data_4O6N # _model_server_result.job_id gH9iMSVRfMupPdI7TyE_aA _model_server_result.datetime_utc '2024-11-13 05:50:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 4O6N # _exptl.entry_id 4O6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.07 _cell.angle_gamma 90 _cell.entry_id 4O6N _cell.length_a 46.329 _cell.length_b 90.67 _cell.length_c 106.444 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 242 A ASP 214 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 A OD1 ASP 242 A ASP 214 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 A OD1 ASP 245 A ASP 217 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc4 A OD2 ASP 245 A ASP 217 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 A OD2 ASP 263 A ASP 235 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc6 A OD1 ASP 263 A ASP 235 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc7 A OD1 ASP 263 A ASP 235 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 A O ASP 263 A ASP 235 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc9 A OD1 ASP 267 A ASP 239 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc10 A OD2 ASP 267 A ASP 239 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc11 C CA CA . A CA 401 1_555 E O2A CDP . A CDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 C CA CA . A CA 401 1_555 E O3B CDP . A CDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc13 D CA CA . A CA 402 1_555 T O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc14 B O ASP 242 B ASP 214 1_555 L CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc15 B OD1 ASP 242 B ASP 214 1_555 L CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc16 B OD1 ASP 242 B ASP 214 1_555 M CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc17 B OD2 ASP 245 B ASP 217 1_555 L CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc18 B OD1 ASP 245 B ASP 217 1_555 L CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc19 B OD2 ASP 263 B ASP 235 1_555 L CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc20 B OD1 ASP 263 B ASP 235 1_555 L CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc21 B OD1 ASP 263 B ASP 235 1_555 M CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc22 B O ASP 263 B ASP 235 1_555 M CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc23 B OD1 ASP 267 B ASP 239 1_555 M CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc24 B OD2 ASP 267 B ASP 239 1_555 M CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc25 L CA CA . B CA 401 1_555 N O2A CDP . B CDP 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.45 ? metalc ? metalc26 L CA CA . B CA 401 1_555 N O2A CDP . B CDP 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.471 ? metalc ? metalc27 L CA CA . B CA 401 1_555 N O3B CDP . B CDP 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.904 ? metalc ? metalc28 M CA CA . B CA 402 1_555 U O HOH . B HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O6N _atom_sites.fract_transf_matrix[1][1] 0.021585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00078 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 2 CA CA . D 2 CA A 1 402 3 CA CA . E 3 CDP A 1 403 1 CDP CDP . F 4 MPG A 1 404 5 MPG MPG . G 4 MPG A 1 405 6 MPG MPG . H 4 MPG A 1 406 7 MPG MPG . I 4 MPG A 1 407 8 MPG MPG . J 4 MPG A 1 408 9 MPG MPG . K 5 TLA A 1 409 1 TLA TLA . L 2 CA B 1 401 1 CA CA . M 2 CA B 1 402 4 CA CA . N 3 CDP B 1 403 2 CDP CDP . O 4 MPG B 1 404 1 MPG MPG . P 4 MPG B 1 405 2 MPG MPG . Q 4 MPG B 1 406 3 MPG MPG . R 4 MPG B 1 407 4 MPG MPG . S 5 TLA B 1 408 2 TLA TLA . T 6 HOH A 1 501 3 HOH HOH . T 6 HOH A 2 502 4 HOH HOH . T 6 HOH A 3 503 6 HOH HOH . T 6 HOH A 4 504 7 HOH HOH . T 6 HOH A 5 505 8 HOH HOH . T 6 HOH A 6 506 13 HOH HOH . T 6 HOH A 7 507 14 HOH HOH . T 6 HOH A 8 508 16 HOH HOH . T 6 HOH A 9 509 19 HOH HOH . T 6 HOH A 10 510 23 HOH HOH . T 6 HOH A 11 511 24 HOH HOH . T 6 HOH A 12 512 25 HOH HOH . T 6 HOH A 13 513 26 HOH HOH . T 6 HOH A 14 514 27 HOH HOH . T 6 HOH A 15 515 30 HOH HOH . T 6 HOH A 16 516 31 HOH HOH . T 6 HOH A 17 517 34 HOH HOH . T 6 HOH A 18 518 38 HOH HOH . T 6 HOH A 19 519 39 HOH HOH . T 6 HOH A 20 520 45 HOH HOH . T 6 HOH A 21 521 47 HOH HOH . T 6 HOH A 22 522 48 HOH HOH . T 6 HOH A 23 523 52 HOH HOH . T 6 HOH A 24 524 54 HOH HOH . T 6 HOH A 25 525 55 HOH HOH . T 6 HOH A 26 526 57 HOH HOH . T 6 HOH A 27 527 62 HOH HOH . T 6 HOH A 28 528 63 HOH HOH . T 6 HOH A 29 529 69 HOH HOH . T 6 HOH A 30 530 72 HOH HOH . T 6 HOH A 31 531 74 HOH HOH . T 6 HOH A 32 532 86 HOH HOH . T 6 HOH A 33 533 89 HOH HOH . T 6 HOH A 34 534 92 HOH HOH . T 6 HOH A 35 535 93 HOH HOH . T 6 HOH A 36 536 94 HOH HOH . T 6 HOH A 37 537 96 HOH HOH . T 6 HOH A 38 538 101 HOH HOH . T 6 HOH A 39 539 104 HOH HOH . T 6 HOH A 40 540 109 HOH HOH . T 6 HOH A 41 541 110 HOH HOH . T 6 HOH A 42 542 111 HOH HOH . T 6 HOH A 43 543 113 HOH HOH . T 6 HOH A 44 544 116 HOH HOH . T 6 HOH A 45 545 117 HOH HOH . T 6 HOH A 46 546 120 HOH HOH . T 6 HOH A 47 547 121 HOH HOH . T 6 HOH A 48 548 122 HOH HOH . T 6 HOH A 49 549 123 HOH HOH . T 6 HOH A 50 550 124 HOH HOH . T 6 HOH A 51 551 125 HOH HOH . T 6 HOH A 52 552 128 HOH HOH . T 6 HOH A 53 553 129 HOH HOH . T 6 HOH A 54 554 130 HOH HOH . T 6 HOH A 55 555 131 HOH HOH . T 6 HOH A 56 556 132 HOH HOH . T 6 HOH A 57 557 133 HOH HOH . T 6 HOH A 58 558 134 HOH HOH . T 6 HOH A 59 559 135 HOH HOH . T 6 HOH A 60 560 136 HOH HOH . T 6 HOH A 61 561 140 HOH HOH . T 6 HOH A 62 562 144 HOH HOH . U 6 HOH B 1 501 2 HOH HOH . U 6 HOH B 2 502 5 HOH HOH . U 6 HOH B 3 503 9 HOH HOH . U 6 HOH B 4 504 10 HOH HOH . U 6 HOH B 5 505 11 HOH HOH . U 6 HOH B 6 506 12 HOH HOH . U 6 HOH B 7 507 15 HOH HOH . U 6 HOH B 8 508 17 HOH HOH . U 6 HOH B 9 509 18 HOH HOH . U 6 HOH B 10 510 20 HOH HOH . U 6 HOH B 11 511 21 HOH HOH . U 6 HOH B 12 512 22 HOH HOH . U 6 HOH B 13 513 28 HOH HOH . U 6 HOH B 14 514 29 HOH HOH . U 6 HOH B 15 515 32 HOH HOH . U 6 HOH B 16 516 33 HOH HOH . U 6 HOH B 17 517 35 HOH HOH . U 6 HOH B 18 518 36 HOH HOH . U 6 HOH B 19 519 37 HOH HOH . U 6 HOH B 20 520 40 HOH HOH . U 6 HOH B 21 521 41 HOH HOH . U 6 HOH B 22 522 42 HOH HOH . U 6 HOH B 23 523 43 HOH HOH . U 6 HOH B 24 524 44 HOH HOH . U 6 HOH B 25 525 46 HOH HOH . U 6 HOH B 26 526 49 HOH HOH . U 6 HOH B 27 527 50 HOH HOH . U 6 HOH B 28 528 51 HOH HOH . U 6 HOH B 29 529 53 HOH HOH . U 6 HOH B 30 530 56 HOH HOH . U 6 HOH B 31 531 58 HOH HOH . U 6 HOH B 32 532 59 HOH HOH . U 6 HOH B 33 533 61 HOH HOH . U 6 HOH B 34 534 64 HOH HOH . U 6 HOH B 35 535 65 HOH HOH . U 6 HOH B 36 536 66 HOH HOH . U 6 HOH B 37 537 67 HOH HOH . U 6 HOH B 38 538 68 HOH HOH . U 6 HOH B 39 539 70 HOH HOH . U 6 HOH B 40 540 71 HOH HOH . U 6 HOH B 41 541 73 HOH HOH . U 6 HOH B 42 542 75 HOH HOH . U 6 HOH B 43 543 76 HOH HOH . U 6 HOH B 44 544 77 HOH HOH . U 6 HOH B 45 545 78 HOH HOH . U 6 HOH B 46 546 79 HOH HOH . U 6 HOH B 47 547 80 HOH HOH . U 6 HOH B 48 548 81 HOH HOH . U 6 HOH B 49 549 82 HOH HOH . U 6 HOH B 50 550 83 HOH HOH . U 6 HOH B 51 551 84 HOH HOH . U 6 HOH B 52 552 85 HOH HOH . U 6 HOH B 53 553 87 HOH HOH . U 6 HOH B 54 554 88 HOH HOH . U 6 HOH B 55 555 90 HOH HOH . U 6 HOH B 56 556 91 HOH HOH . U 6 HOH B 57 557 97 HOH HOH . U 6 HOH B 58 558 98 HOH HOH . U 6 HOH B 59 559 99 HOH HOH . U 6 HOH B 60 560 100 HOH HOH . U 6 HOH B 61 561 102 HOH HOH . U 6 HOH B 62 562 103 HOH HOH . U 6 HOH B 63 563 105 HOH HOH . U 6 HOH B 64 564 107 HOH HOH . U 6 HOH B 65 565 108 HOH HOH . U 6 HOH B 66 566 112 HOH HOH . U 6 HOH B 67 567 114 HOH HOH . U 6 HOH B 68 568 115 HOH HOH . U 6 HOH B 69 569 118 HOH HOH . U 6 HOH B 70 570 119 HOH HOH . U 6 HOH B 71 571 126 HOH HOH . U 6 HOH B 72 572 127 HOH HOH . U 6 HOH B 73 573 137 HOH HOH . U 6 HOH B 74 574 138 HOH HOH . U 6 HOH B 75 575 139 HOH HOH . U 6 HOH B 76 576 141 HOH HOH . U 6 HOH B 77 577 142 HOH HOH . U 6 HOH B 78 578 143 HOH HOH . U 6 HOH B 79 579 145 HOH HOH . U 6 HOH B 80 580 146 HOH HOH . U 6 HOH B 81 581 147 HOH HOH . U 6 HOH B 82 582 148 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.102 _atom_site.Cartn_y 38.572 _atom_site.Cartn_z 38.155 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #