data_4O75 # _model_server_result.job_id 6wvNYR-PJYzYHjMKHl8r4Q _model_server_result.datetime_utc '2024-11-21 23:52:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4O75 # _exptl.entry_id 4O75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-3-oxo-2,3-dihydro-4H-pyrido[3,2-b][1,4]oxazin-4-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O75 _cell.length_a 42.939 _cell.length_b 49.61 _cell.length_c 60.845 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 F N6 O9 P' _chem_comp.formula_weight 580.46 _chem_comp.id 2RC _chem_comp.mon_nstd_flag . _chem_comp.name '[6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-3-oxo-2,3-dihydro-4H-pyrido[3,2-b][1,4]oxazin-4-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Fostamatinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C39 O38 2RC sing 1 n n O38 C37 2RC sing 2 n n C20 C15 2RC sing 3 n n O16 C17 2RC sing 4 n n O16 C15 2RC sing 5 n n C18 C17 2RC doub 6 n y C18 C19 2RC sing 7 n y C40 C37 2RC doub 8 n y C40 C29 2RC sing 9 n y C37 C34 2RC sing 10 n y C17 C11 2RC sing 11 n y C15 C21 2RC sing 12 n n C15 C13 2RC sing 13 n n C19 C09 2RC doub 14 n y N28 C29 2RC sing 15 n n N28 C05 2RC sing 16 n n O35 C34 2RC sing 17 n n O35 C36 2RC sing 18 n n C29 C30 2RC doub 19 n y C34 C31 2RC doub 20 n y C11 N12 2RC sing 21 n n C11 N10 2RC doub 22 n y C13 N12 2RC sing 23 n n C13 O14 2RC doub 24 n n C09 N10 2RC sing 25 n y C09 N08 2RC sing 26 n n N06 C05 2RC doub 27 n y N06 C07 2RC sing 28 n y C05 N04 2RC sing 29 n y C31 C30 2RC sing 30 n y C31 O32 2RC sing 31 n n N12 C22 2RC sing 32 n n N08 C07 2RC sing 33 n n C07 C02 2RC doub 34 n y O32 C33 2RC sing 35 n n C22 O23 2RC sing 36 n n N04 C03 2RC doub 37 n y C02 C03 2RC sing 38 n y C02 F01 2RC sing 39 n n O23 P24 2RC sing 40 n n O26 P24 2RC doub 41 n n O25 P24 2RC sing 42 n n P24 O27 2RC sing 43 n n C03 H031 2RC sing 44 n n N08 H081 2RC sing 45 n n C18 H181 2RC sing 46 n n C19 H191 2RC sing 47 n n C20 H203 2RC sing 48 n n C20 H202 2RC sing 49 n n C20 H201 2RC sing 50 n n C21 H212 2RC sing 51 n n C21 H213 2RC sing 52 n n C21 H211 2RC sing 53 n n C22 H222 2RC sing 54 n n C22 H221 2RC sing 55 n n O25 H1 2RC sing 56 n n O27 H2 2RC sing 57 n n N28 H281 2RC sing 58 n n C30 H301 2RC sing 59 n n C33 H333 2RC sing 60 n n C33 H331 2RC sing 61 n n C33 H332 2RC sing 62 n n C36 H363 2RC sing 63 n n C36 H362 2RC sing 64 n n C36 H361 2RC sing 65 n n C39 H391 2RC sing 66 n n C39 H392 2RC sing 67 n n C39 H393 2RC sing 68 n n C40 H401 2RC sing 69 n n # _atom_sites.entry_id 4O75 _atom_sites.fract_transf_matrix[1][1] 0.023289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2RC A 1 201 1 2RC LIG . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 8 HOH HOH . E 4 HOH A 9 309 9 HOH HOH . E 4 HOH A 10 310 10 HOH HOH . E 4 HOH A 11 311 11 HOH HOH . E 4 HOH A 12 312 12 HOH HOH . E 4 HOH A 13 313 13 HOH HOH . E 4 HOH A 14 314 14 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 16 HOH HOH . E 4 HOH A 17 317 17 HOH HOH . E 4 HOH A 18 318 18 HOH HOH . E 4 HOH A 19 319 19 HOH HOH . E 4 HOH A 20 320 20 HOH HOH . E 4 HOH A 21 321 21 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 24 HOH HOH . E 4 HOH A 25 325 25 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 27 HOH HOH . E 4 HOH A 28 328 28 HOH HOH . E 4 HOH A 29 329 29 HOH HOH . E 4 HOH A 30 330 30 HOH HOH . E 4 HOH A 31 331 31 HOH HOH . E 4 HOH A 32 332 32 HOH HOH . E 4 HOH A 33 333 33 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . E 4 HOH A 35 335 35 HOH HOH . E 4 HOH A 36 336 36 HOH HOH . E 4 HOH A 37 337 37 HOH HOH . E 4 HOH A 38 338 38 HOH HOH . E 4 HOH A 39 339 39 HOH HOH . E 4 HOH A 40 340 40 HOH HOH . E 4 HOH A 41 341 41 HOH HOH . E 4 HOH A 42 342 42 HOH HOH . E 4 HOH A 43 343 43 HOH HOH . E 4 HOH A 44 344 44 HOH HOH . E 4 HOH A 45 345 45 HOH HOH . E 4 HOH A 46 346 46 HOH HOH . E 4 HOH A 47 347 47 HOH HOH . E 4 HOH A 48 348 48 HOH HOH . E 4 HOH A 49 349 49 HOH HOH . E 4 HOH A 50 350 50 HOH HOH . E 4 HOH A 51 351 51 HOH HOH . E 4 HOH A 52 352 52 HOH HOH . E 4 HOH A 53 353 53 HOH HOH . E 4 HOH A 54 354 54 HOH HOH . E 4 HOH A 55 355 55 HOH HOH . E 4 HOH A 56 356 56 HOH HOH . E 4 HOH A 57 357 57 HOH HOH . E 4 HOH A 58 358 58 HOH HOH . E 4 HOH A 59 359 59 HOH HOH . E 4 HOH A 60 360 60 HOH HOH . E 4 HOH A 61 361 61 HOH HOH . E 4 HOH A 62 362 62 HOH HOH . E 4 HOH A 63 363 63 HOH HOH . E 4 HOH A 64 364 64 HOH HOH . E 4 HOH A 65 365 65 HOH HOH . E 4 HOH A 66 366 66 HOH HOH . E 4 HOH A 67 367 67 HOH HOH . E 4 HOH A 68 368 68 HOH HOH . E 4 HOH A 69 369 69 HOH HOH . E 4 HOH A 70 370 70 HOH HOH . E 4 HOH A 71 371 71 HOH HOH . E 4 HOH A 72 372 72 HOH HOH . E 4 HOH A 73 373 73 HOH HOH . E 4 HOH A 74 374 74 HOH HOH . E 4 HOH A 75 375 75 HOH HOH . E 4 HOH A 76 376 76 HOH HOH . E 4 HOH A 77 377 77 HOH HOH . E 4 HOH A 78 378 78 HOH HOH . E 4 HOH A 79 379 79 HOH HOH . E 4 HOH A 80 380 80 HOH HOH . E 4 HOH A 81 381 81 HOH HOH . E 4 HOH A 82 382 82 HOH HOH . E 4 HOH A 83 383 83 HOH HOH . E 4 HOH A 84 384 84 HOH HOH . E 4 HOH A 85 385 85 HOH HOH . E 4 HOH A 86 386 86 HOH HOH . E 4 HOH A 87 387 87 HOH HOH . E 4 HOH A 88 388 88 HOH HOH . E 4 HOH A 89 389 89 HOH HOH . E 4 HOH A 90 390 90 HOH HOH . E 4 HOH A 91 391 91 HOH HOH . E 4 HOH A 92 392 92 HOH HOH . E 4 HOH A 93 393 93 HOH HOH . E 4 HOH A 94 394 94 HOH HOH . E 4 HOH A 95 395 95 HOH HOH . E 4 HOH A 96 396 96 HOH HOH . E 4 HOH A 97 397 97 HOH HOH . E 4 HOH A 98 398 98 HOH HOH . E 4 HOH A 99 399 99 HOH HOH . E 4 HOH A 100 400 100 HOH HOH . E 4 HOH A 101 401 101 HOH HOH . E 4 HOH A 102 402 102 HOH HOH . E 4 HOH A 103 403 103 HOH HOH . E 4 HOH A 104 404 104 HOH HOH . E 4 HOH A 105 405 105 HOH HOH . E 4 HOH A 106 406 106 HOH HOH . E 4 HOH A 107 407 107 HOH HOH . E 4 HOH A 108 408 108 HOH HOH . E 4 HOH A 109 409 109 HOH HOH . E 4 HOH A 110 410 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F01 2RC . . . B 2 14.93 -1.928 13.24 1 40.22 ? F01 2RC 201 A 1 HETATM 2 C C02 2RC . . . B 2 14.784 -0.925 12.337 1 37.68 ? C02 2RC 201 A 1 HETATM 3 C C03 2RC . . . B 2 13.865 0.089 12.541 1 35.12 ? C03 2RC 201 A 1 HETATM 4 N N04 2RC . . . B 2 13.722 1.094 11.61 1 33.12 ? N04 2RC 201 A 1 HETATM 5 C C05 2RC . . . B 2 14.521 1.07 10.524 1 33.2 ? C05 2RC 201 A 1 HETATM 6 N N06 2RC . . . B 2 15.435 0.077 10.323 1 35.16 ? N06 2RC 201 A 1 HETATM 7 C C07 2RC . . . B 2 15.598 -0.919 11.188 1 37.28 ? C07 2RC 201 A 1 HETATM 8 N N08 2RC . . . B 2 16.566 -1.962 10.952 1 40.74 ? N08 2RC 201 A 1 HETATM 9 C C09 2RC . . . B 2 17.779 -1.674 10.26 1 43.85 ? C09 2RC 201 A 1 HETATM 10 N N10 2RC . . . B 2 18.914 -2.249 10.717 1 46.1 ? N10 2RC 201 A 1 HETATM 11 C C11 2RC . . . B 2 20.108 -2.022 10.095 1 47.79 ? C11 2RC 201 A 1 HETATM 12 N N12 2RC . . . B 2 21.261 -2.627 10.569 1 50.81 ? N12 2RC 201 A 1 HETATM 13 C C13 2RC . . . B 2 22.457 -2.344 10.17 1 50.14 ? C13 2RC 201 A 1 HETATM 14 O O14 2RC . . . B 2 23.388 -2.917 10.63 1 48.75 ? O14 2RC 201 A 1 HETATM 15 C C15 2RC . . . B 2 22.715 -1.304 9.12 1 50.45 ? C15 2RC 201 A 1 HETATM 16 O O16 2RC . . . B 2 21.564 -0.898 8.321 1 49.32 ? O16 2RC 201 A 1 HETATM 17 C C17 2RC . . . B 2 20.188 -1.17 8.982 1 47.49 ? C17 2RC 201 A 1 HETATM 18 C C18 2RC . . . B 2 19.04 -0.557 8.483 1 46.05 ? C18 2RC 201 A 1 HETATM 19 C C19 2RC . . . B 2 17.817 -0.815 9.144 1 45.27 ? C19 2RC 201 A 1 HETATM 20 C C20 2RC . . . B 2 23.718 -1.818 8.158 1 49.79 ? C20 2RC 201 A 1 HETATM 21 C C21 2RC . . . B 2 23.461 -0.098 9.78 1 52.21 ? C21 2RC 201 A 1 HETATM 22 C C22 2RC . . . B 2 21.07 -3.682 11.507 1 52.85 ? C22 2RC 201 A 1 HETATM 23 O O23 2RC . . . B 2 21.136 -3.276 12.839 1 54.57 ? O23 2RC 201 A 1 HETATM 24 P P24 2RC . . . B 2 21.28 -4.568 13.73 1 55.91 ? P24 2RC 201 A 1 HETATM 25 O O25 2RC . . . B 2 22.719 -5.032 13.678 1 55.24 ? O25 2RC 201 A 1 HETATM 26 O O26 2RC . . . B 2 20.389 -5.659 13.161 1 53.48 ? O26 2RC 201 A 1 HETATM 27 O O27 2RC . . . B 2 20.883 -4.231 15.154 1 58.43 ? O27 2RC 201 A 1 HETATM 28 N N28 2RC . . . B 2 14.528 2.049 9.455 1 31.96 ? N28 2RC 201 A 1 HETATM 29 C C29 2RC . . . B 2 14.028 3.365 9.577 1 31.35 ? C29 2RC 201 A 1 HETATM 30 C C30 2RC . . . B 2 13.086 3.761 10.556 1 32.2 ? C30 2RC 201 A 1 HETATM 31 C C31 2RC . . . B 2 12.652 5.093 10.545 1 31.43 ? C31 2RC 201 A 1 HETATM 32 O O32 2RC . . . B 2 11.68 5.681 11.458 1 28.54 ? O32 2RC 201 A 1 HETATM 33 C C33 2RC . . . B 2 11.062 4.922 12.509 1 28.8 ? C33 2RC 201 A 1 HETATM 34 C C34 2RC . . . B 2 13.184 5.936 9.583 1 32.85 ? C34 2RC 201 A 1 HETATM 35 O O35 2RC . . . B 2 12.8 7.286 9.554 1 31.34 ? O35 2RC 201 A 1 HETATM 36 C C36 2RC . . . B 2 13.556 8.023 10.497 1 29.41 ? C36 2RC 201 A 1 HETATM 37 C C37 2RC . . . B 2 14.124 5.522 8.626 1 35.13 ? C37 2RC 201 A 1 HETATM 38 O O38 2RC . . . B 2 14.602 6.436 7.66 1 38.68 ? O38 2RC 201 A 1 HETATM 39 C C39 2RC . . . B 2 13.982 6.171 6.435 1 40.33 ? C39 2RC 201 A 1 HETATM 40 C C40 2RC . . . B 2 14.554 4.227 8.619 1 32.71 ? C40 2RC 201 A 1 HETATM 41 H H031 2RC . . . B 2 13.294 0.08 13.346 1 42.14 ? H031 2RC 201 A 1 HETATM 42 H H081 2RC . . . B 2 16.35 -2.832 11.14 1 48.88 ? H081 2RC 201 A 1 HETATM 43 H H181 2RC . . . B 2 19.082 0.048 7.715 1 55.26 ? H181 2RC 201 A 1 HETATM 44 H H191 2RC . . . B 2 17.007 -0.404 8.829 1 54.33 ? H191 2RC 201 A 1 HETATM 45 H H203 2RC . . . B 2 23.314 -2.499 7.607 1 59.75 ? H203 2RC 201 A 1 HETATM 46 H H202 2RC . . . B 2 24.024 -1.104 7.607 1 59.75 ? H202 2RC 201 A 1 HETATM 47 H H201 2RC . . . B 2 24.5 -2.215 8.665 1 59.75 ? H201 2RC 201 A 1 HETATM 48 H H212 2RC . . . B 2 23.573 0.585 9.145 1 62.65 ? H212 2RC 201 A 1 HETATM 49 H H213 2RC . . . B 2 24.34 -0.392 10.101 1 62.65 ? H213 2RC 201 A 1 HETATM 50 H H211 2RC . . . B 2 22.943 0.236 10.522 1 62.65 ? H211 2RC 201 A 1 HETATM 51 H H222 2RC . . . B 2 21.755 -4.395 11.34 1 63.42 ? H222 2RC 201 A 1 HETATM 52 H H221 2RC . . . B 2 20.173 -4.064 11.356 1 63.42 ? H221 2RC 201 A 1 HETATM 53 H H281 2RC . . . B 2 15.067 1.881 8.743 1 38.36 ? H281 2RC 201 A 1 HETATM 54 H H301 2RC . . . B 2 12.726 3.102 11.226 1 38.65 ? H301 2RC 201 A 1 HETATM 55 H H333 2RC . . . B 2 10.156 4.583 12.193 1 34.56 ? H333 2RC 201 A 1 HETATM 56 H H331 2RC . . . B 2 11.63 4.164 12.738 1 34.56 ? H331 2RC 201 A 1 HETATM 57 H H332 2RC . . . B 2 10.941 5.494 13.305 1 34.56 ? H332 2RC 201 A 1 HETATM 58 H H363 2RC . . . B 2 13.806 8.869 10.119 1 35.3 ? H363 2RC 201 A 1 HETATM 59 H H362 2RC . . . B 2 14.35 7.528 10.73 1 35.3 ? H362 2RC 201 A 1 HETATM 60 H H361 2RC . . . B 2 13.022 8.171 11.29 1 35.3 ? H361 2RC 201 A 1 HETATM 61 H H391 2RC . . . B 2 14.59 5.701 5.867 1 48.39 ? H391 2RC 201 A 1 HETATM 62 H H392 2RC . . . B 2 13.722 7.019 6.009 1 48.39 ? H392 2RC 201 A 1 HETATM 63 H H393 2RC . . . B 2 13.192 5.628 6.583 1 48.39 ? H393 2RC 201 A 1 HETATM 64 H H401 2RC . . . B 2 15.211 3.905 7.938 1 39.25 ? H401 2RC 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 64 #