data_4O6C
#
_model_server_result.job_id            q9TVXOrJ2rmA3mLc-bnP2A 
_model_server_result.datetime_utc      '2024-11-20 11:47:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":402}' 
#
_entry.id    4O6C 
#
_exptl.entry_id    4O6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4O6C 
_cell.length_a            186.885 
_cell.length_b            186.885 
_cell.length_c            81.765 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I 1 1 
C,D,J,K,L 2 1 
E,F,M,N,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 4 1_555 A SG CYS 40 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 80 A CYS 55 1_555 A SG CYS 168 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 204 A CYS 179 1_555 A SG CYS 248 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 305 A CYS 280 1_555 A SG CYS 354 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 A SG CYS 316 A CYS 291 1_555 A SG CYS 337 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 A SG CYS 338 A CYS 313 1_555 A SG CYS 341 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 29 B CYS 4 1_555 B SG CYS 40 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 B SG CYS 80 B CYS 55 1_555 B SG CYS 168 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 B SG CYS 204 B CYS 179 1_555 B SG CYS 248 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf10 B SG CYS 305 B CYS 280 1_555 B SG CYS 354 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 B SG CYS 316 B CYS 291 1_555 B SG CYS 337 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 B SG CYS 338 B CYS 313 1_555 B SG CYS 341 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 C SG CYS 29 C CYS 4 1_555 C SG CYS 40 C CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 C SG CYS 80 C CYS 55 1_555 C SG CYS 168 C CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf15 C SG CYS 204 C CYS 179 1_555 C SG CYS 248 C CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 C SG CYS 305 C CYS 280 1_555 C SG CYS 354 C CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 C SG CYS 316 C CYS 291 1_555 C SG CYS 337 C CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 C SG CYS 338 C CYS 313 1_555 C SG CYS 341 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf19 D SG CYS 29 D CYS 4 1_555 D SG CYS 40 D CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 D SG CYS 80 D CYS 55 1_555 D SG CYS 168 D CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf21 D SG CYS 204 D CYS 179 1_555 D SG CYS 248 D CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf22 D SG CYS 305 D CYS 280 1_555 D SG CYS 354 D CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf23 D SG CYS 316 D CYS 291 1_555 D SG CYS 337 D CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf24 D SG CYS 338 D CYS 313 1_555 D SG CYS 341 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf25 E SG CYS 29 E CYS 4 1_555 E SG CYS 40 E CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf26 E SG CYS 80 E CYS 55 1_555 E SG CYS 168 E CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf27 E SG CYS 204 E CYS 179 1_555 E SG CYS 248 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf28 E SG CYS 305 E CYS 280 1_555 E SG CYS 354 E CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf29 E SG CYS 316 E CYS 291 1_555 E SG CYS 337 E CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf30 E SG CYS 338 E CYS 313 1_555 E SG CYS 341 E CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf31 F SG CYS 29 F CYS 4 1_555 F SG CYS 40 F CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf32 F SG CYS 80 F CYS 55 1_555 F SG CYS 168 F CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf33 F SG CYS 204 F CYS 179 1_555 F SG CYS 248 F CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf34 F SG CYS 305 F CYS 280 1_555 F SG CYS 354 F CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf35 F SG CYS 316 F CYS 291 1_555 F SG CYS 337 F CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf36 F SG CYS 338 F CYS 313 1_555 F SG CYS 341 F CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 155 A ASN 130 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 B ND2 ASN 155 B ASN 130 1_555 I C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 C ND2 ASN 155 C ASN 130 1_555 J C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 D ND2 ASN 155 D ASN 130 1_555 L C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 E ND2 ASN 155 E ASN 130 1_555 M C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale6 F ND2 ASN 155 F ASN 130 1_555 N C1 NAG . F NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 318 n n 
S O2 SO4 doub 319 n n 
S O3 SO4 sing 320 n n 
S O4 SO4 sing 321 n n 
#
_atom_sites.entry_id                     4O6C 
_atom_sites.fract_transf_matrix[1][1]    0.005351 
_atom_sites.fract_transf_matrix[1][2]    0.003089 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01223 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAG A 1 401 401 NAG NAG . 
H 3 SO4 A 1 402 1 SO4 SO4 . 
I 2 NAG B 1 401 401 NAG NAG . 
J 2 NAG C 1 401 401 NAG NAG . 
K 3 SO4 C 1 402 2 SO4 SO4 . 
L 2 NAG D 1 401 401 NAG NAG . 
M 2 NAG E 1 401 401 NAG NAG . 
N 2 NAG F 1 401 401 NAG NAG . 
O 3 SO4 F 1 402 3 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . O 3 -58.555 -89.605 25.084 1 93.42 ? S SO4 402 F 1 
HETATM 2 O O1 SO4 . . . O 3 -57.176 -89.608 24.615 1 92.81 ? O1 SO4 402 F 1 
HETATM 3 O O2 SO4 . . . O 3 -59.453 -89.227 24 1 93.47 ? O2 SO4 402 F 1 
HETATM 4 O O3 SO4 . . . O 3 -58.905 -90.938 25.554 1 93.35 ? O3 SO4 402 F 1 
HETATM 5 O O4 SO4 . . . O 3 -58.69 -88.643 26.17 1 93.72 ? O4 SO4 402 F 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#