data_4O74 # _model_server_result.job_id MMSoJeetcmwRgqDq9US5YQ _model_server_result.datetime_utc '2024-11-23 15:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4O74 # _exptl.entry_id 4O74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O74 _cell.length_a 42.407 _cell.length_b 59.543 _cell.length_c 114.141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4O74 _atom_sites.fract_transf_matrix[1][1] 0.023581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R78 A 1 201 1 R78 R78 . D 3 EDO A 1 202 1 EDO EDO . E 3 EDO A 1 203 3 EDO EDO . F 2 R78 B 1 201 2 R78 R78 . G 3 EDO B 1 202 2 EDO EDO . H 4 PEG B 1 203 1 PEG PEG . I 5 HOH A 1 301 2 HOH HOH . I 5 HOH A 2 302 3 HOH HOH . I 5 HOH A 3 303 6 HOH HOH . I 5 HOH A 4 304 7 HOH HOH . I 5 HOH A 5 305 8 HOH HOH . I 5 HOH A 6 306 10 HOH HOH . I 5 HOH A 7 307 14 HOH HOH . I 5 HOH A 8 308 17 HOH HOH . I 5 HOH A 9 309 18 HOH HOH . I 5 HOH A 10 310 19 HOH HOH . I 5 HOH A 11 311 22 HOH HOH . I 5 HOH A 12 312 23 HOH HOH . I 5 HOH A 13 313 24 HOH HOH . I 5 HOH A 14 314 26 HOH HOH . I 5 HOH A 15 315 28 HOH HOH . I 5 HOH A 16 316 29 HOH HOH . I 5 HOH A 17 317 30 HOH HOH . I 5 HOH A 18 318 31 HOH HOH . I 5 HOH A 19 319 32 HOH HOH . I 5 HOH A 20 320 34 HOH HOH . I 5 HOH A 21 321 35 HOH HOH . I 5 HOH A 22 322 37 HOH HOH . I 5 HOH A 23 323 41 HOH HOH . I 5 HOH A 24 324 50 HOH HOH . I 5 HOH A 25 325 53 HOH HOH . I 5 HOH A 26 326 56 HOH HOH . I 5 HOH A 27 327 57 HOH HOH . I 5 HOH A 28 328 59 HOH HOH . I 5 HOH A 29 329 61 HOH HOH . I 5 HOH A 30 330 63 HOH HOH . I 5 HOH A 31 331 64 HOH HOH . I 5 HOH A 32 332 65 HOH HOH . I 5 HOH A 33 333 66 HOH HOH . I 5 HOH A 34 334 68 HOH HOH . I 5 HOH A 35 335 69 HOH HOH . I 5 HOH A 36 336 70 HOH HOH . I 5 HOH A 37 337 71 HOH HOH . I 5 HOH A 38 338 74 HOH HOH . I 5 HOH A 39 339 75 HOH HOH . I 5 HOH A 40 340 77 HOH HOH . I 5 HOH A 41 341 80 HOH HOH . I 5 HOH A 42 342 81 HOH HOH . I 5 HOH A 43 343 82 HOH HOH . I 5 HOH A 44 344 84 HOH HOH . I 5 HOH A 45 345 86 HOH HOH . I 5 HOH A 46 346 88 HOH HOH . I 5 HOH A 47 347 93 HOH HOH . I 5 HOH A 48 348 96 HOH HOH . I 5 HOH A 49 349 98 HOH HOH . I 5 HOH A 50 350 99 HOH HOH . I 5 HOH A 51 351 100 HOH HOH . I 5 HOH A 52 352 101 HOH HOH . I 5 HOH A 53 353 103 HOH HOH . I 5 HOH A 54 354 104 HOH HOH . I 5 HOH A 55 355 105 HOH HOH . I 5 HOH A 56 356 107 HOH HOH . I 5 HOH A 57 357 109 HOH HOH . I 5 HOH A 58 358 115 HOH HOH . I 5 HOH A 59 359 118 HOH HOH . I 5 HOH A 60 360 119 HOH HOH . I 5 HOH A 61 361 123 HOH HOH . I 5 HOH A 62 362 124 HOH HOH . I 5 HOH A 63 363 128 HOH HOH . I 5 HOH A 64 364 129 HOH HOH . I 5 HOH A 65 365 130 HOH HOH . I 5 HOH A 66 366 132 HOH HOH . I 5 HOH A 67 367 135 HOH HOH . I 5 HOH A 68 368 136 HOH HOH . I 5 HOH A 69 369 137 HOH HOH . I 5 HOH A 70 370 138 HOH HOH . I 5 HOH A 71 371 141 HOH HOH . I 5 HOH A 72 372 142 HOH HOH . I 5 HOH A 73 373 146 HOH HOH . I 5 HOH A 74 374 149 HOH HOH . I 5 HOH A 75 375 158 HOH HOH . I 5 HOH A 76 376 162 HOH HOH . I 5 HOH A 77 377 163 HOH HOH . I 5 HOH A 78 378 168 HOH HOH . I 5 HOH A 79 379 169 HOH HOH . I 5 HOH A 80 380 170 HOH HOH . I 5 HOH A 81 381 171 HOH HOH . I 5 HOH A 82 382 175 HOH HOH . I 5 HOH A 83 383 176 HOH HOH . I 5 HOH A 84 384 181 HOH HOH . I 5 HOH A 85 385 184 HOH HOH . I 5 HOH A 86 386 189 HOH HOH . I 5 HOH A 87 387 190 HOH HOH . I 5 HOH A 88 388 194 HOH HOH . I 5 HOH A 89 389 195 HOH HOH . I 5 HOH A 90 390 196 HOH HOH . I 5 HOH A 91 391 197 HOH HOH . I 5 HOH A 92 392 200 HOH HOH . I 5 HOH A 93 393 203 HOH HOH . I 5 HOH A 94 394 207 HOH HOH . I 5 HOH A 95 395 209 HOH HOH . I 5 HOH A 96 396 210 HOH HOH . I 5 HOH A 97 397 211 HOH HOH . I 5 HOH A 98 398 215 HOH HOH . I 5 HOH A 99 399 217 HOH HOH . I 5 HOH A 100 400 218 HOH HOH . I 5 HOH A 101 401 219 HOH HOH . I 5 HOH A 102 402 221 HOH HOH . I 5 HOH A 103 403 224 HOH HOH . I 5 HOH A 104 404 229 HOH HOH . I 5 HOH A 105 405 231 HOH HOH . I 5 HOH A 106 406 232 HOH HOH . I 5 HOH A 107 407 234 HOH HOH . I 5 HOH A 108 408 236 HOH HOH . I 5 HOH A 109 409 237 HOH HOH . I 5 HOH A 110 410 238 HOH HOH . I 5 HOH A 111 411 240 HOH HOH . I 5 HOH A 112 412 241 HOH HOH . I 5 HOH A 113 413 243 HOH HOH . I 5 HOH A 114 414 244 HOH HOH . I 5 HOH A 115 415 245 HOH HOH . I 5 HOH A 116 416 247 HOH HOH . I 5 HOH A 117 417 250 HOH HOH . I 5 HOH A 118 418 253 HOH HOH . I 5 HOH A 119 419 255 HOH HOH . I 5 HOH A 120 420 257 HOH HOH . I 5 HOH A 121 421 260 HOH HOH . I 5 HOH A 122 422 262 HOH HOH . I 5 HOH A 123 423 264 HOH HOH . I 5 HOH A 124 424 265 HOH HOH . I 5 HOH A 125 425 266 HOH HOH . I 5 HOH A 126 426 270 HOH HOH . I 5 HOH A 127 427 274 HOH HOH . I 5 HOH A 128 428 277 HOH HOH . I 5 HOH A 129 429 279 HOH HOH . I 5 HOH A 130 430 284 HOH HOH . I 5 HOH A 131 431 287 HOH HOH . I 5 HOH A 132 432 290 HOH HOH . I 5 HOH A 133 433 291 HOH HOH . I 5 HOH A 134 434 294 HOH HOH . I 5 HOH A 135 435 297 HOH HOH . I 5 HOH A 136 436 298 HOH HOH . I 5 HOH A 137 437 300 HOH HOH . I 5 HOH A 138 438 301 HOH HOH . I 5 HOH A 139 439 302 HOH HOH . I 5 HOH A 140 440 308 HOH HOH . I 5 HOH A 141 441 309 HOH HOH . I 5 HOH A 142 442 314 HOH HOH . I 5 HOH A 143 443 321 HOH HOH . I 5 HOH A 144 444 325 HOH HOH . I 5 HOH A 145 445 327 HOH HOH . I 5 HOH A 146 446 328 HOH HOH . I 5 HOH A 147 447 334 HOH HOH . I 5 HOH A 148 448 335 HOH HOH . I 5 HOH A 149 449 337 HOH HOH . I 5 HOH A 150 450 342 HOH HOH . I 5 HOH A 151 451 350 HOH HOH . I 5 HOH A 152 452 352 HOH HOH . I 5 HOH A 153 453 353 HOH HOH . I 5 HOH A 154 454 354 HOH HOH . I 5 HOH A 155 455 362 HOH HOH . I 5 HOH A 156 456 364 HOH HOH . I 5 HOH A 157 457 230 HOH HOH . J 5 HOH B 1 301 186 HOH HOH . J 5 HOH B 2 302 1 HOH HOH . J 5 HOH B 3 303 4 HOH HOH . J 5 HOH B 4 304 5 HOH HOH . J 5 HOH B 5 305 9 HOH HOH . J 5 HOH B 6 306 11 HOH HOH . J 5 HOH B 7 307 12 HOH HOH . J 5 HOH B 8 308 13 HOH HOH . J 5 HOH B 9 309 15 HOH HOH . J 5 HOH B 10 310 16 HOH HOH . J 5 HOH B 11 311 20 HOH HOH . J 5 HOH B 12 312 21 HOH HOH . J 5 HOH B 13 313 25 HOH HOH . J 5 HOH B 14 314 27 HOH HOH . J 5 HOH B 15 315 33 HOH HOH . J 5 HOH B 16 316 36 HOH HOH . J 5 HOH B 17 317 38 HOH HOH . J 5 HOH B 18 318 39 HOH HOH . J 5 HOH B 19 319 40 HOH HOH . J 5 HOH B 20 320 42 HOH HOH . J 5 HOH B 21 321 43 HOH HOH . J 5 HOH B 22 322 44 HOH HOH . J 5 HOH B 23 323 45 HOH HOH . J 5 HOH B 24 324 47 HOH HOH . J 5 HOH B 25 325 49 HOH HOH . J 5 HOH B 26 326 51 HOH HOH . J 5 HOH B 27 327 52 HOH HOH . J 5 HOH B 28 328 54 HOH HOH . J 5 HOH B 29 329 55 HOH HOH . J 5 HOH B 30 330 58 HOH HOH . J 5 HOH B 31 331 60 HOH HOH . J 5 HOH B 32 332 62 HOH HOH . J 5 HOH B 33 333 72 HOH HOH . J 5 HOH B 34 334 73 HOH HOH . J 5 HOH B 35 335 76 HOH HOH . J 5 HOH B 36 336 78 HOH HOH . J 5 HOH B 37 337 79 HOH HOH . J 5 HOH B 38 338 83 HOH HOH . J 5 HOH B 39 339 85 HOH HOH . J 5 HOH B 40 340 87 HOH HOH . J 5 HOH B 41 341 89 HOH HOH . J 5 HOH B 42 342 90 HOH HOH . J 5 HOH B 43 343 91 HOH HOH . J 5 HOH B 44 344 92 HOH HOH . J 5 HOH B 45 345 94 HOH HOH . J 5 HOH B 46 346 95 HOH HOH . J 5 HOH B 47 347 97 HOH HOH . J 5 HOH B 48 348 102 HOH HOH . J 5 HOH B 49 349 106 HOH HOH . J 5 HOH B 50 350 108 HOH HOH . J 5 HOH B 51 351 110 HOH HOH . J 5 HOH B 52 352 111 HOH HOH . J 5 HOH B 53 353 112 HOH HOH . J 5 HOH B 54 354 113 HOH HOH . J 5 HOH B 55 355 114 HOH HOH . J 5 HOH B 56 356 116 HOH HOH . J 5 HOH B 57 357 117 HOH HOH . J 5 HOH B 58 358 120 HOH HOH . J 5 HOH B 59 359 121 HOH HOH . J 5 HOH B 60 360 122 HOH HOH . J 5 HOH B 61 361 125 HOH HOH . J 5 HOH B 62 362 126 HOH HOH . J 5 HOH B 63 363 127 HOH HOH . J 5 HOH B 64 364 131 HOH HOH . J 5 HOH B 65 365 133 HOH HOH . J 5 HOH B 66 366 134 HOH HOH . J 5 HOH B 67 367 139 HOH HOH . J 5 HOH B 68 368 140 HOH HOH . J 5 HOH B 69 369 143 HOH HOH . J 5 HOH B 70 370 144 HOH HOH . J 5 HOH B 71 371 145 HOH HOH . J 5 HOH B 72 372 147 HOH HOH . J 5 HOH B 73 373 148 HOH HOH . J 5 HOH B 74 374 150 HOH HOH . J 5 HOH B 75 375 151 HOH HOH . J 5 HOH B 76 376 152 HOH HOH . J 5 HOH B 77 377 153 HOH HOH . J 5 HOH B 78 378 154 HOH HOH . J 5 HOH B 79 379 155 HOH HOH . J 5 HOH B 80 380 156 HOH HOH . J 5 HOH B 81 381 157 HOH HOH . J 5 HOH B 82 382 159 HOH HOH . J 5 HOH B 83 383 160 HOH HOH . J 5 HOH B 84 384 161 HOH HOH . J 5 HOH B 85 385 164 HOH HOH . J 5 HOH B 86 386 165 HOH HOH . J 5 HOH B 87 387 167 HOH HOH . J 5 HOH B 88 388 172 HOH HOH . J 5 HOH B 89 389 173 HOH HOH . J 5 HOH B 90 390 174 HOH HOH . J 5 HOH B 91 391 177 HOH HOH . J 5 HOH B 92 392 179 HOH HOH . J 5 HOH B 93 393 180 HOH HOH . J 5 HOH B 94 394 183 HOH HOH . J 5 HOH B 95 395 185 HOH HOH . J 5 HOH B 96 396 187 HOH HOH . J 5 HOH B 97 397 188 HOH HOH . J 5 HOH B 98 398 191 HOH HOH . J 5 HOH B 99 399 192 HOH HOH . J 5 HOH B 100 400 193 HOH HOH . J 5 HOH B 101 401 198 HOH HOH . J 5 HOH B 102 402 199 HOH HOH . J 5 HOH B 103 403 201 HOH HOH . J 5 HOH B 104 404 202 HOH HOH . J 5 HOH B 105 405 204 HOH HOH . J 5 HOH B 106 406 205 HOH HOH . J 5 HOH B 107 407 206 HOH HOH . J 5 HOH B 108 408 212 HOH HOH . J 5 HOH B 109 409 213 HOH HOH . J 5 HOH B 110 410 220 HOH HOH . J 5 HOH B 111 411 222 HOH HOH . J 5 HOH B 112 412 223 HOH HOH . J 5 HOH B 113 413 225 HOH HOH . J 5 HOH B 114 414 226 HOH HOH . J 5 HOH B 115 415 227 HOH HOH . J 5 HOH B 116 416 228 HOH HOH . J 5 HOH B 117 417 235 HOH HOH . J 5 HOH B 118 418 242 HOH HOH . J 5 HOH B 119 419 246 HOH HOH . J 5 HOH B 120 420 249 HOH HOH . J 5 HOH B 121 421 251 HOH HOH . J 5 HOH B 122 422 252 HOH HOH . J 5 HOH B 123 423 254 HOH HOH . J 5 HOH B 124 424 258 HOH HOH . J 5 HOH B 125 425 259 HOH HOH . J 5 HOH B 126 426 261 HOH HOH . J 5 HOH B 127 427 267 HOH HOH . J 5 HOH B 128 428 268 HOH HOH . J 5 HOH B 129 429 269 HOH HOH . J 5 HOH B 130 430 275 HOH HOH . J 5 HOH B 131 431 282 HOH HOH . J 5 HOH B 132 432 295 HOH HOH . J 5 HOH B 133 433 303 HOH HOH . J 5 HOH B 134 434 305 HOH HOH . J 5 HOH B 135 435 310 HOH HOH . J 5 HOH B 136 436 319 HOH HOH . J 5 HOH B 137 437 322 HOH HOH . J 5 HOH B 138 438 323 HOH HOH . J 5 HOH B 139 439 336 HOH HOH . J 5 HOH B 140 440 339 HOH HOH . J 5 HOH B 141 441 340 HOH HOH . J 5 HOH B 142 442 341 HOH HOH . J 5 HOH B 143 443 343 HOH HOH . J 5 HOH B 144 444 344 HOH HOH . J 5 HOH B 145 445 345 HOH HOH . J 5 HOH B 146 446 356 HOH HOH . J 5 HOH B 147 447 357 HOH HOH . J 5 HOH B 148 448 358 HOH HOH . J 5 HOH B 149 449 360 HOH HOH . J 5 HOH B 150 450 361 HOH HOH . J 5 HOH B 151 451 363 HOH HOH . J 5 HOH B 152 452 366 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 6.532 -13.388 -6.655 1 22.24 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . D 3 5.703 -12.266 -6.994 1 18.54 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . D 3 5.654 -14.617 -6.425 1 23.54 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . D 3 4.667 -14.346 -5.41 1 24.61 ? O2 EDO 202 A 1 HETATM 5 H H11 EDO . . . D 3 7.239 -13.583 -7.464 1 26.69 ? H11 EDO 202 A 1 HETATM 6 H H12 EDO . . . D 3 7.102 -13.166 -5.75 1 26.69 ? H12 EDO 202 A 1 HETATM 7 H HO1 EDO . . . D 3 6.258 -11.487 -7.139 1 22.25 ? HO1 EDO 202 A 1 HETATM 8 H H21 EDO . . . D 3 5.155 -14.889 -7.358 1 28.25 ? H21 EDO 202 A 1 HETATM 9 H H22 EDO . . . D 3 6.276 -15.459 -6.116 1 28.25 ? H22 EDO 202 A 1 HETATM 10 H HO2 EDO . . . D 3 4.119 -15.131 -5.276 1 29.53 ? HO2 EDO 202 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #