data_4O7F # _model_server_result.job_id h9AAdnp4BfBypbZQdRG-kQ _model_server_result.datetime_utc '2024-11-16 17:38:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 4O7F # _exptl.entry_id 4O7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O7F _cell.length_a 41.869 _cell.length_b 59.464 _cell.length_c 109.606 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,L 1 1 B,F,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 144 n n C1 C2 EDO sing 145 n n C1 H11 EDO sing 146 n n C1 H12 EDO sing 147 n n O1 HO1 EDO sing 148 n n C2 O2 EDO sing 149 n n C2 H21 EDO sing 150 n n C2 H22 EDO sing 151 n n O2 HO2 EDO sing 152 n n # _atom_sites.entry_id 4O7F _atom_sites.fract_transf_matrix[1][1] 0.023884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2RQ A 1 201 1 2RQ LIG . D 3 EDO A 1 202 1 EDO EDO . E 4 CL A 1 203 1 CL CL . F 2 2RQ B 1 201 2 2RQ LIG . G 3 EDO B 1 202 2 EDO EDO . H 3 EDO B 1 203 3 EDO EDO . I 3 EDO B 1 204 4 EDO EDO . J 3 EDO B 1 205 5 EDO EDO . K 3 EDO B 1 206 6 EDO EDO . L 5 HOH A 1 301 1 HOH HOH . L 5 HOH A 2 302 2 HOH HOH . L 5 HOH A 3 303 9 HOH HOH . L 5 HOH A 4 304 11 HOH HOH . L 5 HOH A 5 305 13 HOH HOH . L 5 HOH A 6 306 14 HOH HOH . L 5 HOH A 7 307 16 HOH HOH . L 5 HOH A 8 308 18 HOH HOH . L 5 HOH A 9 309 20 HOH HOH . L 5 HOH A 10 310 21 HOH HOH . L 5 HOH A 11 311 24 HOH HOH . L 5 HOH A 12 312 25 HOH HOH . L 5 HOH A 13 313 27 HOH HOH . L 5 HOH A 14 314 32 HOH HOH . L 5 HOH A 15 315 33 HOH HOH . L 5 HOH A 16 316 50 HOH HOH . L 5 HOH A 17 317 51 HOH HOH . L 5 HOH A 18 318 52 HOH HOH . L 5 HOH A 19 319 53 HOH HOH . L 5 HOH A 20 320 55 HOH HOH . L 5 HOH A 21 321 56 HOH HOH . L 5 HOH A 22 322 58 HOH HOH . L 5 HOH A 23 323 59 HOH HOH . L 5 HOH A 24 324 60 HOH HOH . L 5 HOH A 25 325 61 HOH HOH . L 5 HOH A 26 326 62 HOH HOH . L 5 HOH A 27 327 65 HOH HOH . L 5 HOH A 28 328 67 HOH HOH . L 5 HOH A 29 329 71 HOH HOH . L 5 HOH A 30 330 76 HOH HOH . L 5 HOH A 31 331 79 HOH HOH . L 5 HOH A 32 332 80 HOH HOH . L 5 HOH A 33 333 82 HOH HOH . L 5 HOH A 34 334 83 HOH HOH . L 5 HOH A 35 335 84 HOH HOH . L 5 HOH A 36 336 90 HOH HOH . L 5 HOH A 37 337 91 HOH HOH . L 5 HOH A 38 338 92 HOH HOH . L 5 HOH A 39 339 94 HOH HOH . L 5 HOH A 40 340 96 HOH HOH . L 5 HOH A 41 341 98 HOH HOH . L 5 HOH A 42 342 101 HOH HOH . L 5 HOH A 43 343 102 HOH HOH . L 5 HOH A 44 344 103 HOH HOH . L 5 HOH A 45 345 104 HOH HOH . L 5 HOH A 46 346 106 HOH HOH . L 5 HOH A 47 347 107 HOH HOH . L 5 HOH A 48 348 111 HOH HOH . L 5 HOH A 49 349 113 HOH HOH . L 5 HOH A 50 350 114 HOH HOH . L 5 HOH A 51 351 115 HOH HOH . L 5 HOH A 52 352 116 HOH HOH . L 5 HOH A 53 353 117 HOH HOH . L 5 HOH A 54 354 118 HOH HOH . L 5 HOH A 55 355 119 HOH HOH . L 5 HOH A 56 356 120 HOH HOH . L 5 HOH A 57 357 122 HOH HOH . L 5 HOH A 58 358 123 HOH HOH . L 5 HOH A 59 359 124 HOH HOH . L 5 HOH A 60 360 125 HOH HOH . L 5 HOH A 61 361 127 HOH HOH . L 5 HOH A 62 362 132 HOH HOH . L 5 HOH A 63 363 134 HOH HOH . L 5 HOH A 64 364 135 HOH HOH . L 5 HOH A 65 365 137 HOH HOH . L 5 HOH A 66 366 141 HOH HOH . L 5 HOH A 67 367 142 HOH HOH . L 5 HOH A 68 368 145 HOH HOH . L 5 HOH A 69 369 149 HOH HOH . L 5 HOH A 70 370 153 HOH HOH . L 5 HOH A 71 371 154 HOH HOH . L 5 HOH A 72 372 158 HOH HOH . L 5 HOH A 73 373 160 HOH HOH . L 5 HOH A 74 374 163 HOH HOH . L 5 HOH A 75 375 169 HOH HOH . L 5 HOH A 76 376 170 HOH HOH . L 5 HOH A 77 377 171 HOH HOH . L 5 HOH A 78 378 173 HOH HOH . L 5 HOH A 79 379 178 HOH HOH . L 5 HOH A 80 380 181 HOH HOH . L 5 HOH A 81 381 184 HOH HOH . L 5 HOH A 82 382 189 HOH HOH . L 5 HOH A 83 383 191 HOH HOH . L 5 HOH A 84 384 194 HOH HOH . L 5 HOH A 85 385 195 HOH HOH . L 5 HOH A 86 386 198 HOH HOH . L 5 HOH A 87 387 200 HOH HOH . L 5 HOH A 88 388 202 HOH HOH . L 5 HOH A 89 389 203 HOH HOH . L 5 HOH A 90 390 207 HOH HOH . L 5 HOH A 91 391 208 HOH HOH . L 5 HOH A 92 392 209 HOH HOH . L 5 HOH A 93 393 210 HOH HOH . L 5 HOH A 94 394 211 HOH HOH . L 5 HOH A 95 395 215 HOH HOH . L 5 HOH A 96 396 216 HOH HOH . L 5 HOH A 97 397 219 HOH HOH . L 5 HOH A 98 398 221 HOH HOH . L 5 HOH A 99 399 222 HOH HOH . L 5 HOH A 100 400 223 HOH HOH . L 5 HOH A 101 401 224 HOH HOH . L 5 HOH A 102 402 226 HOH HOH . L 5 HOH A 103 403 228 HOH HOH . L 5 HOH A 104 404 229 HOH HOH . L 5 HOH A 105 405 232 HOH HOH . L 5 HOH A 106 406 235 HOH HOH . L 5 HOH A 107 407 236 HOH HOH . L 5 HOH A 108 408 240 HOH HOH . L 5 HOH A 109 409 242 HOH HOH . L 5 HOH A 110 410 244 HOH HOH . L 5 HOH A 111 411 247 HOH HOH . L 5 HOH A 112 412 249 HOH HOH . M 5 HOH B 1 301 3 HOH HOH . M 5 HOH B 2 302 4 HOH HOH . M 5 HOH B 3 303 5 HOH HOH . M 5 HOH B 4 304 6 HOH HOH . M 5 HOH B 5 305 7 HOH HOH . M 5 HOH B 6 306 8 HOH HOH . M 5 HOH B 7 307 10 HOH HOH . M 5 HOH B 8 308 12 HOH HOH . M 5 HOH B 9 309 15 HOH HOH . M 5 HOH B 10 310 17 HOH HOH . M 5 HOH B 11 311 19 HOH HOH . M 5 HOH B 12 312 22 HOH HOH . M 5 HOH B 13 313 23 HOH HOH . M 5 HOH B 14 314 26 HOH HOH . M 5 HOH B 15 315 28 HOH HOH . M 5 HOH B 16 316 29 HOH HOH . M 5 HOH B 17 317 30 HOH HOH . M 5 HOH B 18 318 31 HOH HOH . M 5 HOH B 19 319 34 HOH HOH . M 5 HOH B 20 320 35 HOH HOH . M 5 HOH B 21 321 36 HOH HOH . M 5 HOH B 22 322 37 HOH HOH . M 5 HOH B 23 323 38 HOH HOH . M 5 HOH B 24 324 39 HOH HOH . M 5 HOH B 25 325 40 HOH HOH . M 5 HOH B 26 326 41 HOH HOH . M 5 HOH B 27 327 42 HOH HOH . M 5 HOH B 28 328 43 HOH HOH . M 5 HOH B 29 329 44 HOH HOH . M 5 HOH B 30 330 45 HOH HOH . M 5 HOH B 31 331 46 HOH HOH . M 5 HOH B 32 332 47 HOH HOH . M 5 HOH B 33 333 48 HOH HOH . M 5 HOH B 34 334 49 HOH HOH . M 5 HOH B 35 335 54 HOH HOH . M 5 HOH B 36 336 57 HOH HOH . M 5 HOH B 37 337 63 HOH HOH . M 5 HOH B 38 338 64 HOH HOH . M 5 HOH B 39 339 66 HOH HOH . M 5 HOH B 40 340 68 HOH HOH . M 5 HOH B 41 341 69 HOH HOH . M 5 HOH B 42 342 70 HOH HOH . M 5 HOH B 43 343 72 HOH HOH . M 5 HOH B 44 344 73 HOH HOH . M 5 HOH B 45 345 74 HOH HOH . M 5 HOH B 46 346 75 HOH HOH . M 5 HOH B 47 347 77 HOH HOH . M 5 HOH B 48 348 78 HOH HOH . M 5 HOH B 49 349 81 HOH HOH . M 5 HOH B 50 350 85 HOH HOH . M 5 HOH B 51 351 86 HOH HOH . M 5 HOH B 52 352 87 HOH HOH . M 5 HOH B 53 353 88 HOH HOH . M 5 HOH B 54 354 89 HOH HOH . M 5 HOH B 55 355 93 HOH HOH . M 5 HOH B 56 356 95 HOH HOH . M 5 HOH B 57 357 97 HOH HOH . M 5 HOH B 58 358 99 HOH HOH . M 5 HOH B 59 359 100 HOH HOH . M 5 HOH B 60 360 105 HOH HOH . M 5 HOH B 61 361 108 HOH HOH . M 5 HOH B 62 362 109 HOH HOH . M 5 HOH B 63 363 110 HOH HOH . M 5 HOH B 64 364 112 HOH HOH . M 5 HOH B 65 365 121 HOH HOH . M 5 HOH B 66 366 126 HOH HOH . M 5 HOH B 67 367 128 HOH HOH . M 5 HOH B 68 368 129 HOH HOH . M 5 HOH B 69 369 130 HOH HOH . M 5 HOH B 70 370 131 HOH HOH . M 5 HOH B 71 371 133 HOH HOH . M 5 HOH B 72 372 136 HOH HOH . M 5 HOH B 73 373 138 HOH HOH . M 5 HOH B 74 374 139 HOH HOH . M 5 HOH B 75 375 140 HOH HOH . M 5 HOH B 76 376 143 HOH HOH . M 5 HOH B 77 377 144 HOH HOH . M 5 HOH B 78 378 146 HOH HOH . M 5 HOH B 79 379 147 HOH HOH . M 5 HOH B 80 380 148 HOH HOH . M 5 HOH B 81 381 150 HOH HOH . M 5 HOH B 82 382 151 HOH HOH . M 5 HOH B 83 383 152 HOH HOH . M 5 HOH B 84 384 155 HOH HOH . M 5 HOH B 85 385 156 HOH HOH . M 5 HOH B 86 386 157 HOH HOH . M 5 HOH B 87 387 159 HOH HOH . M 5 HOH B 88 388 161 HOH HOH . M 5 HOH B 89 389 162 HOH HOH . M 5 HOH B 90 390 164 HOH HOH . M 5 HOH B 91 391 165 HOH HOH . M 5 HOH B 92 392 166 HOH HOH . M 5 HOH B 93 393 167 HOH HOH . M 5 HOH B 94 394 168 HOH HOH . M 5 HOH B 95 395 172 HOH HOH . M 5 HOH B 96 396 174 HOH HOH . M 5 HOH B 97 397 175 HOH HOH . M 5 HOH B 98 398 176 HOH HOH . M 5 HOH B 99 399 177 HOH HOH . M 5 HOH B 100 400 179 HOH HOH . M 5 HOH B 101 401 180 HOH HOH . M 5 HOH B 102 402 182 HOH HOH . M 5 HOH B 103 403 183 HOH HOH . M 5 HOH B 104 404 185 HOH HOH . M 5 HOH B 105 405 186 HOH HOH . M 5 HOH B 106 406 187 HOH HOH . M 5 HOH B 107 407 188 HOH HOH . M 5 HOH B 108 408 190 HOH HOH . M 5 HOH B 109 409 192 HOH HOH . M 5 HOH B 110 410 193 HOH HOH . M 5 HOH B 111 411 196 HOH HOH . M 5 HOH B 112 412 197 HOH HOH . M 5 HOH B 113 413 199 HOH HOH . M 5 HOH B 114 414 201 HOH HOH . M 5 HOH B 115 415 204 HOH HOH . M 5 HOH B 116 416 205 HOH HOH . M 5 HOH B 117 417 206 HOH HOH . M 5 HOH B 118 418 212 HOH HOH . M 5 HOH B 119 419 214 HOH HOH . M 5 HOH B 120 420 217 HOH HOH . M 5 HOH B 121 421 218 HOH HOH . M 5 HOH B 122 422 220 HOH HOH . M 5 HOH B 123 423 225 HOH HOH . M 5 HOH B 124 424 231 HOH HOH . M 5 HOH B 125 425 234 HOH HOH . M 5 HOH B 126 426 237 HOH HOH . M 5 HOH B 127 427 238 HOH HOH . M 5 HOH B 128 428 239 HOH HOH . M 5 HOH B 129 429 241 HOH HOH . M 5 HOH B 130 430 243 HOH HOH . M 5 HOH B 131 431 245 HOH HOH . M 5 HOH B 132 432 246 HOH HOH . M 5 HOH B 133 433 248 HOH HOH . M 5 HOH B 134 434 250 HOH HOH . M 5 HOH B 135 435 251 HOH HOH . M 5 HOH B 136 436 252 HOH HOH . M 5 HOH B 137 437 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 69.073 49.529 25.514 1 30.02 ? C1 EDO 203 B 1 HETATM 2 O O1 EDO . . . H 3 68.334 49.632 24.297 1 27.5 ? O1 EDO 203 B 1 HETATM 3 C C2 EDO . . . H 3 69.954 48.292 25.499 1 31.24 ? C2 EDO 203 B 1 HETATM 4 O O2 EDO . . . H 3 71.029 48.517 24.579 1 33.2 ? O2 EDO 203 B 1 HETATM 5 H H11 EDO . . . H 3 69.693 50.419 25.641 1 36.02 ? H11 EDO 203 B 1 HETATM 6 H H12 EDO . . . H 3 68.382 49.476 26.358 1 36.02 ? H12 EDO 203 B 1 HETATM 7 H HO1 EDO . . . H 3 67.779 50.423 24.323 1 33 ? HO1 EDO 203 B 1 HETATM 8 H H21 EDO . . . H 3 69.372 47.422 25.189 1 37.48 ? H21 EDO 203 B 1 HETATM 9 H H22 EDO . . . H 3 70.351 48.104 26.499 1 37.48 ? H22 EDO 203 B 1 HETATM 10 H HO2 EDO . . . H 3 71.602 47.738 24.556 1 39.84 ? HO2 EDO 203 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #