH . 
DA 10 HOH H 14 414 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . U 9 10.6 105.351 125.989 1 59.35 ? C1 PEG 303 L 1 
HETATM 2 O O1 PEG . . . U 9 9.39 105.354 126.76 1 60.86 ? O1 PEG 303 L 1 
HETATM 3 C C2 PEG . . . U 9 11.638 106.247 126.653 1 60.53 ? C2 PEG 303 L 1 
HETATM 4 O O2 PEG . . . U 9 12.097 105.635 127.85 1 65.54 ? O2 PEG 303 L 1 
HETATM 5 C C3 PEG . . . U 9 12.777 106.571 128.683 1 68.72 ? C3 PEG 303 L 1 
HETATM 6 C C4 PEG . . . U 9 13.504 105.817 129.793 1 71.59 ? C4 PEG 303 L 1 
HETATM 7 O O4 PEG . . . U 9 14.339 106.726 130.519 1 73.56 ? O4 PEG 303 L 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#