data_4O7D # _model_server_result.job_id M8u4B1XZjegHM94NMeJJeg _model_server_result.datetime_utc '2024-11-05 16:23:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4O7D # _exptl.entry_id 4O7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 145.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-OXO-L-NORLEUCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O7D _cell.length_a 139.278 _cell.length_b 139.278 _cell.length_c 155.502 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 155.502 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 155.502 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 68 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 286 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CE _struct_conn.ptnr2_label_comp_id ONL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ONL _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.426 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H11 N O3' _chem_comp.formula_weight 145.156 _chem_comp.id ONL _chem_comp.mon_nstd_flag . _chem_comp.name 5-OXO-L-NORLEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O7D _atom_sites.fract_transf_matrix[1][1] 0.00718 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ONL A 1 601 401 ONL ONL . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 9 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 12 HOH HOH . C 3 HOH A 13 713 13 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 16 HOH HOH . C 3 HOH A 17 717 17 HOH HOH . C 3 HOH A 18 718 18 HOH HOH . C 3 HOH A 19 719 19 HOH HOH . C 3 HOH A 20 720 20 HOH HOH . C 3 HOH A 21 721 21 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 23 HOH HOH . C 3 HOH A 24 724 24 HOH HOH . C 3 HOH A 25 725 25 HOH HOH . C 3 HOH A 26 726 26 HOH HOH . C 3 HOH A 27 727 27 HOH HOH . C 3 HOH A 28 728 28 HOH HOH . C 3 HOH A 29 729 29 HOH HOH . C 3 HOH A 30 730 30 HOH HOH . C 3 HOH A 31 731 31 HOH HOH . C 3 HOH A 32 732 32 HOH HOH . C 3 HOH A 33 733 33 HOH HOH . C 3 HOH A 34 734 34 HOH HOH . C 3 HOH A 35 735 35 HOH HOH . C 3 HOH A 36 736 36 HOH HOH . C 3 HOH A 37 737 37 HOH HOH . C 3 HOH A 38 738 38 HOH HOH . C 3 HOH A 39 739 39 HOH HOH . C 3 HOH A 40 740 40 HOH HOH . C 3 HOH A 41 741 41 HOH HOH . C 3 HOH A 42 742 42 HOH HOH . C 3 HOH A 43 743 43 HOH HOH . C 3 HOH A 44 744 44 HOH HOH . C 3 HOH A 45 745 45 HOH HOH . C 3 HOH A 46 746 46 HOH HOH . C 3 HOH A 47 747 47 HOH HOH . C 3 HOH A 48 748 48 HOH HOH . C 3 HOH A 49 749 49 HOH HOH . C 3 HOH A 50 750 50 HOH HOH . C 3 HOH A 51 751 51 HOH HOH . C 3 HOH A 52 752 52 HOH HOH . C 3 HOH A 53 753 53 HOH HOH . C 3 HOH A 54 754 54 HOH HOH . C 3 HOH A 55 755 55 HOH HOH . C 3 HOH A 56 756 56 HOH HOH . C 3 HOH A 57 757 57 HOH HOH . C 3 HOH A 58 758 58 HOH HOH . C 3 HOH A 59 759 59 HOH HOH . C 3 HOH A 60 760 60 HOH HOH . C 3 HOH A 61 761 61 HOH HOH . C 3 HOH A 62 762 62 HOH HOH . C 3 HOH A 63 763 63 HOH HOH . C 3 HOH A 64 764 64 HOH HOH . C 3 HOH A 65 765 65 HOH HOH . C 3 HOH A 66 766 66 HOH HOH . C 3 HOH A 67 767 67 HOH HOH . C 3 HOH A 68 768 68 HOH HOH . C 3 HOH A 69 769 69 HOH HOH . C 3 HOH A 70 770 70 HOH HOH . C 3 HOH A 71 771 71 HOH HOH . C 3 HOH A 72 772 72 HOH HOH . C 3 HOH A 73 773 73 HOH HOH . C 3 HOH A 74 774 74 HOH HOH . C 3 HOH A 75 775 75 HOH HOH . C 3 HOH A 76 776 76 HOH HOH . C 3 HOH A 77 777 77 HOH HOH . C 3 HOH A 78 778 78 HOH HOH . C 3 HOH A 79 779 79 HOH HOH . C 3 HOH A 80 780 80 HOH HOH . C 3 HOH A 81 781 81 HOH HOH . C 3 HOH A 82 782 82 HOH HOH . C 3 HOH A 83 783 83 HOH HOH . C 3 HOH A 84 784 84 HOH HOH . C 3 HOH A 85 785 85 HOH HOH . C 3 HOH A 86 786 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ONL . . . B 2 20.938 -8.542 64.52 1 49.5 ? N ONL 601 A 1 HETATM 2 C CA ONL . . . B 2 20.068 -7.401 64.869 1 60.57 ? CA ONL 601 A 1 HETATM 3 C C ONL . . . B 2 18.954 -7.919 65.833 1 64.75 ? C ONL 601 A 1 HETATM 4 O O ONL . . . B 2 18.471 -7.145 66.71 1 52.22 ? O ONL 601 A 1 HETATM 5 O OXT ONL . . . B 2 18.625 -9.12 65.671 1 47.95 ? OXT ONL 601 A 1 HETATM 6 C CB ONL . . . B 2 19.496 -6.746 63.595 1 39.33 ? CB ONL 601 A 1 HETATM 7 C CG ONL . . . B 2 18.655 -5.468 63.77 1 52.76 ? CG ONL 601 A 1 HETATM 8 C CD ONL . . . B 2 18.186 -5.152 62.359 1 46.41 ? CD ONL 601 A 1 HETATM 9 O OD ONL . . . B 2 18.974 -5.017 61.433 1 45.56 ? OD ONL 601 A 1 HETATM 10 C CE ONL . . . B 2 16.69 -5.396 62.085 1 73.62 ? CE ONL 601 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #