data_4O6L # _model_server_result.job_id FBix7Z8QcTFcBFR1qKTM2A _model_server_result.datetime_utc '2025-01-25 07:51:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 4O6L # _exptl.entry_id 4O6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 133.14 _cell.angle_gamma 90 _cell.entry_id 4O6L _cell.length_a 153.232 _cell.length_b 70.26 _cell.length_c 106.889 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 160 A ASP 674 1_555 A N TPO 161 A TPO 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TPO 161 A TPO 675 1_555 A N TPO 162 A TPO 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C TPO 162 A TPO 676 1_555 A N SEP 163 A SEP 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 200 n n C1 C2 GOL sing 201 n n C1 H11 GOL sing 202 n n C1 H12 GOL sing 203 n n O1 HO1 GOL sing 204 n n C2 O2 GOL sing 205 n n C2 C3 GOL sing 206 n n C2 H2 GOL sing 207 n n O2 HO2 GOL sing 208 n n C3 O3 GOL sing 209 n n C3 H31 GOL sing 210 n n C3 H32 GOL sing 211 n n O3 HO3 GOL sing 212 n n # _atom_sites.entry_id 4O6L _atom_sites.fract_transf_matrix[1][1] 0.006526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2QK A 1 1001 1001 2QK 498 . D 3 GOL A 1 1002 2 GOL GOL . E 2 2QK B 1 1001 1001 2QK 498 . F 3 GOL B 1 1002 1 GOL GOL . G 4 HOH A 1 1101 4 HOH HOH . G 4 HOH A 2 1102 6 HOH HOH . G 4 HOH A 3 1103 7 HOH HOH . G 4 HOH A 4 1104 9 HOH HOH . G 4 HOH A 5 1105 10 HOH HOH . G 4 HOH A 6 1106 11 HOH HOH . G 4 HOH A 7 1107 12 HOH HOH . G 4 HOH A 8 1108 13 HOH HOH . G 4 HOH A 9 1109 14 HOH HOH . G 4 HOH A 10 1110 15 HOH HOH . G 4 HOH A 11 1111 18 HOH HOH . G 4 HOH A 12 1112 20 HOH HOH . G 4 HOH A 13 1113 23 HOH HOH . G 4 HOH A 14 1114 24 HOH HOH . G 4 HOH A 15 1115 25 HOH HOH . G 4 HOH A 16 1116 26 HOH HOH . G 4 HOH A 17 1117 36 HOH HOH . G 4 HOH A 18 1118 38 HOH HOH . G 4 HOH A 19 1119 39 HOH HOH . G 4 HOH A 20 1120 61 HOH HOH . G 4 HOH A 21 1121 64 HOH HOH . G 4 HOH A 22 1122 69 HOH HOH . G 4 HOH A 23 1123 73 HOH HOH . G 4 HOH A 24 1124 82 HOH HOH . G 4 HOH A 25 1125 86 HOH HOH . G 4 HOH A 26 1126 93 HOH HOH . G 4 HOH A 27 1127 95 HOH HOH . G 4 HOH A 28 1128 101 HOH HOH . G 4 HOH A 29 1129 106 HOH HOH . G 4 HOH A 30 1130 107 HOH HOH . G 4 HOH A 31 1131 110 HOH HOH . G 4 HOH A 32 1132 114 HOH HOH . H 4 HOH B 1 1101 1 HOH HOH . H 4 HOH B 2 1102 2 HOH HOH . H 4 HOH B 3 1103 3 HOH HOH . H 4 HOH B 4 1104 5 HOH HOH . H 4 HOH B 5 1105 8 HOH HOH . H 4 HOH B 6 1106 27 HOH HOH . H 4 HOH B 7 1107 28 HOH HOH . H 4 HOH B 8 1108 29 HOH HOH . H 4 HOH B 9 1109 30 HOH HOH . H 4 HOH B 10 1110 31 HOH HOH . H 4 HOH B 11 1111 32 HOH HOH . H 4 HOH B 12 1112 37 HOH HOH . H 4 HOH B 13 1113 40 HOH HOH . H 4 HOH B 14 1114 41 HOH HOH . H 4 HOH B 15 1115 47 HOH HOH . H 4 HOH B 16 1116 53 HOH HOH . H 4 HOH B 17 1117 56 HOH HOH . H 4 HOH B 18 1118 58 HOH HOH . H 4 HOH B 19 1119 59 HOH HOH . H 4 HOH B 20 1120 63 HOH HOH . H 4 HOH B 21 1121 75 HOH HOH . H 4 HOH B 22 1122 77 HOH HOH . H 4 HOH B 23 1123 79 HOH HOH . H 4 HOH B 24 1124 80 HOH HOH . H 4 HOH B 25 1125 83 HOH HOH . H 4 HOH B 26 1126 88 HOH HOH . H 4 HOH B 27 1127 91 HOH HOH . H 4 HOH B 28 1128 92 HOH HOH . H 4 HOH B 29 1129 94 HOH HOH . H 4 HOH B 30 1130 97 HOH HOH . H 4 HOH B 31 1131 103 HOH HOH . H 4 HOH B 32 1132 104 HOH HOH . H 4 HOH B 33 1133 105 HOH HOH . H 4 HOH B 34 1134 108 HOH HOH . H 4 HOH B 35 1135 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 37.466 -11.676 -8.233 1 47.32 ? C1 GOL 1002 B 1 HETATM 2 O O1 GOL . . . F 3 36.925 -10.617 -7.468 1 43.35 ? O1 GOL 1002 B 1 HETATM 3 C C2 GOL . . . F 3 37.86 -11.333 -9.664 1 45.28 ? C2 GOL 1002 B 1 HETATM 4 O O2 GOL . . . F 3 39.183 -11.761 -9.897 1 39.71 ? O2 GOL 1002 B 1 HETATM 5 C C3 GOL . . . F 3 36.91 -11.901 -10.726 1 50.9 ? C3 GOL 1002 B 1 HETATM 6 O O3 GOL . . . F 3 35.715 -11.153 -10.795 1 54.23 ? O3 GOL 1002 B 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #