data_4O7C # _model_server_result.job_id 2gjndFdsPAjSuLZ-kpd-PA _model_server_result.datetime_utc '2024-11-05 12:37:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4O7C # _exptl.entry_id 4O7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.451 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(5Z)-5-(1-nitroso-2,3-dihydro-5H-inden-5-ylidene)-2-(piperidin-4-yl)-3,5-dihydro-4H-imidazol-4-ylidene]-1,4-dihydropyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O7C _cell.length_a 36.735 _cell.length_b 46.226 _cell.length_c 77.556 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H23 N5 O' _chem_comp.formula_weight 373.451 _chem_comp.id 2RK _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(5Z)-5-(1-nitroso-2,3-dihydro-5H-inden-5-ylidene)-2-(piperidin-4-yl)-3,5-dihydro-4H-imidazol-4-ylidene]-1,4-dihydropyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N25 C24 2RK sing 1 n n N25 C26 2RK sing 2 n n C24 C23 2RK doub 3 n n C26 C27 2RK doub 4 n n C23 C22 2RK sing 5 n n C27 C22 2RK sing 6 n n C22 C21 2RK doub 7 n n C21 N28 2RK sing 8 n n C21 C09 2RK sing 9 n n C12 C11 2RK doub 10 n n C12 C13 2RK sing 11 n n C11 C10 2RK sing 12 n n O20 N19 2RK doub 13 n n N19 C14 2RK sing 14 n n N28 C07 2RK sing 15 n n C13 C14 2RK doub 16 n n C13 C17 2RK sing 17 n n C14 C15 2RK sing 18 n n C10 C09 2RK doub 19 z n C10 C18 2RK sing 20 n n C09 N08 2RK sing 21 n n C17 C18 2RK doub 22 n n C17 C16 2RK sing 23 n n C15 C16 2RK sing 24 n n C07 N08 2RK doub 25 n n C07 C06 2RK sing 26 n n C01 C06 2RK sing 27 n n C01 C02 2RK sing 28 n n C06 C05 2RK sing 29 n n C05 C04 2RK sing 30 n n C02 N03 2RK sing 31 n n N03 C04 2RK sing 32 n n C01 H011 2RK sing 33 n n C01 H012 2RK sing 34 n n C02 H022 2RK sing 35 n n C02 H021 2RK sing 36 n n N03 H031 2RK sing 37 n n C04 H041 2RK sing 38 n n C04 H042 2RK sing 39 n n C05 H051 2RK sing 40 n n C05 H052 2RK sing 41 n n C06 H061 2RK sing 42 n n C11 H111 2RK sing 43 n n C12 H121 2RK sing 44 n n C15 H152 2RK sing 45 n n C15 H151 2RK sing 46 n n C16 H162 2RK sing 47 n n C16 H161 2RK sing 48 n n C18 H181 2RK sing 49 n n C23 H231 2RK sing 50 n n C24 H241 2RK sing 51 n n C26 H261 2RK sing 52 n n C27 H271 2RK sing 53 n n N25 H1 2RK sing 54 n n N28 H2 2RK sing 55 n n # _atom_sites.entry_id 4O7C _atom_sites.fract_transf_matrix[1][1] 0.027222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2RK A 1 201 1 2RK LIG . C 3 EDO A 1 202 1 EDO EDO . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 9 HOH HOH . D 4 HOH A 10 310 10 HOH HOH . D 4 HOH A 11 311 11 HOH HOH . D 4 HOH A 12 312 12 HOH HOH . D 4 HOH A 13 313 13 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 15 HOH HOH . D 4 HOH A 16 316 16 HOH HOH . D 4 HOH A 17 317 17 HOH HOH . D 4 HOH A 18 318 18 HOH HOH . D 4 HOH A 19 319 19 HOH HOH . D 4 HOH A 20 320 20 HOH HOH . D 4 HOH A 21 321 21 HOH HOH . D 4 HOH A 22 322 22 HOH HOH . D 4 HOH A 23 323 23 HOH HOH . D 4 HOH A 24 324 24 HOH HOH . D 4 HOH A 25 325 25 HOH HOH . D 4 HOH A 26 326 26 HOH HOH . D 4 HOH A 27 327 27 HOH HOH . D 4 HOH A 28 328 28 HOH HOH . D 4 HOH A 29 329 29 HOH HOH . D 4 HOH A 30 330 30 HOH HOH . D 4 HOH A 31 331 31 HOH HOH . D 4 HOH A 32 332 32 HOH HOH . D 4 HOH A 33 333 33 HOH HOH . D 4 HOH A 34 334 34 HOH HOH . D 4 HOH A 35 335 35 HOH HOH . D 4 HOH A 36 336 36 HOH HOH . D 4 HOH A 37 337 37 HOH HOH . D 4 HOH A 38 338 38 HOH HOH . D 4 HOH A 39 339 39 HOH HOH . D 4 HOH A 40 340 40 HOH HOH . D 4 HOH A 41 341 41 HOH HOH . D 4 HOH A 42 342 42 HOH HOH . D 4 HOH A 43 343 43 HOH HOH . D 4 HOH A 44 344 44 HOH HOH . D 4 HOH A 45 345 45 HOH HOH . D 4 HOH A 46 346 46 HOH HOH . D 4 HOH A 47 347 47 HOH HOH . D 4 HOH A 48 348 48 HOH HOH . D 4 HOH A 49 349 49 HOH HOH . D 4 HOH A 50 350 50 HOH HOH . D 4 HOH A 51 351 51 HOH HOH . D 4 HOH A 52 352 52 HOH HOH . D 4 HOH A 53 353 53 HOH HOH . D 4 HOH A 54 354 54 HOH HOH . D 4 HOH A 55 355 55 HOH HOH . D 4 HOH A 56 356 56 HOH HOH . D 4 HOH A 57 357 57 HOH HOH . D 4 HOH A 58 358 58 HOH HOH . D 4 HOH A 59 359 59 HOH HOH . D 4 HOH A 60 360 60 HOH HOH . D 4 HOH A 61 361 61 HOH HOH . D 4 HOH A 62 362 62 HOH HOH . D 4 HOH A 63 363 63 HOH HOH . D 4 HOH A 64 364 64 HOH HOH . D 4 HOH A 65 365 65 HOH HOH . D 4 HOH A 66 366 66 HOH HOH . D 4 HOH A 67 367 67 HOH HOH . D 4 HOH A 68 368 68 HOH HOH . D 4 HOH A 69 369 69 HOH HOH . D 4 HOH A 70 370 70 HOH HOH . D 4 HOH A 71 371 71 HOH HOH . D 4 HOH A 72 372 72 HOH HOH . D 4 HOH A 73 373 73 HOH HOH . D 4 HOH A 74 374 74 HOH HOH . D 4 HOH A 75 375 75 HOH HOH . D 4 HOH A 76 376 76 HOH HOH . D 4 HOH A 77 377 77 HOH HOH . D 4 HOH A 78 378 78 HOH HOH . D 4 HOH A 79 379 79 HOH HOH . D 4 HOH A 80 380 80 HOH HOH . D 4 HOH A 81 381 81 HOH HOH . D 4 HOH A 82 382 82 HOH HOH . D 4 HOH A 83 383 83 HOH HOH . D 4 HOH A 84 384 84 HOH HOH . D 4 HOH A 85 385 85 HOH HOH . D 4 HOH A 86 386 86 HOH HOH . D 4 HOH A 87 387 87 HOH HOH . D 4 HOH A 88 388 88 HOH HOH . D 4 HOH A 89 389 89 HOH HOH . D 4 HOH A 90 390 90 HOH HOH . D 4 HOH A 91 391 91 HOH HOH . D 4 HOH A 92 392 92 HOH HOH . D 4 HOH A 93 393 93 HOH HOH . D 4 HOH A 94 394 94 HOH HOH . D 4 HOH A 95 395 95 HOH HOH . D 4 HOH A 96 396 96 HOH HOH . D 4 HOH A 97 397 97 HOH HOH . D 4 HOH A 98 398 98 HOH HOH . D 4 HOH A 99 399 99 HOH HOH . D 4 HOH A 100 400 100 HOH HOH . D 4 HOH A 101 401 101 HOH HOH . D 4 HOH A 102 402 102 HOH HOH . D 4 HOH A 103 403 103 HOH HOH . D 4 HOH A 104 404 104 HOH HOH . D 4 HOH A 105 405 105 HOH HOH . D 4 HOH A 106 406 106 HOH HOH . D 4 HOH A 107 407 107 HOH HOH . D 4 HOH A 108 408 108 HOH HOH . D 4 HOH A 109 409 109 HOH HOH . D 4 HOH A 110 410 110 HOH HOH . D 4 HOH A 111 411 111 HOH HOH . D 4 HOH A 112 412 112 HOH HOH . D 4 HOH A 113 413 113 HOH HOH . D 4 HOH A 114 414 114 HOH HOH . D 4 HOH A 115 415 115 HOH HOH . D 4 HOH A 116 416 116 HOH HOH . D 4 HOH A 117 417 117 HOH HOH . D 4 HOH A 118 418 118 HOH HOH . D 4 HOH A 119 419 119 HOH HOH . D 4 HOH A 120 420 120 HOH HOH . D 4 HOH A 121 421 121 HOH HOH . D 4 HOH A 122 422 122 HOH HOH . D 4 HOH A 123 423 123 HOH HOH . D 4 HOH A 124 424 124 HOH HOH . D 4 HOH A 125 425 125 HOH HOH . D 4 HOH A 126 426 126 HOH HOH . D 4 HOH A 127 427 127 HOH HOH . D 4 HOH A 128 428 128 HOH HOH . D 4 HOH A 129 429 129 HOH HOH . D 4 HOH A 130 430 130 HOH HOH . D 4 HOH A 131 431 131 HOH HOH . D 4 HOH A 132 432 132 HOH HOH . D 4 HOH A 133 433 133 HOH HOH . D 4 HOH A 134 434 134 HOH HOH . D 4 HOH A 135 435 135 HOH HOH . D 4 HOH A 136 436 136 HOH HOH . D 4 HOH A 137 437 137 HOH HOH . D 4 HOH A 138 438 138 HOH HOH . D 4 HOH A 139 439 139 HOH HOH . D 4 HOH A 140 440 140 HOH HOH . D 4 HOH A 141 441 141 HOH HOH . D 4 HOH A 142 442 142 HOH HOH . D 4 HOH A 143 443 143 HOH HOH . D 4 HOH A 144 444 144 HOH HOH . D 4 HOH A 145 445 145 HOH HOH . D 4 HOH A 146 446 146 HOH HOH . D 4 HOH A 147 447 147 HOH HOH . D 4 HOH A 148 448 148 HOH HOH . D 4 HOH A 149 449 149 HOH HOH . D 4 HOH A 150 450 150 HOH HOH . D 4 HOH A 151 451 151 HOH HOH . D 4 HOH A 152 452 152 HOH HOH . D 4 HOH A 153 453 153 HOH HOH . D 4 HOH A 154 454 154 HOH HOH . D 4 HOH A 155 455 155 HOH HOH . D 4 HOH A 156 456 156 HOH HOH . D 4 HOH A 157 457 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 2RK . . . B 2 114.137 -8.156 2.665 1 11.44 ? C01 2RK 201 A 1 HETATM 2 C C02 2RK . . . B 2 113.065 -8.427 3.753 1 12.03 ? C02 2RK 201 A 1 HETATM 3 N N03 2RK . . . B 2 112.944 -9.864 4.05 1 12.82 ? N03 2RK 201 A 1 HETATM 4 C C04 2RK . . . B 2 114.21 -10.452 4.529 1 12.31 ? C04 2RK 201 A 1 HETATM 5 C C05 2RK . . . B 2 115.327 -10.268 3.473 1 10.5 ? C05 2RK 201 A 1 HETATM 6 C C06 2RK . . . B 2 115.502 -8.785 3.074 1 10.17 ? C06 2RK 201 A 1 HETATM 7 C C07 2RK . . . B 2 116.553 -8.652 2.031 1 9.49 ? C07 2RK 201 A 1 HETATM 8 N N08 2RK . . . B 2 117.712 -8.015 2.202 1 10.37 ? N08 2RK 201 A 1 HETATM 9 C C09 2RK . . . B 2 118.434 -8.113 1.085 1 10.42 ? C09 2RK 201 A 1 HETATM 10 C C10 2RK . . . B 2 119.707 -7.54 0.996 1 9.55 ? C10 2RK 201 A 1 HETATM 11 C C11 2RK . . . B 2 120.753 -8.128 0.22 1 9.73 ? C11 2RK 201 A 1 HETATM 12 C C12 2RK . . . B 2 122.047 -7.544 0.181 1 9.74 ? C12 2RK 201 A 1 HETATM 13 C C13 2RK . . . B 2 122.312 -6.363 0.867 1 8.09 ? C13 2RK 201 A 1 HETATM 14 C C14 2RK . . . B 2 123.438 -5.605 0.943 1 9.23 ? C14 2RK 201 A 1 HETATM 15 C C15 2RK . . . B 2 123.236 -4.458 1.814 1 9.79 ? C15 2RK 201 A 1 HETATM 16 C C16 2RK . . . B 2 121.77 -4.561 2.243 1 9.31 ? C16 2RK 201 A 1 HETATM 17 C C17 2RK . . . B 2 121.307 -5.781 1.593 1 8.76 ? C17 2RK 201 A 1 HETATM 18 C C18 2RK . . . B 2 120.026 -6.347 1.704 1 9.3 ? C18 2RK 201 A 1 HETATM 19 N N19 2RK . . . B 2 124.569 -5.819 0.348 1 9.67 ? N19 2RK 201 A 1 HETATM 20 O O20 2RK . . . B 2 125.44 -4.967 0.332 1 10.91 ? O20 2RK 201 A 1 HETATM 21 C C21 2RK . . . B 2 117.702 -8.851 0.147 1 10 ? C21 2RK 201 A 1 HETATM 22 C C22 2RK . . . B 2 117.964 -9.217 -1.186 1 10.59 ? C22 2RK 201 A 1 HETATM 23 C C23 2RK . . . B 2 118.65 -8.369 -2.042 1 11.36 ? C23 2RK 201 A 1 HETATM 24 C C24 2RK . . . B 2 118.898 -8.711 -3.324 1 13.35 ? C24 2RK 201 A 1 HETATM 25 N N25 2RK . . . B 2 118.458 -9.895 -3.793 1 14.02 ? N25 2RK 201 A 1 HETATM 26 C C26 2RK . . . B 2 117.77 -10.738 -2.996 1 14.41 ? C26 2RK 201 A 1 HETATM 27 C C27 2RK . . . B 2 117.515 -10.419 -1.707 1 11.83 ? C27 2RK 201 A 1 HETATM 28 N N28 2RK . . . B 2 116.549 -9.168 0.776 1 10.44 ? N28 2RK 201 A 1 HETATM 29 H H011 2RK . . . B 2 113.846 -8.536 1.807 1 13.73 ? H011 2RK 201 A 1 HETATM 30 H H012 2RK . . . B 2 114.248 -7.187 2.539 1 13.73 ? H012 2RK 201 A 1 HETATM 31 H H022 2RK . . . B 2 112.197 -8.091 3.436 1 14.44 ? H022 2RK 201 A 1 HETATM 32 H H021 2RK . . . B 2 113.312 -7.949 4.576 1 14.44 ? H021 2RK 201 A 1 HETATM 33 H H031 2RK . . . B 2 112.659 -10.316 3.288 1 15.38 ? H031 2RK 201 A 1 HETATM 34 H H041 2RK . . . B 2 114.081 -11.41 4.708 1 14.78 ? H041 2RK 201 A 1 HETATM 35 H H042 2RK . . . B 2 114.478 -10.016 5.37 1 14.78 ? H042 2RK 201 A 1 HETATM 36 H H051 2RK . . . B 2 115.099 -10.79 2.671 1 12.6 ? H051 2RK 201 A 1 HETATM 37 H H052 2RK . . . B 2 116.175 -10.602 3.843 1 12.6 ? H052 2RK 201 A 1 HETATM 38 H H061 2RK . . . B 2 116.038 -8.217 3.672 1 12.21 ? H061 2RK 201 A 1 HETATM 39 H H111 2RK . . . B 2 120.583 -8.958 -0.267 1 11.68 ? H111 2RK 201 A 1 HETATM 40 H H121 2RK . . . B 2 122.743 -7.946 -0.378 1 11.69 ? H121 2RK 201 A 1 HETATM 41 H H152 2RK . . . B 2 123.457 -3.633 1.328 1 11.75 ? H152 2RK 201 A 1 HETATM 42 H H151 2RK . . . B 2 123.829 -4.361 2.592 1 11.75 ? H151 2RK 201 A 1 HETATM 43 H H162 2RK . . . B 2 121.227 -3.846 1.842 1 11.17 ? H162 2RK 201 A 1 HETATM 44 H H161 2RK . . . B 2 121.646 -4.361 3.197 1 11.17 ? H161 2RK 201 A 1 HETATM 45 H H181 2RK . . . B 2 119.341 -5.902 2.245 1 11.16 ? H181 2RK 201 A 1 HETATM 46 H H231 2RK . . . B 2 118.977 -7.511 -1.705 1 13.63 ? H231 2RK 201 A 1 HETATM 47 H H241 2RK . . . B 2 119.393 -8.103 -3.909 1 16.02 ? H241 2RK 201 A 1 HETATM 48 H H261 2RK . . . B 2 117.459 -11.593 -3.352 1 17.3 ? H261 2RK 201 A 1 HETATM 49 H H271 2RK . . . B 2 117.02 -11.043 -1.139 1 14.19 ? H271 2RK 201 A 1 HETATM 50 H H2 2RK . . . B 2 115.857 -9.641 0.402 1 12.53 ? H2 2RK 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #