data_4O7G # _model_server_result.job_id JXPyf8TQp_sStsPTvFnZig _model_server_result.datetime_utc '2024-11-04 22:58:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":304}' # _entry.id 4O7G # _exptl.entry_id 4O7G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASCORBIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O7G _cell.length_a 73.186 _cell.length_b 108.705 _cell.length_c 111.762 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7G _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A NE2 HIS 84 A HIS 84 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A NE2 HIS 118 A HIS 118 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 A NE2 HIS 157 A HIS 157 1_555 D FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 B NE2 HIS 51 B HIS 51 1_555 G FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 B NE2 HIS 84 B HIS 84 1_555 H FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc7 B NE2 HIS 118 B HIS 118 1_555 G FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc8 B NE2 HIS 157 B HIS 157 1_555 H FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C6 H8 O6' _chem_comp.formula_weight 176.124 _chem_comp.id ASC _chem_comp.mon_nstd_flag . _chem_comp.name 'ASCORBIC ACID' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms 'Vitamin C' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ASC sing 39 n n C1 O1 ASC doub 40 n n C1 O4 ASC sing 41 n n C2 C3 ASC doub 42 n n C2 O2 ASC sing 43 n n C3 C4 ASC sing 44 n n C3 O3 ASC sing 45 n n C4 C5 ASC sing 46 n n C4 O4 ASC sing 47 n n C4 H4 ASC sing 48 n n C5 C6 ASC sing 49 n n C5 O5 ASC sing 50 n n C5 H5 ASC sing 51 n n C6 O6 ASC sing 52 n n C6 H61 ASC sing 53 n n C6 H62 ASC sing 54 n n O2 HO2 ASC sing 55 n n O3 HO3 ASC sing 56 n n O5 HO5 ASC sing 57 n n O6 HO6 ASC sing 58 n n # _atom_sites.entry_id 4O7G _atom_sites.fract_transf_matrix[1][1] 0.013664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 301 1 HEM HEM . D 2 HEM A 1 302 2 HEM HEM . E 3 ASC A 1 303 3 ASC ASC . F 4 SO4 A 1 304 1 SO4 SO4 . G 2 HEM B 1 301 3 HEM HEM . H 2 HEM B 1 302 4 HEM HEM . I 3 ASC B 1 303 1 ASC ASC . J 3 ASC B 1 304 2 ASC ASC . K 5 HOH A 1 401 1 HOH HOH . K 5 HOH A 2 402 7 HOH HOH . K 5 HOH A 3 403 9 HOH HOH . K 5 HOH A 4 404 11 HOH HOH . K 5 HOH A 5 405 13 HOH HOH . K 5 HOH A 6 406 16 HOH HOH . K 5 HOH A 7 407 17 HOH HOH . K 5 HOH A 8 408 18 HOH HOH . K 5 HOH A 9 409 20 HOH HOH . K 5 HOH A 10 410 21 HOH HOH . K 5 HOH A 11 411 22 HOH HOH . K 5 HOH A 12 412 23 HOH HOH . K 5 HOH A 13 413 24 HOH HOH . K 5 HOH A 14 414 27 HOH HOH . K 5 HOH A 15 415 29 HOH HOH . K 5 HOH A 16 416 30 HOH HOH . K 5 HOH A 17 417 32 HOH HOH . K 5 HOH A 18 418 33 HOH HOH . K 5 HOH A 19 419 34 HOH HOH . K 5 HOH A 20 420 35 HOH HOH . K 5 HOH A 21 421 37 HOH HOH . K 5 HOH A 22 422 38 HOH HOH . K 5 HOH A 23 423 41 HOH HOH . K 5 HOH A 24 424 47 HOH HOH . K 5 HOH A 25 425 48 HOH HOH . L 5 HOH B 1 401 2 HOH HOH . L 5 HOH B 2 402 3 HOH HOH . L 5 HOH B 3 403 4 HOH HOH . L 5 HOH B 4 404 5 HOH HOH . L 5 HOH B 5 405 6 HOH HOH . L 5 HOH B 6 406 8 HOH HOH . L 5 HOH B 7 407 10 HOH HOH . L 5 HOH B 8 408 12 HOH HOH . L 5 HOH B 9 409 14 HOH HOH . L 5 HOH B 10 410 15 HOH HOH . L 5 HOH B 11 411 19 HOH HOH . L 5 HOH B 12 412 25 HOH HOH . L 5 HOH B 13 413 26 HOH HOH . L 5 HOH B 14 414 28 HOH HOH . L 5 HOH B 15 415 31 HOH HOH . L 5 HOH B 16 416 36 HOH HOH . L 5 HOH B 17 417 39 HOH HOH . L 5 HOH B 18 418 40 HOH HOH . L 5 HOH B 19 419 42 HOH HOH . L 5 HOH B 20 420 43 HOH HOH . L 5 HOH B 21 421 45 HOH HOH . L 5 HOH B 22 422 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASC . . . J 3 -17.273 4.371 18.62 1 90.47 ? C1 ASC 304 B 1 HETATM 2 C C2 ASC . . . J 3 -16.424 4.555 17.465 1 85.55 ? C2 ASC 304 B 1 HETATM 3 C C3 ASC . . . J 3 -15.643 3.495 17.375 1 99.1 ? C3 ASC 304 B 1 HETATM 4 C C4 ASC . . . J 3 -15.924 2.509 18.476 1 103.31 ? C4 ASC 304 B 1 HETATM 5 C C5 ASC . . . J 3 -14.671 2.288 19.311 1 104.78 ? C5 ASC 304 B 1 HETATM 6 C C6 ASC . . . J 3 -14.81 2.927 20.687 1 99.68 ? C6 ASC 304 B 1 HETATM 7 O O1 ASC . . . J 3 -18.133 5.148 19.002 1 85.23 ? O1 ASC 304 B 1 HETATM 8 O O2 ASC . . . J 3 -16.428 5.601 16.645 1 67.12 ? O2 ASC 304 B 1 HETATM 9 O O3 ASC . . . J 3 -14.723 3.32 16.43 1 106.7 ? O3 ASC 304 B 1 HETATM 10 O O4 ASC . . . J 3 -16.961 3.11 19.274 1 97.61 ? O4 ASC 304 B 1 HETATM 11 O O5 ASC . . . J 3 -13.544 2.854 18.633 1 108.72 ? O5 ASC 304 B 1 HETATM 12 O O6 ASC . . . J 3 -16.035 2.495 21.288 1 96.59 ? O6 ASC 304 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #