data_4O5Z # _model_server_result.job_id Slv1wOBSZSktw_eGpdmeKQ _model_server_result.datetime_utc '2024-11-01 05:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4O5Z # _exptl.entry_id 4O5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O5Z _cell.length_a 25.873 _cell.length_b 41.764 _cell.length_c 64.608 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 3 A DC 3 1_555 A P C6G 4 A C6G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.569 ? covale ? covale2 A O3' C6G 4 A C6G 4 1_555 A P DA 5 A DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? covale ? covale3 B O3' DC 3 B DC 15 1_555 B P C6G 4 B C6G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? covale ? covale4 B O3' C6G 4 B C6G 16 1_555 B P DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 ? metalc ? metalc1 A O4 DT 9 A DT 9 1_555 C NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc2 C NA NA . A NA 101 1_555 E O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc3 C NA NA . A NA 101 1_555 E O HOH . A HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 C NA NA . A NA 101 1_555 F O HOH . B HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc5 E O HOH . A HOH 204 1_555 D BA BA . B BA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc6 B O4 DT 9 B DT 21 1_555 D BA BA . B BA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc7 B O6 DG 10 B DG 22 1_555 D BA BA . B BA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? metalc ? metalc8 D BA BA . B BA 101 1_555 F O HOH . B HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc9 D BA BA . B BA 101 1_555 F O HOH . B HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc10 D BA BA . B BA 101 1_555 F O HOH . B HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc11 D BA BA . B BA 101 1_555 F O HOH . B HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O5Z _atom_sites.fract_transf_matrix[1][1] 0.03865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 101 1 NA NA . D 3 BA B 1 101 1 BA BA . E 4 HOH A 1 201 14 HOH HOH . E 4 HOH A 2 202 18 HOH HOH . E 4 HOH A 3 203 21 HOH HOH . E 4 HOH A 4 204 26 HOH HOH . E 4 HOH A 5 205 30 HOH HOH . E 4 HOH A 6 206 33 HOH HOH . E 4 HOH A 7 207 35 HOH HOH . E 4 HOH A 8 208 37 HOH HOH . E 4 HOH A 9 209 61 HOH HOH . E 4 HOH A 10 210 66 HOH HOH . E 4 HOH A 11 211 70 HOH HOH . E 4 HOH A 12 212 75 HOH HOH . E 4 HOH A 13 213 76 HOH HOH . E 4 HOH A 14 214 86 HOH HOH . E 4 HOH A 15 215 91 HOH HOH . E 4 HOH A 16 216 111 HOH HOH . E 4 HOH A 17 217 114 HOH HOH . E 4 HOH A 18 218 121 HOH HOH . E 4 HOH A 19 219 143 HOH HOH . E 4 HOH A 20 220 174 HOH HOH . E 4 HOH A 21 221 175 HOH HOH . E 4 HOH A 22 222 179 HOH HOH . E 4 HOH A 23 223 193 HOH HOH . E 4 HOH A 24 224 195 HOH HOH . E 4 HOH A 25 225 203 HOH HOH . E 4 HOH A 26 226 204 HOH HOH . E 4 HOH A 27 227 225 HOH HOH . E 4 HOH A 28 228 235 HOH HOH . E 4 HOH A 29 229 239 HOH HOH . E 4 HOH A 30 230 251 HOH HOH . E 4 HOH A 31 231 5 HOH HOH . E 4 HOH A 32 232 6 HOH HOH . E 4 HOH A 33 233 13 HOH HOH . E 4 HOH A 34 234 32 HOH HOH . E 4 HOH A 35 235 34 HOH HOH . E 4 HOH A 36 236 35 HOH HOH . E 4 HOH A 37 237 38 HOH HOH . E 4 HOH A 38 238 44 HOH HOH . E 4 HOH A 39 239 45 HOH HOH . E 4 HOH A 40 240 46 HOH HOH . E 4 HOH A 41 241 47 HOH HOH . E 4 HOH A 42 242 48 HOH HOH . E 4 HOH A 43 243 49 HOH HOH . E 4 HOH A 44 244 57 HOH HOH . E 4 HOH A 45 245 59 HOH HOH . E 4 HOH A 46 246 60 HOH HOH . E 4 HOH A 47 247 61 HOH HOH . E 4 HOH A 48 248 67 HOH HOH . E 4 HOH A 49 249 71 HOH HOH . E 4 HOH A 50 250 72 HOH HOH . E 4 HOH A 51 251 73 HOH HOH . E 4 HOH A 52 252 77 HOH HOH . E 4 HOH A 53 253 82 HOH HOH . E 4 HOH A 54 254 10 HOH HOH . E 4 HOH A 55 255 11 HOH HOH . E 4 HOH A 56 256 12 HOH HOH . F 4 HOH B 1 201 24 HOH HOH . F 4 HOH B 2 202 1 HOH HOH . F 4 HOH B 3 203 4 HOH HOH . F 4 HOH B 4 204 5 HOH HOH . F 4 HOH B 5 205 7 HOH HOH . F 4 HOH B 6 206 8 HOH HOH . F 4 HOH B 7 207 9 HOH HOH . F 4 HOH B 8 208 13 HOH HOH . F 4 HOH B 9 209 15 HOH HOH . F 4 HOH B 10 210 16 HOH HOH . F 4 HOH B 11 211 17 HOH HOH . F 4 HOH B 12 212 20 HOH HOH . F 4 HOH B 13 213 25 HOH HOH . F 4 HOH B 14 214 36 HOH HOH . F 4 HOH B 15 215 40 HOH HOH . F 4 HOH B 16 216 44 HOH HOH . F 4 HOH B 17 217 45 HOH HOH . F 4 HOH B 18 218 46 HOH HOH . F 4 HOH B 19 219 52 HOH HOH . F 4 HOH B 20 220 54 HOH HOH . F 4 HOH B 21 221 64 HOH HOH . F 4 HOH B 22 222 74 HOH HOH . F 4 HOH B 23 223 82 HOH HOH . F 4 HOH B 24 224 87 HOH HOH . F 4 HOH B 25 225 89 HOH HOH . F 4 HOH B 26 226 90 HOH HOH . F 4 HOH B 27 227 97 HOH HOH . F 4 HOH B 28 228 98 HOH HOH . F 4 HOH B 29 229 117 HOH HOH . F 4 HOH B 30 230 122 HOH HOH . F 4 HOH B 31 231 129 HOH HOH . F 4 HOH B 32 232 134 HOH HOH . F 4 HOH B 33 233 135 HOH HOH . F 4 HOH B 34 234 136 HOH HOH . F 4 HOH B 35 235 155 HOH HOH . F 4 HOH B 36 236 183 HOH HOH . F 4 HOH B 37 237 186 HOH HOH . F 4 HOH B 38 238 196 HOH HOH . F 4 HOH B 39 239 224 HOH HOH . F 4 HOH B 40 240 229 HOH HOH . F 4 HOH B 41 241 232 HOH HOH . F 4 HOH B 42 242 234 HOH HOH . F 4 HOH B 43 243 247 HOH HOH . F 4 HOH B 44 244 248 HOH HOH . F 4 HOH B 45 245 249 HOH HOH . F 4 HOH B 46 246 14 HOH HOH . F 4 HOH B 47 247 15 HOH HOH . F 4 HOH B 48 248 17 HOH HOH . F 4 HOH B 49 249 20 HOH HOH . F 4 HOH B 50 250 21 HOH HOH . F 4 HOH B 51 251 37 HOH HOH . F 4 HOH B 52 252 39 HOH HOH . F 4 HOH B 53 253 43 HOH HOH . F 4 HOH B 54 254 50 HOH HOH . F 4 HOH B 55 255 51 HOH HOH . F 4 HOH B 56 256 53 HOH HOH . F 4 HOH B 57 257 54 HOH HOH . F 4 HOH B 58 258 55 HOH HOH . F 4 HOH B 59 259 56 HOH HOH . F 4 HOH B 60 260 62 HOH HOH . F 4 HOH B 61 261 63 HOH HOH . F 4 HOH B 62 262 65 HOH HOH . F 4 HOH B 63 263 66 HOH HOH . F 4 HOH B 64 264 68 HOH HOH . F 4 HOH B 65 265 69 HOH HOH . F 4 HOH B 66 266 76 HOH HOH . F 4 HOH B 67 267 80 HOH HOH . F 4 HOH B 68 268 81 HOH HOH . F 4 HOH B 69 269 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.228 _atom_site.Cartn_y 5.058 _atom_site.Cartn_z -1.468 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #