data_4O79 # _model_server_result.job_id l1g67FUY4nAbVswMW32IMg _model_server_result.datetime_utc '2025-02-26 21:56:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4O79 # _exptl.entry_id 4O79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O79 _cell.length_a 73.193 _cell.length_b 108.648 _cell.length_c 111.389 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A NE2 HIS 84 A HIS 84 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A NE2 HIS 118 A HIS 118 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc4 A NE2 HIS 157 A HIS 157 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 B NE2 HIS 51 B HIS 51 1_555 F FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B NE2 HIS 84 B HIS 84 1_555 G FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 B NE2 HIS 118 B HIS 118 1_555 F FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc8 B NE2 HIS 157 B HIS 157 1_555 G FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 149 n n CHA C4D HEM doub 150 n n CHA HHA HEM sing 151 n n CHB C4A HEM sing 152 n n CHB C1B HEM doub 153 n n CHB HHB HEM sing 154 n n CHC C4B HEM sing 155 n n CHC C1C HEM doub 156 n n CHC HHC HEM sing 157 n n CHD C4C HEM doub 158 n n CHD C1D HEM sing 159 n n CHD HHD HEM sing 160 n n C1A C2A HEM doub 161 n y C1A NA HEM sing 162 n y C2A C3A HEM sing 163 n y C2A CAA HEM sing 164 n n C3A C4A HEM doub 165 n y C3A CMA HEM sing 166 n n C4A NA HEM sing 167 n y CMA HMA HEM sing 168 n n CMA HMAA HEM sing 169 n n CMA HMAB HEM sing 170 n n CAA CBA HEM sing 171 n n CAA HAA HEM sing 172 n n CAA HAAA HEM sing 173 n n CBA CGA HEM sing 174 n n CBA HBA HEM sing 175 n n CBA HBAA HEM sing 176 n n CGA O1A HEM doub 177 n n CGA O2A HEM sing 178 n n C1B C2B HEM sing 179 n n C1B NB HEM sing 180 n n C2B C3B HEM doub 181 n n C2B CMB HEM sing 182 n n C3B C4B HEM sing 183 n n C3B CAB HEM sing 184 n n C4B NB HEM doub 185 n n CMB HMB HEM sing 186 n n CMB HMBA HEM sing 187 n n CMB HMBB HEM sing 188 n n CAB CBB HEM doub 189 n n CAB HAB HEM sing 190 n n CBB HBB HEM sing 191 n n CBB HBBA HEM sing 192 n n C1C C2C HEM sing 193 n y C1C NC HEM sing 194 n y C2C C3C HEM doub 195 n y C2C CMC HEM sing 196 n n C3C C4C HEM sing 197 n y C3C CAC HEM sing 198 n n C4C NC HEM sing 199 n y CMC HMC HEM sing 200 n n CMC HMCA HEM sing 201 n n CMC HMCB HEM sing 202 n n CAC CBC HEM doub 203 n n CAC HAC HEM sing 204 n n CBC HBC HEM sing 205 n n CBC HBCA HEM sing 206 n n C1D C2D HEM sing 207 n n C1D ND HEM doub 208 n n C2D C3D HEM doub 209 n n C2D CMD HEM sing 210 n n C3D C4D HEM sing 211 n n C3D CAD HEM sing 212 n n C4D ND HEM sing 213 n n CMD HMD HEM sing 214 n n CMD HMDA HEM sing 215 n n CMD HMDB HEM sing 216 n n CAD CBD HEM sing 217 n n CAD HAD HEM sing 218 n n CAD HADA HEM sing 219 n n CBD CGD HEM sing 220 n n CBD HBD HEM sing 221 n n CBD HBDA HEM sing 222 n n CGD O1D HEM doub 223 n n CGD O2D HEM sing 224 n n O2A H2A HEM sing 225 n n O2D H2D HEM sing 226 n n FE NA HEM sing 227 n n FE NB HEM sing 228 n n FE NC HEM sing 229 n n FE ND HEM sing 230 n n # _atom_sites.entry_id 4O79 _atom_sites.fract_transf_matrix[1][1] 0.013663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 301 1 HEM HEM . D 2 HEM A 1 302 2 HEM HEM . E 3 SO4 A 1 303 1 SO4 SO4 . F 2 HEM B 1 301 3 HEM HEM . G 2 HEM B 1 302 4 HEM HEM . H 4 ASC B 1 303 1 ASC ASC . I 5 HOH A 1 401 5 HOH HOH . I 5 HOH A 2 402 6 HOH HOH . I 5 HOH A 3 403 7 HOH HOH . I 5 HOH A 4 404 8 HOH HOH . I 5 HOH A 5 405 9 HOH HOH . I 5 HOH A 6 406 10 HOH HOH . I 5 HOH A 7 407 11 HOH HOH . I 5 HOH A 8 408 15 HOH HOH . I 5 HOH A 9 409 20 HOH HOH . I 5 HOH A 10 410 21 HOH HOH . I 5 HOH A 11 411 24 HOH HOH . I 5 HOH A 12 412 25 HOH HOH . I 5 HOH A 13 413 28 HOH HOH . I 5 HOH A 14 414 30 HOH HOH . I 5 HOH A 15 415 31 HOH HOH . I 5 HOH A 16 416 32 HOH HOH . I 5 HOH A 17 417 33 HOH HOH . I 5 HOH A 18 418 37 HOH HOH . I 5 HOH A 19 419 40 HOH HOH . I 5 HOH A 20 420 41 HOH HOH . I 5 HOH A 21 421 43 HOH HOH . I 5 HOH A 22 422 45 HOH HOH . I 5 HOH A 23 423 46 HOH HOH . I 5 HOH A 24 424 47 HOH HOH . I 5 HOH A 25 425 48 HOH HOH . I 5 HOH A 26 426 52 HOH HOH . I 5 HOH A 27 427 54 HOH HOH . I 5 HOH A 28 428 57 HOH HOH . I 5 HOH A 29 429 60 HOH HOH . I 5 HOH A 30 430 64 HOH HOH . I 5 HOH A 31 431 65 HOH HOH . I 5 HOH A 32 432 66 HOH HOH . J 5 HOH B 1 401 1 HOH HOH . J 5 HOH B 2 402 2 HOH HOH . J 5 HOH B 3 403 3 HOH HOH . J 5 HOH B 4 404 4 HOH HOH . J 5 HOH B 5 405 12 HOH HOH . J 5 HOH B 6 406 13 HOH HOH . J 5 HOH B 7 407 14 HOH HOH . J 5 HOH B 8 408 16 HOH HOH . J 5 HOH B 9 409 17 HOH HOH . J 5 HOH B 10 410 18 HOH HOH . J 5 HOH B 11 411 19 HOH HOH . J 5 HOH B 12 412 22 HOH HOH . J 5 HOH B 13 413 23 HOH HOH . J 5 HOH B 14 414 26 HOH HOH . J 5 HOH B 15 415 27 HOH HOH . J 5 HOH B 16 416 29 HOH HOH . J 5 HOH B 17 417 34 HOH HOH . J 5 HOH B 18 418 35 HOH HOH . J 5 HOH B 19 419 36 HOH HOH . J 5 HOH B 20 420 38 HOH HOH . J 5 HOH B 21 421 39 HOH HOH . J 5 HOH B 22 422 42 HOH HOH . J 5 HOH B 23 423 44 HOH HOH . J 5 HOH B 24 424 49 HOH HOH . J 5 HOH B 25 425 50 HOH HOH . J 5 HOH B 26 426 51 HOH HOH . J 5 HOH B 27 427 53 HOH HOH . J 5 HOH B 28 428 55 HOH HOH . J 5 HOH B 29 429 56 HOH HOH . J 5 HOH B 30 430 58 HOH HOH . J 5 HOH B 31 431 59 HOH HOH . J 5 HOH B 32 432 61 HOH HOH . J 5 HOH B 33 433 62 HOH HOH . J 5 HOH B 34 434 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 2 7.647 43.045 -34.229 1 29.68 ? CHA HEM 302 A 1 HETATM 2 C CHB HEM . . . D 2 6.888 38.283 -33.588 1 32.03 ? CHB HEM 302 A 1 HETATM 3 C CHC HEM . . . D 2 3.776 38.301 -37.336 1 26.77 ? CHC HEM 302 A 1 HETATM 4 C CHD HEM . . . D 2 4.04 43.148 -37.557 1 30.56 ? CHD HEM 302 A 1 HETATM 5 C C1A HEM . . . D 2 7.764 41.747 -33.773 1 34.08 ? C1A HEM 302 A 1 HETATM 6 C C2A HEM . . . D 2 8.726 41.27 -32.793 1 37.99 ? C2A HEM 302 A 1 HETATM 7 C C3A HEM . . . D 2 8.515 39.957 -32.614 1 38.37 ? C3A HEM 302 A 1 HETATM 8 C C4A HEM . . . D 2 7.421 39.549 -33.479 1 34.57 ? C4A HEM 302 A 1 HETATM 9 C CMA HEM . . . D 2 9.284 39.006 -31.67 1 33.23 ? CMA HEM 302 A 1 HETATM 10 C CAA HEM . . . D 2 9.791 42.159 -32.114 1 35.02 ? CAA HEM 302 A 1 HETATM 11 C CBA HEM . . . D 2 10.866 42.48 -33.16 1 37.18 ? CBA HEM 302 A 1 HETATM 12 C CGA HEM . . . D 2 11.783 43.586 -32.691 1 51.93 ? CGA HEM 302 A 1 HETATM 13 O O1A HEM . . . D 2 11.452 44.294 -31.695 1 49.73 ? O1A HEM 302 A 1 HETATM 14 O O2A HEM . . . D 2 12.853 43.765 -33.327 1 49.56 ? O2A HEM 302 A 1 HETATM 15 C C1B HEM . . . D 2 6.02 37.87 -34.58 1 31.06 ? C1B HEM 302 A 1 HETATM 16 C C2B HEM . . . D 2 5.67 36.496 -34.87 1 28.71 ? C2B HEM 302 A 1 HETATM 17 C C3B HEM . . . D 2 4.798 36.504 -35.898 1 31.95 ? C3B HEM 302 A 1 HETATM 18 C C4B HEM . . . D 2 4.599 37.882 -36.303 1 34.09 ? C4B HEM 302 A 1 HETATM 19 C CMB HEM . . . D 2 6.218 35.27 -34.084 1 24.21 ? CMB HEM 302 A 1 HETATM 20 C CAB HEM . . . D 2 4.135 35.314 -36.644 1 40.63 ? CAB HEM 302 A 1 HETATM 21 C CBB HEM . . . D 2 3.532 34.167 -35.812 1 40.94 ? CBB HEM 302 A 1 HETATM 22 C C1C HEM . . . D 2 3.562 39.61 -37.738 1 31.17 ? C1C HEM 302 A 1 HETATM 23 C C2C HEM . . . D 2 2.696 40.066 -38.816 1 34.68 ? C2C HEM 302 A 1 HETATM 24 C C3C HEM . . . D 2 2.785 41.4 -38.884 1 34.82 ? C3C HEM 302 A 1 HETATM 25 C C4C HEM . . . D 2 3.688 41.845 -37.842 1 32.26 ? C4C HEM 302 A 1 HETATM 26 C CMC HEM . . . D 2 1.86 39.159 -39.739 1 38.38 ? CMC HEM 302 A 1 HETATM 27 C CAC HEM . . . D 2 2.045 42.324 -39.884 1 38.43 ? CAC HEM 302 A 1 HETATM 28 C CBC HEM . . . D 2 3.059 43.21 -40.648 1 37.17 ? CBC HEM 302 A 1 HETATM 29 C C1D HEM . . . D 2 5.013 43.563 -36.683 1 29.97 ? C1D HEM 302 A 1 HETATM 30 C C2D HEM . . . D 2 5.357 44.946 -36.454 1 35.15 ? C2D HEM 302 A 1 HETATM 31 C C3D HEM . . . D 2 6.472 44.918 -35.409 1 40.19 ? C3D HEM 302 A 1 HETATM 32 C C4D HEM . . . D 2 6.706 43.521 -35.119 1 32.28 ? C4D HEM 302 A 1 HETATM 33 C CMD HEM . . . D 2 4.729 46.193 -37.109 1 34.63 ? CMD HEM 302 A 1 HETATM 34 C CAD HEM . . . D 2 7.207 46.139 -34.827 1 36.5 ? CAD HEM 302 A 1 HETATM 35 C CBD HEM . . . D 2 8.454 46.366 -35.669 1 34.45 ? CBD HEM 302 A 1 HETATM 36 C CGD HEM . . . D 2 9.024 47.726 -35.318 1 45.64 ? CGD HEM 302 A 1 HETATM 37 O O1D HEM . . . D 2 8.246 48.701 -35.193 1 39.98 ? O1D HEM 302 A 1 HETATM 38 O O2D HEM . . . D 2 10.257 47.846 -35.155 1 52.15 ? O2D HEM 302 A 1 HETATM 39 N NA HEM . . . D 2 6.985 40.667 -34.164 1 37.02 ? NA HEM 302 A 1 HETATM 40 N NB HEM . . . D 2 5.344 38.694 -35.466 1 28.79 ? NB HEM 302 A 1 HETATM 41 N NC HEM . . . D 2 4.136 40.731 -37.17 1 31.9 ? NC HEM 302 A 1 HETATM 42 N ND HEM . . . D 2 5.834 42.756 -35.894 1 34 ? ND HEM 302 A 1 HETATM 43 FE FE HEM . . . D 2 5.583 40.714 -35.678 1 33.05 ? FE HEM 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #