data_4O5W # _model_server_result.job_id g5W8_p6WJmWwRyxJ9RIP_A _model_server_result.datetime_utc '2024-11-01 03:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 4O5W # _exptl.entry_id 4O5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O5W _cell.length_a 25.863 _cell.length_b 40.293 _cell.length_c 65.266 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 3 A DC 3 1_555 A P C6G 4 A C6G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? covale ? covale2 A O3' C6G 4 A C6G 4 1_555 A P DA 5 A DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? covale ? covale3 B O3' DC 3 B DC 15 1_555 B P C6G 4 B C6G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? covale ? covale4 B O3' C6G 4 B C6G 16 1_555 B P DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? metalc ? metalc1 A O4 DT 9 A DT 9 1_555 D MG MG . A MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc2 D MG MG . A MG 102 1_555 G O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc3 D MG MG . A MG 102 1_555 H O HOH . B HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 E MG MG . A MG 103 1_555 G O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 E MG MG . A MG 103 1_555 G O HOH . A HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 E MG MG . A MG 103 1_555 G O HOH . A HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc7 E MG MG . A MG 103 1_555 G O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc8 E MG MG . A MG 103 1_555 H O HOH . B HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc9 E MG MG . A MG 103 1_555 H O HOH . B HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc10 G O HOH . A HOH 207 1_555 F SR SR . B SR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc11 G O HOH . A HOH 248 1_555 F SR SR . B SR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc12 B O4 DT 9 B DT 21 1_555 F SR SR . B SR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc13 F SR SR . B SR 101 1_555 H O HOH . B HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc14 F SR SR . B SR 101 1_555 H O HOH . B HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O5W _atom_sites.fract_transf_matrix[1][1] 0.038665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HT A 1 101 59 HT HT . D 3 MG A 1 102 1 MG MG . E 3 MG A 1 103 1 MG MG . F 4 SR B 1 101 1 SR SR . G 5 HOH A 1 201 3 HOH HOH . G 5 HOH A 2 202 4 HOH HOH . G 5 HOH A 3 203 7 HOH HOH . G 5 HOH A 4 204 9 HOH HOH . G 5 HOH A 5 205 14 HOH HOH . G 5 HOH A 6 206 17 HOH HOH . G 5 HOH A 7 207 18 HOH HOH . G 5 HOH A 8 208 24 HOH HOH . G 5 HOH A 9 209 29 HOH HOH . G 5 HOH A 10 210 33 HOH HOH . G 5 HOH A 11 211 45 HOH HOH . G 5 HOH A 12 212 90 HOH HOH . G 5 HOH A 13 213 96 HOH HOH . G 5 HOH A 14 214 97 HOH HOH . G 5 HOH A 15 215 107 HOH HOH . G 5 HOH A 16 216 125 HOH HOH . G 5 HOH A 17 217 129 HOH HOH . G 5 HOH A 18 218 137 HOH HOH . G 5 HOH A 19 219 141 HOH HOH . G 5 HOH A 20 220 143 HOH HOH . G 5 HOH A 21 221 149 HOH HOH . G 5 HOH A 22 222 177 HOH HOH . G 5 HOH A 23 223 223 HOH HOH . G 5 HOH A 24 224 253 HOH HOH . G 5 HOH A 25 225 254 HOH HOH . G 5 HOH A 26 226 255 HOH HOH . G 5 HOH A 27 227 260 HOH HOH . G 5 HOH A 28 228 264 HOH HOH . G 5 HOH A 29 229 275 HOH HOH . G 5 HOH A 30 230 277 HOH HOH . G 5 HOH A 31 231 289 HOH HOH . G 5 HOH A 32 232 294 HOH HOH . G 5 HOH A 33 233 299 HOH HOH . G 5 HOH A 34 234 304 HOH HOH . G 5 HOH A 35 235 306 HOH HOH . G 5 HOH A 36 236 311 HOH HOH . G 5 HOH A 37 237 312 HOH HOH . G 5 HOH A 38 238 325 HOH HOH . G 5 HOH A 39 239 326 HOH HOH . G 5 HOH A 40 240 330 HOH HOH . G 5 HOH A 41 241 331 HOH HOH . G 5 HOH A 42 242 335 HOH HOH . G 5 HOH A 43 243 336 HOH HOH . G 5 HOH A 44 244 338 HOH HOH . G 5 HOH A 45 245 339 HOH HOH . G 5 HOH A 46 246 78 HOH HOH . G 5 HOH A 47 247 118 HOH HOH . G 5 HOH A 48 248 301 HOH HOH . H 5 HOH B 1 201 2 HOH HOH . H 5 HOH B 2 202 5 HOH HOH . H 5 HOH B 3 203 10 HOH HOH . H 5 HOH B 4 204 11 HOH HOH . H 5 HOH B 5 205 13 HOH HOH . H 5 HOH B 6 206 15 HOH HOH . H 5 HOH B 7 207 16 HOH HOH . H 5 HOH B 8 208 19 HOH HOH . H 5 HOH B 9 209 21 HOH HOH . H 5 HOH B 10 210 22 HOH HOH . H 5 HOH B 11 211 32 HOH HOH . H 5 HOH B 12 212 34 HOH HOH . H 5 HOH B 13 213 37 HOH HOH . H 5 HOH B 14 214 38 HOH HOH . H 5 HOH B 15 215 40 HOH HOH . H 5 HOH B 16 216 52 HOH HOH . H 5 HOH B 17 217 72 HOH HOH . H 5 HOH B 18 218 74 HOH HOH . H 5 HOH B 19 219 81 HOH HOH . H 5 HOH B 20 220 83 HOH HOH . H 5 HOH B 21 221 93 HOH HOH . H 5 HOH B 22 222 94 HOH HOH . H 5 HOH B 23 223 99 HOH HOH . H 5 HOH B 24 224 103 HOH HOH . H 5 HOH B 25 225 128 HOH HOH . H 5 HOH B 26 226 140 HOH HOH . H 5 HOH B 27 227 142 HOH HOH . H 5 HOH B 28 228 145 HOH HOH . H 5 HOH B 29 229 148 HOH HOH . H 5 HOH B 30 230 156 HOH HOH . H 5 HOH B 31 231 192 HOH HOH . H 5 HOH B 32 232 193 HOH HOH . H 5 HOH B 33 233 196 HOH HOH . H 5 HOH B 34 234 197 HOH HOH . H 5 HOH B 35 235 230 HOH HOH . H 5 HOH B 36 236 274 HOH HOH . H 5 HOH B 37 237 276 HOH HOH . H 5 HOH B 38 238 278 HOH HOH . H 5 HOH B 39 239 279 HOH HOH . H 5 HOH B 40 240 280 HOH HOH . H 5 HOH B 41 241 288 HOH HOH . H 5 HOH B 42 242 290 HOH HOH . H 5 HOH B 43 243 297 HOH HOH . H 5 HOH B 44 244 298 HOH HOH . H 5 HOH B 45 245 302 HOH HOH . H 5 HOH B 46 246 307 HOH HOH . H 5 HOH B 47 247 314 HOH HOH . H 5 HOH B 48 248 315 HOH HOH . H 5 HOH B 49 249 316 HOH HOH . H 5 HOH B 50 250 317 HOH HOH . H 5 HOH B 51 251 318 HOH HOH . H 5 HOH B 52 252 319 HOH HOH . H 5 HOH B 53 253 320 HOH HOH . H 5 HOH B 54 254 323 HOH HOH . H 5 HOH B 55 255 327 HOH HOH . H 5 HOH B 56 256 328 HOH HOH . H 5 HOH B 57 257 329 HOH HOH . H 5 HOH B 58 258 332 HOH HOH . H 5 HOH B 59 259 333 HOH HOH . H 5 HOH B 60 260 334 HOH HOH . H 5 HOH B 61 261 340 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.979 _atom_site.Cartn_y -4.968 _atom_site.Cartn_z 33.697 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #