data_4O7U # _model_server_result.job_id g603FcQd7Fr6fsKDxDajsg _model_server_result.datetime_utc '2024-11-20 15:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4O7U # _exptl.entry_id 4O7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.33 _cell.angle_gamma 90 _cell.entry_id 4O7U _cell.length_a 72.082 _cell.length_b 94.225 _cell.length_c 96.816 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,M,N 1 1 C,D,H,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N7 O7' _chem_comp.formula_weight 473.439 _chem_comp.id THF _chem_comp.mon_nstd_flag . _chem_comp.name '5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 THF sing 353 n y N1 C8A THF sing 354 n y N1 HN1 THF sing 355 n n C2 NA2 THF sing 356 n n C2 N3 THF doub 357 n y NA2 HN21 THF sing 358 n n NA2 HN22 THF sing 359 n n N3 C4 THF sing 360 n y C4 O4 THF doub 361 n n C4 C4A THF sing 362 n y C4A N5 THF sing 363 n n C4A C8A THF doub 364 n y N5 C6 THF sing 365 n n N5 CP1 THF sing 366 n n C6 C7 THF sing 367 n n C6 C9 THF sing 368 n n C6 H6 THF sing 369 n n C7 N8 THF doub 370 n n C7 H7 THF sing 371 n n N8 C8A THF sing 372 n n C9 N10 THF sing 373 n n C9 H91 THF sing 374 n n C9 H92 THF sing 375 n n N10 C14 THF sing 376 n n N10 HN0 THF sing 377 n n C11 C12 THF doub 378 n y C11 C16 THF sing 379 n y C11 C THF sing 380 n n C12 C13 THF sing 381 n y C12 H12 THF sing 382 n n C13 C14 THF doub 383 n y C13 H13 THF sing 384 n n C14 C15 THF sing 385 n y C15 C16 THF doub 386 n y C15 H15 THF sing 387 n n C16 H16 THF sing 388 n n C O THF doub 389 n n C N THF sing 390 n n N CA THF sing 391 n n N HN THF sing 392 n n CA CB THF sing 393 n n CA CT THF sing 394 n n CA HA THF sing 395 n n CB CG THF sing 396 n n CB HB1 THF sing 397 n n CB HB2 THF sing 398 n n CG CD THF sing 399 n n CG HG1 THF sing 400 n n CG HG2 THF sing 401 n n CD OE1 THF doub 402 n n CD OE2 THF sing 403 n n OE2 HOE2 THF sing 404 n n CT O1 THF doub 405 n n CT O2 THF sing 406 n n O2 HO2 THF sing 407 n n CP1 O3 THF sing 408 n n CP1 HCP1 THF sing 409 n n CP1 HCP2 THF sing 410 n n O3 HO3 THF sing 411 n n # _atom_sites.entry_id 4O7U _atom_sites.fract_transf_matrix[1][1] 0.013873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00105 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 401 401 SO4 SO4 . F 2 SO4 A 1 402 402 SO4 SO4 . G 3 THF B 1 401 401 THF THF . H 2 SO4 C 1 401 401 SO4 SO4 . I 4 EDO C 1 402 402 EDO EDO . J 2 SO4 D 1 401 401 SO4 SO4 . K 5 SS7 D 1 402 402 SS7 SS7 . L 4 EDO D 1 403 403 EDO EDO . M 6 HOH A 1 501 501 HOH HOH . M 6 HOH A 2 502 502 HOH HOH . M 6 HOH A 3 503 503 HOH HOH . M 6 HOH A 4 504 504 HOH HOH . M 6 HOH A 5 505 505 HOH HOH . M 6 HOH A 6 506 506 HOH HOH . M 6 HOH A 7 507 507 HOH HOH . M 6 HOH A 8 508 508 HOH HOH . M 6 HOH A 9 509 509 HOH HOH . M 6 HOH A 10 510 510 HOH HOH . M 6 HOH A 11 511 511 HOH HOH . M 6 HOH A 12 512 512 HOH HOH . M 6 HOH A 13 513 513 HOH HOH . M 6 HOH A 14 514 514 HOH HOH . M 6 HOH A 15 515 515 HOH HOH . M 6 HOH A 16 516 516 HOH HOH . M 6 HOH A 17 517 517 HOH HOH . M 6 HOH A 18 518 518 HOH HOH . M 6 HOH A 19 519 519 HOH HOH . M 6 HOH A 20 520 520 HOH HOH . M 6 HOH A 21 521 521 HOH HOH . M 6 HOH A 22 522 522 HOH HOH . M 6 HOH A 23 523 523 HOH HOH . M 6 HOH A 24 524 524 HOH HOH . M 6 HOH A 25 525 525 HOH HOH . M 6 HOH A 26 526 526 HOH HOH . M 6 HOH A 27 527 527 HOH HOH . M 6 HOH A 28 528 528 HOH HOH . M 6 HOH A 29 529 529 HOH HOH . M 6 HOH A 30 530 530 HOH HOH . M 6 HOH A 31 531 531 HOH HOH . M 6 HOH A 32 532 532 HOH HOH . M 6 HOH A 33 533 533 HOH HOH . M 6 HOH A 34 534 534 HOH HOH . M 6 HOH A 35 535 535 HOH HOH . M 6 HOH A 36 536 536 HOH HOH . M 6 HOH A 37 537 537 HOH HOH . M 6 HOH A 38 538 538 HOH HOH . N 6 HOH B 1 501 501 HOH HOH . N 6 HOH B 2 502 502 HOH HOH . N 6 HOH B 3 503 503 HOH HOH . N 6 HOH B 4 504 504 HOH HOH . N 6 HOH B 5 505 505 HOH HOH . N 6 HOH B 6 506 506 HOH HOH . N 6 HOH B 7 507 507 HOH HOH . N 6 HOH B 8 508 508 HOH HOH . N 6 HOH B 9 509 509 HOH HOH . N 6 HOH B 10 510 510 HOH HOH . N 6 HOH B 11 511 511 HOH HOH . N 6 HOH B 12 512 512 HOH HOH . N 6 HOH B 13 513 513 HOH HOH . N 6 HOH B 14 514 514 HOH HOH . N 6 HOH B 15 515 515 HOH HOH . N 6 HOH B 16 516 516 HOH HOH . N 6 HOH B 17 517 517 HOH HOH . N 6 HOH B 18 518 518 HOH HOH . N 6 HOH B 19 519 519 HOH HOH . N 6 HOH B 20 520 520 HOH HOH . N 6 HOH B 21 521 521 HOH HOH . N 6 HOH B 22 522 522 HOH HOH . N 6 HOH B 23 523 523 HOH HOH . N 6 HOH B 24 524 524 HOH HOH . N 6 HOH B 25 525 525 HOH HOH . N 6 HOH B 26 526 526 HOH HOH . N 6 HOH B 27 527 527 HOH HOH . N 6 HOH B 28 528 528 HOH HOH . N 6 HOH B 29 529 529 HOH HOH . N 6 HOH B 30 530 530 HOH HOH . N 6 HOH B 31 531 531 HOH HOH . N 6 HOH B 32 532 532 HOH HOH . N 6 HOH B 33 533 533 HOH HOH . N 6 HOH B 34 534 534 HOH HOH . N 6 HOH B 35 535 535 HOH HOH . N 6 HOH B 36 536 536 HOH HOH . N 6 HOH B 37 537 537 HOH HOH . N 6 HOH B 38 538 538 HOH HOH . N 6 HOH B 39 539 539 HOH HOH . N 6 HOH B 40 540 540 HOH HOH . N 6 HOH B 41 541 541 HOH HOH . N 6 HOH B 42 542 542 HOH HOH . N 6 HOH B 43 543 543 HOH HOH . N 6 HOH B 44 544 544 HOH HOH . N 6 HOH B 45 545 545 HOH HOH . N 6 HOH B 46 546 546 HOH HOH . N 6 HOH B 47 547 547 HOH HOH . N 6 HOH B 48 548 548 HOH HOH . N 6 HOH B 49 549 549 HOH HOH . N 6 HOH B 50 550 550 HOH HOH . N 6 HOH B 51 551 551 HOH HOH . N 6 HOH B 52 552 552 HOH HOH . N 6 HOH B 53 553 553 HOH HOH . N 6 HOH B 54 554 554 HOH HOH . N 6 HOH B 55 555 555 HOH HOH . N 6 HOH B 56 556 556 HOH HOH . N 6 HOH B 57 557 557 HOH HOH . N 6 HOH B 58 558 558 HOH HOH . N 6 HOH B 59 559 559 HOH HOH . N 6 HOH B 60 560 560 HOH HOH . N 6 HOH B 61 561 561 HOH HOH . N 6 HOH B 62 562 562 HOH HOH . N 6 HOH B 63 563 563 HOH HOH . N 6 HOH B 64 564 564 HOH HOH . N 6 HOH B 65 565 565 HOH HOH . N 6 HOH B 66 566 566 HOH HOH . N 6 HOH B 67 567 567 HOH HOH . N 6 HOH B 68 568 568 HOH HOH . N 6 HOH B 69 569 569 HOH HOH . O 6 HOH C 1 501 501 HOH HOH . O 6 HOH C 2 502 502 HOH HOH . O 6 HOH C 3 503 503 HOH HOH . O 6 HOH C 4 504 504 HOH HOH . O 6 HOH C 5 505 505 HOH HOH . O 6 HOH C 6 506 506 HOH HOH . O 6 HOH C 7 507 507 HOH HOH . O 6 HOH C 8 508 508 HOH HOH . O 6 HOH C 9 509 509 HOH HOH . O 6 HOH C 10 510 510 HOH HOH . O 6 HOH C 11 511 511 HOH HOH . O 6 HOH C 12 512 512 HOH HOH . O 6 HOH C 13 513 513 HOH HOH . O 6 HOH C 14 514 514 HOH HOH . O 6 HOH C 15 515 515 HOH HOH . O 6 HOH C 16 516 516 HOH HOH . O 6 HOH C 17 517 517 HOH HOH . O 6 HOH C 18 518 518 HOH HOH . O 6 HOH C 19 519 519 HOH HOH . O 6 HOH C 20 520 520 HOH HOH . O 6 HOH C 21 521 521 HOH HOH . O 6 HOH C 22 522 522 HOH HOH . O 6 HOH C 23 523 523 HOH HOH . O 6 HOH C 24 524 524 HOH HOH . O 6 HOH C 25 525 525 HOH HOH . O 6 HOH C 26 526 526 HOH HOH . O 6 HOH C 27 527 527 HOH HOH . O 6 HOH C 28 528 528 HOH HOH . O 6 HOH C 29 529 529 HOH HOH . O 6 HOH C 30 530 530 HOH HOH . O 6 HOH C 31 531 531 HOH HOH . O 6 HOH C 32 532 532 HOH HOH . O 6 HOH C 33 533 533 HOH HOH . O 6 HOH C 34 534 555 HOH HOH . P 6 HOH D 1 501 501 HOH HOH . P 6 HOH D 2 502 502 HOH HOH . P 6 HOH D 3 503 503 HOH HOH . P 6 HOH D 4 504 504 HOH HOH . P 6 HOH D 5 505 505 HOH HOH . P 6 HOH D 6 506 506 HOH HOH . P 6 HOH D 7 507 507 HOH HOH . P 6 HOH D 8 508 508 HOH HOH . P 6 HOH D 9 509 509 HOH HOH . P 6 HOH D 10 510 510 HOH HOH . P 6 HOH D 11 511 511 HOH HOH . P 6 HOH D 12 512 512 HOH HOH . P 6 HOH D 13 513 513 HOH HOH . P 6 HOH D 14 514 514 HOH HOH . P 6 HOH D 15 515 515 HOH HOH . P 6 HOH D 16 516 516 HOH HOH . P 6 HOH D 17 517 517 HOH HOH . P 6 HOH D 18 518 518 HOH HOH . P 6 HOH D 19 519 519 HOH HOH . P 6 HOH D 20 520 520 HOH HOH . P 6 HOH D 21 521 521 HOH HOH . P 6 HOH D 22 522 522 HOH HOH . P 6 HOH D 23 523 523 HOH HOH . P 6 HOH D 24 524 524 HOH HOH . P 6 HOH D 25 525 525 HOH HOH . P 6 HOH D 26 526 526 HOH HOH . P 6 HOH D 27 527 527 HOH HOH . P 6 HOH D 28 528 528 HOH HOH . P 6 HOH D 29 529 529 HOH HOH . P 6 HOH D 30 530 530 HOH HOH . P 6 HOH D 31 531 531 HOH HOH . P 6 HOH D 32 532 532 HOH HOH . P 6 HOH D 33 533 533 HOH HOH . P 6 HOH D 34 534 534 HOH HOH . P 6 HOH D 35 535 535 HOH HOH . P 6 HOH D 36 536 536 HOH HOH . P 6 HOH D 37 537 537 HOH HOH . P 6 HOH D 38 538 538 HOH HOH . P 6 HOH D 39 539 539 HOH HOH . P 6 HOH D 40 540 540 HOH HOH . P 6 HOH D 41 541 541 HOH HOH . P 6 HOH D 42 542 542 HOH HOH . P 6 HOH D 43 543 543 HOH HOH . P 6 HOH D 44 544 544 HOH HOH . P 6 HOH D 45 545 545 HOH HOH . P 6 HOH D 46 546 546 HOH HOH . P 6 HOH D 47 547 547 HOH HOH . P 6 HOH D 48 548 548 HOH HOH . P 6 HOH D 49 549 549 HOH HOH . P 6 HOH D 50 550 550 HOH HOH . P 6 HOH D 51 551 551 HOH HOH . P 6 HOH D 52 552 552 HOH HOH . P 6 HOH D 53 553 553 HOH HOH . P 6 HOH D 54 554 554 HOH HOH . P 6 HOH D 55 555 556 HOH HOH . P 6 HOH D 56 556 557 HOH HOH . P 6 HOH D 57 557 558 HOH HOH . P 6 HOH D 58 558 559 HOH HOH . P 6 HOH D 59 559 560 HOH HOH . P 6 HOH D 60 560 561 HOH HOH . P 6 HOH D 61 561 562 HOH HOH . P 6 HOH D 62 562 563 HOH HOH . P 6 HOH D 63 563 564 HOH HOH . P 6 HOH D 64 564 565 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 THF . . . G 3 9.685 -17.75 32.358 1 11.22 ? N1 THF 401 B 1 HETATM 2 C C2 THF . . . G 3 9.267 -16.677 31.672 1 11.23 ? C2 THF 401 B 1 HETATM 3 N NA2 THF . . . G 3 9.224 -15.486 32.302 1 11.15 ? NA2 THF 401 B 1 HETATM 4 N N3 THF . . . G 3 8.875 -16.75 30.375 1 11.3 ? N3 THF 401 B 1 HETATM 5 C C4 THF . . . G 3 8.888 -17.913 29.694 1 11.21 ? C4 THF 401 B 1 HETATM 6 O O4 THF . . . G 3 8.539 -17.973 28.501 1 11.22 ? O4 THF 401 B 1 HETATM 7 C C4A THF . . . G 3 9.349 -19.128 30.389 1 11.37 ? C4A THF 401 B 1 HETATM 8 N N5 THF . . . G 3 9.401 -20.405 29.783 1 11.59 ? N5 THF 401 B 1 HETATM 9 C C6 THF . . . G 3 9.94 -21.534 30.533 1 11.45 ? C6 THF 401 B 1 HETATM 10 C C7 THF . . . G 3 10.226 -21.256 31.936 1 11.47 ? C7 THF 401 B 1 HETATM 11 N N8 THF . . . G 3 10.175 -20.034 32.491 1 11.33 ? N8 THF 401 B 1 HETATM 12 C C8A THF . . . G 3 9.748 -18.961 31.8 1 11.29 ? C8A THF 401 B 1 HETATM 13 C C9 THF . . . G 3 11.407 -21.583 30.053 1 11.38 ? C9 THF 401 B 1 HETATM 14 N N10 THF . . . G 3 11.628 -20.99 28.734 1 10.98 ? N10 THF 401 B 1 HETATM 15 C C11 THF . . . G 3 14.539 -18.389 27.205 1 10.48 ? C11 THF 401 B 1 HETATM 16 C C12 THF . . . G 3 14.472 -18.616 28.588 1 10.56 ? C12 THF 401 B 1 HETATM 17 C C13 THF . . . G 3 13.51 -19.481 29.137 1 10.72 ? C13 THF 401 B 1 HETATM 18 C C14 THF . . . G 3 12.6 -20.136 28.295 1 10.77 ? C14 THF 401 B 1 HETATM 19 C C15 THF . . . G 3 12.671 -19.899 26.916 1 10.5 ? C15 THF 401 B 1 HETATM 20 C C16 THF . . . G 3 13.621 -19.033 26.373 1 10.41 ? C16 THF 401 B 1 HETATM 21 C C THF . . . G 3 15.59 -17.44 26.655 1 10.51 ? C THF 401 B 1 HETATM 22 O O THF . . . G 3 16.043 -16.618 27.445 1 10.42 ? O THF 401 B 1 HETATM 23 N N THF . . . G 3 16.009 -17.469 25.366 1 10.37 ? N THF 401 B 1 HETATM 24 C CA THF . . . G 3 17.01 -16.504 24.87 1 10.38 ? CA THF 401 B 1 HETATM 25 C CB THF . . . G 3 18.452 -16.994 25.095 1 10.33 ? CB THF 401 B 1 HETATM 26 C CG THF . . . G 3 19.016 -17.979 24.064 1 10.26 ? CG THF 401 B 1 HETATM 27 C CD THF . . . G 3 20.414 -18.443 24.464 1 10.55 ? CD THF 401 B 1 HETATM 28 O OE1 THF . . . G 3 21.35 -18.395 23.621 1 10.54 ? OE1 THF 401 B 1 HETATM 29 O OE2 THF . . . G 3 20.607 -18.882 25.63 1 10.41 ? OE2 THF 401 B 1 HETATM 30 C CT THF . . . G 3 16.813 -15.966 23.455 1 10.37 ? CT THF 401 B 1 HETATM 31 O O1 THF . . . G 3 16 -16.495 22.666 1 10.22 ? O1 THF 401 B 1 HETATM 32 O O2 THF . . . G 3 17.491 -14.982 23.087 1 10.38 ? O2 THF 401 B 1 HETATM 33 C CP1 THF . . . G 3 8.998 -20.595 28.379 1 11.93 ? CP1 THF 401 B 1 HETATM 34 O O3 THF . . . G 3 8.129 -21.73 28.353 1 12.65 ? O3 THF 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 34 #