data_4O7J # _model_server_result.job_id uSLsqeq3yOAI03Zx2Tii8g _model_server_result.datetime_utc '2024-10-20 07:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4O7J # _exptl.entry_id 4O7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.69 _cell.angle_gamma 90 _cell.entry_id 4O7J _cell.length_a 45.47 _cell.length_b 66.81 _cell.length_c 50.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 14 B ASP 14 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A OD1 ASN 16 B ASN 16 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A OD1 ASP 18 B ASP 18 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc4 A O LEU 20 B LEU 20 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A OD2 ASP 22 B ASP 22 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 A OD1 ASP 22 B ASP 22 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc7 C NA NA . B NA 201 1_555 E O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 B OD1 ASP 14 A ASP 14 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc9 B OD1 ASN 16 A ASN 16 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc10 B OD1 ASP 18 A ASP 18 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc11 B O LEU 20 A LEU 20 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc12 B OD2 ASP 22 A ASP 22 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc13 B OD1 ASP 22 A ASP 22 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc14 D NA NA . A NA 201 1_555 F O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O7J _atom_sites.fract_transf_matrix[1][1] 0.021993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002191 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 201 1 NA NA . D 2 NA A 1 201 1 NA NA . E 3 HOH B 1 301 2 HOH HOH . E 3 HOH B 2 302 3 HOH HOH . E 3 HOH B 3 303 4 HOH HOH . E 3 HOH B 4 304 10 HOH HOH . E 3 HOH B 5 305 14 HOH HOH . E 3 HOH B 6 306 15 HOH HOH . E 3 HOH B 7 307 16 HOH HOH . E 3 HOH B 8 308 17 HOH HOH . E 3 HOH B 9 309 19 HOH HOH . E 3 HOH B 10 310 21 HOH HOH . E 3 HOH B 11 311 23 HOH HOH . E 3 HOH B 12 312 24 HOH HOH . E 3 HOH B 13 313 25 HOH HOH . E 3 HOH B 14 314 27 HOH HOH . E 3 HOH B 15 315 28 HOH HOH . E 3 HOH B 16 316 29 HOH HOH . E 3 HOH B 17 317 33 HOH HOH . E 3 HOH B 18 318 34 HOH HOH . E 3 HOH B 19 319 35 HOH HOH . E 3 HOH B 20 320 36 HOH HOH . E 3 HOH B 21 321 37 HOH HOH . E 3 HOH B 22 322 38 HOH HOH . E 3 HOH B 23 323 39 HOH HOH . E 3 HOH B 24 324 41 HOH HOH . E 3 HOH B 25 325 42 HOH HOH . E 3 HOH B 26 326 43 HOH HOH . E 3 HOH B 27 327 45 HOH HOH . E 3 HOH B 28 328 51 HOH HOH . E 3 HOH B 29 329 52 HOH HOH . E 3 HOH B 30 330 55 HOH HOH . E 3 HOH B 31 331 57 HOH HOH . E 3 HOH B 32 332 60 HOH HOH . E 3 HOH B 33 333 61 HOH HOH . E 3 HOH B 34 334 64 HOH HOH . E 3 HOH B 35 335 68 HOH HOH . E 3 HOH B 36 336 71 HOH HOH . E 3 HOH B 37 337 73 HOH HOH . E 3 HOH B 38 338 82 HOH HOH . E 3 HOH B 39 339 84 HOH HOH . E 3 HOH B 40 340 87 HOH HOH . E 3 HOH B 41 341 90 HOH HOH . E 3 HOH B 42 342 92 HOH HOH . E 3 HOH B 43 343 93 HOH HOH . E 3 HOH B 44 344 94 HOH HOH . E 3 HOH B 45 345 95 HOH HOH . E 3 HOH B 46 346 96 HOH HOH . E 3 HOH B 47 347 100 HOH HOH . E 3 HOH B 48 348 102 HOH HOH . E 3 HOH B 49 349 103 HOH HOH . E 3 HOH B 50 350 105 HOH HOH . E 3 HOH B 51 351 107 HOH HOH . E 3 HOH B 52 352 109 HOH HOH . E 3 HOH B 53 353 110 HOH HOH . E 3 HOH B 54 354 111 HOH HOH . E 3 HOH B 55 355 114 HOH HOH . E 3 HOH B 56 356 115 HOH HOH . E 3 HOH B 57 357 119 HOH HOH . E 3 HOH B 58 358 121 HOH HOH . E 3 HOH B 59 359 122 HOH HOH . E 3 HOH B 60 360 123 HOH HOH . E 3 HOH B 61 361 128 HOH HOH . E 3 HOH B 62 362 129 HOH HOH . E 3 HOH B 63 363 130 HOH HOH . E 3 HOH B 64 364 131 HOH HOH . E 3 HOH B 65 365 133 HOH HOH . E 3 HOH B 66 366 134 HOH HOH . E 3 HOH B 67 367 135 HOH HOH . E 3 HOH B 68 368 141 HOH HOH . E 3 HOH B 69 369 142 HOH HOH . E 3 HOH B 70 370 143 HOH HOH . E 3 HOH B 71 371 144 HOH HOH . E 3 HOH B 72 372 145 HOH HOH . E 3 HOH B 73 373 146 HOH HOH . E 3 HOH B 74 374 147 HOH HOH . E 3 HOH B 75 375 148 HOH HOH . E 3 HOH B 76 376 149 HOH HOH . E 3 HOH B 77 377 162 HOH HOH . E 3 HOH B 78 378 163 HOH HOH . E 3 HOH B 79 379 164 HOH HOH . E 3 HOH B 80 380 165 HOH HOH . E 3 HOH B 81 381 166 HOH HOH . E 3 HOH B 82 382 167 HOH HOH . E 3 HOH B 83 383 169 HOH HOH . E 3 HOH B 84 384 173 HOH HOH . E 3 HOH B 85 385 174 HOH HOH . E 3 HOH B 86 386 175 HOH HOH . E 3 HOH B 87 387 176 HOH HOH . E 3 HOH B 88 388 177 HOH HOH . E 3 HOH B 89 389 178 HOH HOH . E 3 HOH B 90 390 183 HOH HOH . E 3 HOH B 91 391 190 HOH HOH . E 3 HOH B 92 392 191 HOH HOH . E 3 HOH B 93 393 192 HOH HOH . E 3 HOH B 94 394 193 HOH HOH . E 3 HOH B 95 395 194 HOH HOH . E 3 HOH B 96 396 195 HOH HOH . E 3 HOH B 97 397 196 HOH HOH . E 3 HOH B 98 398 197 HOH HOH . E 3 HOH B 99 399 198 HOH HOH . E 3 HOH B 100 400 199 HOH HOH . E 3 HOH B 101 401 200 HOH HOH . E 3 HOH B 102 402 216 HOH HOH . E 3 HOH B 103 403 217 HOH HOH . E 3 HOH B 104 404 218 HOH HOH . E 3 HOH B 105 405 219 HOH HOH . E 3 HOH B 106 406 220 HOH HOH . E 3 HOH B 107 407 221 HOH HOH . E 3 HOH B 108 408 227 HOH HOH . E 3 HOH B 109 409 228 HOH HOH . E 3 HOH B 110 410 229 HOH HOH . E 3 HOH B 111 411 230 HOH HOH . E 3 HOH B 112 412 231 HOH HOH . E 3 HOH B 113 413 232 HOH HOH . E 3 HOH B 114 414 233 HOH HOH . E 3 HOH B 115 415 234 HOH HOH . E 3 HOH B 116 416 184 HOH HOH . F 3 HOH A 1 301 1 HOH HOH . F 3 HOH A 2 302 5 HOH HOH . F 3 HOH A 3 303 6 HOH HOH . F 3 HOH A 4 304 7 HOH HOH . F 3 HOH A 5 305 8 HOH HOH . F 3 HOH A 6 306 9 HOH HOH . F 3 HOH A 7 307 11 HOH HOH . F 3 HOH A 8 308 13 HOH HOH . F 3 HOH A 9 309 18 HOH HOH . F 3 HOH A 10 310 20 HOH HOH . F 3 HOH A 11 311 22 HOH HOH . F 3 HOH A 12 312 26 HOH HOH . F 3 HOH A 13 313 30 HOH HOH . F 3 HOH A 14 314 31 HOH HOH . F 3 HOH A 15 315 32 HOH HOH . F 3 HOH A 16 316 40 HOH HOH . F 3 HOH A 17 317 46 HOH HOH . F 3 HOH A 18 318 47 HOH HOH . F 3 HOH A 19 319 48 HOH HOH . F 3 HOH A 20 320 49 HOH HOH . F 3 HOH A 21 321 50 HOH HOH . F 3 HOH A 22 322 54 HOH HOH . F 3 HOH A 23 323 56 HOH HOH . F 3 HOH A 24 324 59 HOH HOH . F 3 HOH A 25 325 62 HOH HOH . F 3 HOH A 26 326 63 HOH HOH . F 3 HOH A 27 327 65 HOH HOH . F 3 HOH A 28 328 66 HOH HOH . F 3 HOH A 29 329 67 HOH HOH . F 3 HOH A 30 330 69 HOH HOH . F 3 HOH A 31 331 72 HOH HOH . F 3 HOH A 32 332 74 HOH HOH . F 3 HOH A 33 333 75 HOH HOH . F 3 HOH A 34 334 76 HOH HOH . F 3 HOH A 35 335 77 HOH HOH . F 3 HOH A 36 336 78 HOH HOH . F 3 HOH A 37 337 79 HOH HOH . F 3 HOH A 38 338 81 HOH HOH . F 3 HOH A 39 339 85 HOH HOH . F 3 HOH A 40 340 86 HOH HOH . F 3 HOH A 41 341 88 HOH HOH . F 3 HOH A 42 342 89 HOH HOH . F 3 HOH A 43 343 98 HOH HOH . F 3 HOH A 44 344 99 HOH HOH . F 3 HOH A 45 345 104 HOH HOH . F 3 HOH A 46 346 106 HOH HOH . F 3 HOH A 47 347 108 HOH HOH . F 3 HOH A 48 348 112 HOH HOH . F 3 HOH A 49 349 113 HOH HOH . F 3 HOH A 50 350 117 HOH HOH . F 3 HOH A 51 351 118 HOH HOH . F 3 HOH A 52 352 120 HOH HOH . F 3 HOH A 53 353 124 HOH HOH . F 3 HOH A 54 354 132 HOH HOH . F 3 HOH A 55 355 136 HOH HOH . F 3 HOH A 56 356 137 HOH HOH . F 3 HOH A 57 357 138 HOH HOH . F 3 HOH A 58 358 150 HOH HOH . F 3 HOH A 59 359 151 HOH HOH . F 3 HOH A 60 360 152 HOH HOH . F 3 HOH A 61 361 153 HOH HOH . F 3 HOH A 62 362 154 HOH HOH . F 3 HOH A 63 363 155 HOH HOH . F 3 HOH A 64 364 156 HOH HOH . F 3 HOH A 65 365 158 HOH HOH . F 3 HOH A 66 366 159 HOH HOH . F 3 HOH A 67 367 160 HOH HOH . F 3 HOH A 68 368 170 HOH HOH . F 3 HOH A 69 369 171 HOH HOH . F 3 HOH A 70 370 172 HOH HOH . F 3 HOH A 71 371 179 HOH HOH . F 3 HOH A 72 372 180 HOH HOH . F 3 HOH A 73 373 181 HOH HOH . F 3 HOH A 74 374 182 HOH HOH . F 3 HOH A 75 375 185 HOH HOH . F 3 HOH A 76 376 186 HOH HOH . F 3 HOH A 77 377 187 HOH HOH . F 3 HOH A 78 378 188 HOH HOH . F 3 HOH A 79 379 189 HOH HOH . F 3 HOH A 80 380 201 HOH HOH . F 3 HOH A 81 381 202 HOH HOH . F 3 HOH A 82 382 203 HOH HOH . F 3 HOH A 83 383 204 HOH HOH . F 3 HOH A 84 384 205 HOH HOH . F 3 HOH A 85 385 206 HOH HOH . F 3 HOH A 86 386 207 HOH HOH . F 3 HOH A 87 387 208 HOH HOH . F 3 HOH A 88 388 209 HOH HOH . F 3 HOH A 89 389 210 HOH HOH . F 3 HOH A 90 390 211 HOH HOH . F 3 HOH A 91 391 212 HOH HOH . F 3 HOH A 92 392 213 HOH HOH . F 3 HOH A 93 393 214 HOH HOH . F 3 HOH A 94 394 215 HOH HOH . F 3 HOH A 95 395 222 HOH HOH . F 3 HOH A 96 396 223 HOH HOH . F 3 HOH A 97 397 224 HOH HOH . F 3 HOH A 98 398 225 HOH HOH . F 3 HOH A 99 399 226 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 93.996 _atom_site.Cartn_y -8.647 _atom_site.Cartn_z 66.54 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 5.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #