data_4O6Y # _model_server_result.job_id evhnCDCm19m0SkzyhAcIug _model_server_result.datetime_utc '2025-02-26 21:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4O6Y # _exptl.entry_id 4O6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O6Y _cell.length_a 73.275 _cell.length_b 108.514 _cell.length_c 110.785 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 A NE2 HIS 84 A HIS 84 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 A NE2 HIS 118 A HIS 118 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 A NE2 HIS 157 A HIS 157 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 B NE2 HIS 51 B HIS 51 1_555 F FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 B NE2 HIS 84 B HIS 84 1_555 G FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 B NE2 HIS 118 B HIS 118 1_555 F FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc8 B NE2 HIS 157 B HIS 157 1_555 G FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4O6Y _atom_sites.fract_transf_matrix[1][1] 0.013647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 301 1 HEM HEM . D 2 HEM A 1 302 2 HEM HEM . E 3 SO4 A 1 303 1 SO4 SO4 . F 2 HEM B 1 301 3 HEM HEM . G 2 HEM B 1 302 4 HEM HEM . H 4 HOH A 1 401 1 HOH HOH . H 4 HOH A 2 402 3 HOH HOH . H 4 HOH A 3 403 5 HOH HOH . H 4 HOH A 4 404 8 HOH HOH . H 4 HOH A 5 405 9 HOH HOH . H 4 HOH A 6 406 10 HOH HOH . H 4 HOH A 7 407 11 HOH HOH . H 4 HOH A 8 408 13 HOH HOH . H 4 HOH A 9 409 14 HOH HOH . H 4 HOH A 10 410 17 HOH HOH . H 4 HOH A 11 411 18 HOH HOH . H 4 HOH A 12 412 20 HOH HOH . H 4 HOH A 13 413 23 HOH HOH . H 4 HOH A 14 414 25 HOH HOH . H 4 HOH A 15 415 26 HOH HOH . H 4 HOH A 16 416 28 HOH HOH . H 4 HOH A 17 417 30 HOH HOH . H 4 HOH A 18 418 33 HOH HOH . H 4 HOH A 19 419 37 HOH HOH . H 4 HOH A 20 420 38 HOH HOH . H 4 HOH A 21 421 39 HOH HOH . H 4 HOH A 22 422 42 HOH HOH . H 4 HOH A 23 423 43 HOH HOH . H 4 HOH A 24 424 44 HOH HOH . H 4 HOH A 25 425 46 HOH HOH . H 4 HOH A 26 426 47 HOH HOH . H 4 HOH A 27 427 48 HOH HOH . H 4 HOH A 28 428 49 HOH HOH . H 4 HOH A 29 429 50 HOH HOH . H 4 HOH A 30 430 52 HOH HOH . H 4 HOH A 31 431 55 HOH HOH . H 4 HOH A 32 432 56 HOH HOH . H 4 HOH A 33 433 58 HOH HOH . H 4 HOH A 34 434 61 HOH HOH . H 4 HOH A 35 435 62 HOH HOH . H 4 HOH A 36 436 64 HOH HOH . H 4 HOH A 37 437 68 HOH HOH . H 4 HOH A 38 438 69 HOH HOH . H 4 HOH A 39 439 71 HOH HOH . H 4 HOH A 40 440 72 HOH HOH . H 4 HOH A 41 441 74 HOH HOH . I 4 HOH B 1 401 2 HOH HOH . I 4 HOH B 2 402 4 HOH HOH . I 4 HOH B 3 403 6 HOH HOH . I 4 HOH B 4 404 7 HOH HOH . I 4 HOH B 5 405 12 HOH HOH . I 4 HOH B 6 406 15 HOH HOH . I 4 HOH B 7 407 16 HOH HOH . I 4 HOH B 8 408 19 HOH HOH . I 4 HOH B 9 409 22 HOH HOH . I 4 HOH B 10 410 24 HOH HOH . I 4 HOH B 11 411 27 HOH HOH . I 4 HOH B 12 412 29 HOH HOH . I 4 HOH B 13 413 31 HOH HOH . I 4 HOH B 14 414 32 HOH HOH . I 4 HOH B 15 415 34 HOH HOH . I 4 HOH B 16 416 35 HOH HOH . I 4 HOH B 17 417 36 HOH HOH . I 4 HOH B 18 418 40 HOH HOH . I 4 HOH B 19 419 41 HOH HOH . I 4 HOH B 20 420 45 HOH HOH . I 4 HOH B 21 421 51 HOH HOH . I 4 HOH B 22 422 53 HOH HOH . I 4 HOH B 23 423 54 HOH HOH . I 4 HOH B 24 424 57 HOH HOH . I 4 HOH B 25 425 59 HOH HOH . I 4 HOH B 26 426 60 HOH HOH . I 4 HOH B 27 427 63 HOH HOH . I 4 HOH B 28 428 65 HOH HOH . I 4 HOH B 29 429 66 HOH HOH . I 4 HOH B 30 430 67 HOH HOH . I 4 HOH B 31 431 70 HOH HOH . I 4 HOH B 32 432 73 HOH HOH . I 4 HOH B 33 433 75 HOH HOH . I 4 HOH B 34 434 77 HOH HOH . I 4 HOH B 35 435 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 2 -7.725 -43.08 21.368 1 30.75 ? CHA HEM 302 A 1 HETATM 2 C CHB HEM . . . D 2 -7.184 -38.242 21.699 1 24.12 ? CHB HEM 302 A 1 HETATM 3 C CHC HEM . . . D 2 -3.724 -38.359 18.218 1 25.46 ? CHC HEM 302 A 1 HETATM 4 C CHD HEM . . . D 2 -4.257 -43.189 17.906 1 27.43 ? CHD HEM 302 A 1 HETATM 5 C C1A HEM . . . D 2 -7.932 -41.688 21.739 1 27.84 ? C1A HEM 302 A 1 HETATM 6 C C2A HEM . . . D 2 -8.941 -41.318 22.757 1 27.73 ? C2A HEM 302 A 1 HETATM 7 C C3A HEM . . . D 2 -8.767 -39.876 22.854 1 26.89 ? C3A HEM 302 A 1 HETATM 8 C C4A HEM . . . D 2 -7.681 -39.599 21.899 1 26 ? C4A HEM 302 A 1 HETATM 9 C CMA HEM . . . D 2 -9.497 -38.899 23.721 1 29.88 ? CMA HEM 302 A 1 HETATM 10 C CAA HEM . . . D 2 -9.922 -42.191 23.475 1 29.18 ? CAA HEM 302 A 1 HETATM 11 C CBA HEM . . . D 2 -11.031 -42.421 22.439 1 31.75 ? CBA HEM 302 A 1 HETATM 12 C CGA HEM . . . D 2 -11.954 -43.575 22.784 1 43.06 ? CGA HEM 302 A 1 HETATM 13 O O1A HEM . . . D 2 -11.928 -44.085 23.928 1 44.65 ? O1A HEM 302 A 1 HETATM 14 O O2A HEM . . . D 2 -12.731 -43.98 21.889 1 49.19 ? O2A HEM 302 A 1 HETATM 15 C C1B HEM . . . D 2 -6.146 -37.831 20.762 1 23.45 ? C1B HEM 302 A 1 HETATM 16 C C2B HEM . . . D 2 -5.753 -36.428 20.637 1 25.76 ? C2B HEM 302 A 1 HETATM 17 C C3B HEM . . . D 2 -4.731 -36.518 19.603 1 24.62 ? C3B HEM 302 A 1 HETATM 18 C C4B HEM . . . D 2 -4.643 -37.92 19.251 1 26.81 ? C4B HEM 302 A 1 HETATM 19 C CMB HEM . . . D 2 -6.302 -35.268 21.413 1 23.16 ? CMB HEM 302 A 1 HETATM 20 C CAB HEM . . . D 2 -3.891 -35.497 18.955 1 29.23 ? CAB HEM 302 A 1 HETATM 21 C CBB HEM . . . D 2 -3.952 -34.059 19.34 1 31 ? CBB HEM 302 A 1 HETATM 22 C C1C HEM . . . D 2 -3.586 -39.73 17.757 1 26.56 ? C1C HEM 302 A 1 HETATM 23 C C2C HEM . . . D 2 -2.645 -40.052 16.67 1 28.2 ? C2C HEM 302 A 1 HETATM 24 C C3C HEM . . . D 2 -2.811 -41.484 16.568 1 27.8 ? C3C HEM 302 A 1 HETATM 25 C C4C HEM . . . D 2 -3.818 -41.829 17.605 1 25.88 ? C4C HEM 302 A 1 HETATM 26 C CMC HEM . . . D 2 -1.759 -39.144 15.866 1 29.51 ? CMC HEM 302 A 1 HETATM 27 C CAC HEM . . . D 2 -2.065 -42.315 15.589 1 30.91 ? CAC HEM 302 A 1 HETATM 28 C CBC HEM . . . D 2 -2.206 -43.783 15.392 1 44.11 ? CBC HEM 302 A 1 HETATM 29 C C1D HEM . . . D 2 -5.237 -43.6 18.905 1 28.26 ? C1D HEM 302 A 1 HETATM 30 C C2D HEM . . . D 2 -5.616 -45.008 19.069 1 27.94 ? C2D HEM 302 A 1 HETATM 31 C C3D HEM . . . D 2 -6.652 -44.965 20.101 1 30.34 ? C3D HEM 302 A 1 HETATM 32 C C4D HEM . . . D 2 -6.748 -43.547 20.395 1 30.15 ? C4D HEM 302 A 1 HETATM 33 C CMD HEM . . . D 2 -5.068 -46.21 18.367 1 27.15 ? CMD HEM 302 A 1 HETATM 34 C CAD HEM . . . D 2 -7.436 -46.088 20.726 1 28.76 ? CAD HEM 302 A 1 HETATM 35 C CBD HEM . . . D 2 -8.699 -46.349 19.926 1 35.58 ? CBD HEM 302 A 1 HETATM 36 C CGD HEM . . . D 2 -9.263 -47.657 20.436 1 43.72 ? CGD HEM 302 A 1 HETATM 37 O O1D HEM . . . D 2 -8.579 -48.691 20.306 1 43.14 ? O1D HEM 302 A 1 HETATM 38 O O2D HEM . . . D 2 -10.383 -47.659 20.989 1 52.54 ? O2D HEM 302 A 1 HETATM 39 N NA HEM . . . D 2 -7.193 -40.67 21.254 1 26.34 ? NA HEM 302 A 1 HETATM 40 N NB HEM . . . D 2 -5.488 -38.692 19.942 1 24.2 ? NB HEM 302 A 1 HETATM 41 N NC HEM . . . D 2 -4.255 -40.768 18.306 1 23.36 ? NC HEM 302 A 1 HETATM 42 N ND HEM . . . D 2 -5.924 -42.756 19.684 1 24.05 ? ND HEM 302 A 1 HETATM 43 FE FE HEM . . . D 2 -5.698 -40.728 19.806 1 26.58 ? FE HEM 302 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #