data_4O5B # _model_server_result.job_id TsGeo_vx5TC-w6-gcF2XyA _model_server_result.datetime_utc '2024-11-15 13:54:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4O5B # _exptl.entry_id 4O5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.956 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-tert-butoxy[6-(5-chloro-1H-benzimidazol-2-yl)-2,5-dimethyl-4-phenylpyridin-3-yl]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O5B _cell.length_a 72.049 _cell.length_b 72.049 _cell.length_c 66.181 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.120667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 15 A ASP 64 1_555 A N CAF 16 A CAF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? covale ? covale2 A C CAF 16 A CAF 65 1_555 A N THR 17 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale3 A C ALA 80 A ALA 129 1_555 A N CAF 81 A CAF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale4 A C CAF 81 A CAF 130 1_555 A N TRP 82 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'C26 H26 Cl N3 O3' _chem_comp.formula_weight 463.956 _chem_comp.id LF9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-tert-butoxy[6-(5-chloro-1H-benzimidazol-2-yl)-2,5-dimethyl-4-phenylpyridin-3-yl]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C16 LF9 doub 216 n n O19 C16 LF9 sing 217 n n C11 C12 LF9 doub 218 n y C11 C10 LF9 sing 219 n y C16 C15 LF9 sing 220 n n C12 C7 LF9 sing 221 n y C10 C9 LF9 doub 222 n y C15 C4 LF9 sing 223 n n C15 O17 LF9 sing 224 n n C7 C3 LF9 sing 225 n n C7 C8 LF9 doub 226 n y C4 C3 LF9 doub 227 n y C4 C5 LF9 sing 228 n y C3 C2 LF9 sing 229 n y C14 C5 LF9 sing 230 n n C5 N1 LF9 doub 231 n y C9 C8 LF9 sing 232 n y N2 C26 LF9 sing 233 n y N2 C24 LF9 sing 234 n y C2 C13 LF9 sing 235 n n C2 C1 LF9 doub 236 n y O17 C20 LF9 sing 237 n n N1 C1 LF9 sing 238 n y C1 C24 LF9 sing 239 n n C29 C26 LF9 doub 240 n y C29 C31 LF9 sing 241 n y C26 C27 LF9 sing 242 n y C24 N3 LF9 doub 243 n y C23 C20 LF9 sing 244 n n C31 C32 LF9 doub 245 n y C20 C22 LF9 sing 246 n n C20 C21 LF9 sing 247 n n C27 N3 LF9 sing 248 n y C27 C30 LF9 doub 249 n y C32 C30 LF9 sing 250 n y C32 CL LF9 sing 251 n n C8 H1 LF9 sing 252 n n C9 H2 LF9 sing 253 n n C10 H3 LF9 sing 254 n n C11 H4 LF9 sing 255 n n C12 H5 LF9 sing 256 n n C13 H6 LF9 sing 257 n n C13 H7 LF9 sing 258 n n C13 H8 LF9 sing 259 n n C14 H9 LF9 sing 260 n n C14 H10 LF9 sing 261 n n C14 H11 LF9 sing 262 n n C15 H12 LF9 sing 263 n n O19 H13 LF9 sing 264 n n C21 H14 LF9 sing 265 n n C21 H15 LF9 sing 266 n n C21 H16 LF9 sing 267 n n C22 H17 LF9 sing 268 n n C22 H18 LF9 sing 269 n n C22 H19 LF9 sing 270 n n C23 H20 LF9 sing 271 n n C23 H21 LF9 sing 272 n n C23 H22 LF9 sing 273 n n N2 H23 LF9 sing 274 n n C29 H25 LF9 sing 275 n n C30 H26 LF9 sing 276 n n C31 H27 LF9 sing 277 n n # _atom_sites.entry_id 4O5B _atom_sites.fract_transf_matrix[1][1] 0.013879 _atom_sites.fract_transf_matrix[1][2] 0.008013 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LF9 A 1 301 1 LF9 LF9 . C 3 SO4 A 1 302 3 SO4 SO4 . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LF9 . . . B 2 37.715 -32.578 -27.556 1 60.16 ? C1 LF9 301 A 1 HETATM 2 C C2 LF9 . . . B 2 36.937 -31.467 -27.884 1 50.4 ? C2 LF9 301 A 1 HETATM 3 C C3 LF9 . . . B 2 35.641 -31.656 -28.293 1 47.67 ? C3 LF9 301 A 1 HETATM 4 C C4 LF9 . . . B 2 35.144 -32.95 -28.346 1 49.29 ? C4 LF9 301 A 1 HETATM 5 C C5 LF9 . . . B 2 35.973 -34.032 -28.041 1 54.55 ? C5 LF9 301 A 1 HETATM 6 N N1 LF9 . . . B 2 37.226 -33.817 -27.649 1 58.37 ? N1 LF9 301 A 1 HETATM 7 C C7 LF9 . . . B 2 34.764 -30.499 -28.642 1 46.76 ? C7 LF9 301 A 1 HETATM 8 C C8 LF9 . . . B 2 34.184 -29.684 -27.637 1 46.7 ? C8 LF9 301 A 1 HETATM 9 C C9 LF9 . . . B 2 33.327 -28.612 -27.992 1 44.89 ? C9 LF9 301 A 1 HETATM 10 C C10 LF9 . . . B 2 33.071 -28.324 -29.337 1 41.13 ? C10 LF9 301 A 1 HETATM 11 C C11 LF9 . . . B 2 33.654 -29.166 -30.324 1 47.6 ? C11 LF9 301 A 1 HETATM 12 C C12 LF9 . . . B 2 34.486 -30.255 -29.99 1 44.01 ? C12 LF9 301 A 1 HETATM 13 C C13 LF9 . . . B 2 37.519 -30.068 -27.811 1 44.55 ? C13 LF9 301 A 1 HETATM 14 C C14 LF9 . . . B 2 35.57 -35.484 -28.075 1 51.41 ? C14 LF9 301 A 1 HETATM 15 C C15 LF9 . . . B 2 33.723 -33.154 -28.738 1 52.92 ? C15 LF9 301 A 1 HETATM 16 C C16 LF9 . . . B 2 33.54 -33.654 -30.163 1 59.17 ? C16 LF9 301 A 1 HETATM 17 O O17 LF9 . . . B 2 33.11 -34.077 -27.794 1 49.86 ? O17 LF9 301 A 1 HETATM 18 O O18 LF9 . . . B 2 34.321 -33.175 -31.038 1 62.11 ? O18 LF9 301 A 1 HETATM 19 O O19 LF9 . . . B 2 32.612 -34.5 -30.391 1 52.31 ? O19 LF9 301 A 1 HETATM 20 C C20 LF9 . . . B 2 32.489 -33.606 -26.571 1 48.48 ? C20 LF9 301 A 1 HETATM 21 C C21 LF9 . . . B 2 33.568 -33.356 -25.551 1 42.15 ? C21 LF9 301 A 1 HETATM 22 C C22 LF9 . . . B 2 31.554 -34.679 -25.995 1 40.68 ? C22 LF9 301 A 1 HETATM 23 C C23 LF9 . . . B 2 31.737 -32.303 -26.78 1 42.34 ? C23 LF9 301 A 1 HETATM 24 C C24 LF9 . . . B 2 39.129 -32.402 -27.13 1 72.58 ? C24 LF9 301 A 1 HETATM 25 N N2 LF9 . . . B 2 40.183 -32.627 -27.899 1 86.15 ? N2 LF9 301 A 1 HETATM 26 C C26 LF9 . . . B 2 41.288 -32.333 -27.192 1 101.03 ? C26 LF9 301 A 1 HETATM 27 C C27 LF9 . . . B 2 40.893 -31.91 -25.928 1 98.23 ? C27 LF9 301 A 1 HETATM 28 N N3 LF9 . . . B 2 39.548 -31.969 -25.921 1 82.06 ? N3 LF9 301 A 1 HETATM 29 C C29 LF9 . . . B 2 42.64 -32.393 -27.535 1 114.57 ? C29 LF9 301 A 1 HETATM 30 C C30 LF9 . . . B 2 41.856 -31.536 -24.978 1 107.04 ? C30 LF9 301 A 1 HETATM 31 C C31 LF9 . . . B 2 43.604 -32.025 -26.598 1 122.45 ? C31 LF9 301 A 1 HETATM 32 C C32 LF9 . . . B 2 43.215 -31.596 -25.329 1 116.24 ? C32 LF9 301 A 1 HETATM 33 CL CL LF9 . . . B 2 44.522 -31.14 -24.193 1 116.61 ? CL LF9 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #