data_4O7U # _model_server_result.job_id j4E7A_4IRb1Cb9tYAxYalg _model_server_result.datetime_utc '2024-11-20 15:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":402}' # _entry.id 4O7U # _exptl.entry_id 4O7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.395 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{[(2S)-2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propyl]oxy}-3,5-dimethylphenyl acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.33 _cell.angle_gamma 90 _cell.entry_id 4O7U _cell.length_a 72.082 _cell.length_b 94.225 _cell.length_c 96.816 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,M,N 1 1 C,D,H,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H21 N O5' _chem_comp.formula_weight 367.395 _chem_comp.id SS7 _chem_comp.mon_nstd_flag . _chem_comp.name '4-{[(2S)-2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propyl]oxy}-3,5-dimethylphenyl acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 SS7 doub 303 n y C4 C5 SS7 sing 304 n y C3 C2 SS7 sing 305 n y O11 C8 SS7 doub 306 n n C5 C8 SS7 sing 307 n n C5 C6 SS7 doub 308 n y C2 C1 SS7 doub 309 n y C8 N9 SS7 sing 310 n n C6 C1 SS7 sing 311 n y C6 C7 SS7 sing 312 n n C23 C21 SS7 sing 313 n n N9 C12 SS7 sing 314 n n N9 C7 SS7 sing 315 n n C12 C13 SS7 sing 316 n n C12 C14 SS7 sing 317 n n C7 O10 SS7 doub 318 n n O15 C13 SS7 sing 319 n n O15 C16 SS7 sing 320 n n C21 C16 SS7 doub 321 n y C21 C20 SS7 sing 322 n y C16 C17 SS7 sing 323 n y C20 C19 SS7 doub 324 n y C17 C22 SS7 sing 325 n n C17 C18 SS7 doub 326 n y C26 C25 SS7 sing 327 n n C19 C18 SS7 sing 328 n y C19 O24 SS7 sing 329 n n C25 O24 SS7 sing 330 n n C25 O27 SS7 doub 331 n n C4 H1 SS7 sing 332 n n C3 H2 SS7 sing 333 n n C2 H3 SS7 sing 334 n n C1 H4 SS7 sing 335 n n C12 H5 SS7 sing 336 n n C14 H6 SS7 sing 337 n n C14 H7 SS7 sing 338 n n C14 H8 SS7 sing 339 n n C13 H9 SS7 sing 340 n n C13 H10 SS7 sing 341 n n C22 H11 SS7 sing 342 n n C22 H12 SS7 sing 343 n n C22 H13 SS7 sing 344 n n C18 H14 SS7 sing 345 n n C23 H15 SS7 sing 346 n n C23 H16 SS7 sing 347 n n C23 H17 SS7 sing 348 n n C20 H18 SS7 sing 349 n n C26 H19 SS7 sing 350 n n C26 H20 SS7 sing 351 n n C26 H21 SS7 sing 352 n n # _atom_sites.entry_id 4O7U _atom_sites.fract_transf_matrix[1][1] 0.013873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00105 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 401 401 SO4 SO4 . F 2 SO4 A 1 402 402 SO4 SO4 . G 3 THF B 1 401 401 THF THF . H 2 SO4 C 1 401 401 SO4 SO4 . I 4 EDO C 1 402 402 EDO EDO . J 2 SO4 D 1 401 401 SO4 SO4 . K 5 SS7 D 1 402 402 SS7 SS7 . L 4 EDO D 1 403 403 EDO EDO . M 6 HOH A 1 501 501 HOH HOH . M 6 HOH A 2 502 502 HOH HOH . M 6 HOH A 3 503 503 HOH HOH . M 6 HOH A 4 504 504 HOH HOH . M 6 HOH A 5 505 505 HOH HOH . M 6 HOH A 6 506 506 HOH HOH . M 6 HOH A 7 507 507 HOH HOH . M 6 HOH A 8 508 508 HOH HOH . M 6 HOH A 9 509 509 HOH HOH . M 6 HOH A 10 510 510 HOH HOH . M 6 HOH A 11 511 511 HOH HOH . M 6 HOH A 12 512 512 HOH HOH . M 6 HOH A 13 513 513 HOH HOH . M 6 HOH A 14 514 514 HOH HOH . M 6 HOH A 15 515 515 HOH HOH . M 6 HOH A 16 516 516 HOH HOH . M 6 HOH A 17 517 517 HOH HOH . M 6 HOH A 18 518 518 HOH HOH . M 6 HOH A 19 519 519 HOH HOH . M 6 HOH A 20 520 520 HOH HOH . M 6 HOH A 21 521 521 HOH HOH . M 6 HOH A 22 522 522 HOH HOH . M 6 HOH A 23 523 523 HOH HOH . M 6 HOH A 24 524 524 HOH HOH . M 6 HOH A 25 525 525 HOH HOH . M 6 HOH A 26 526 526 HOH HOH . M 6 HOH A 27 527 527 HOH HOH . M 6 HOH A 28 528 528 HOH HOH . M 6 HOH A 29 529 529 HOH HOH . M 6 HOH A 30 530 530 HOH HOH . M 6 HOH A 31 531 531 HOH HOH . M 6 HOH A 32 532 532 HOH HOH . M 6 HOH A 33 533 533 HOH HOH . M 6 HOH A 34 534 534 HOH HOH . M 6 HOH A 35 535 535 HOH HOH . M 6 HOH A 36 536 536 HOH HOH . M 6 HOH A 37 537 537 HOH HOH . M 6 HOH A 38 538 538 HOH HOH . N 6 HOH B 1 501 501 HOH HOH . N 6 HOH B 2 502 502 HOH HOH . N 6 HOH B 3 503 503 HOH HOH . N 6 HOH B 4 504 504 HOH HOH . N 6 HOH B 5 505 505 HOH HOH . N 6 HOH B 6 506 506 HOH HOH . N 6 HOH B 7 507 507 HOH HOH . N 6 HOH B 8 508 508 HOH HOH . N 6 HOH B 9 509 509 HOH HOH . N 6 HOH B 10 510 510 HOH HOH . N 6 HOH B 11 511 511 HOH HOH . N 6 HOH B 12 512 512 HOH HOH . N 6 HOH B 13 513 513 HOH HOH . N 6 HOH B 14 514 514 HOH HOH . N 6 HOH B 15 515 515 HOH HOH . N 6 HOH B 16 516 516 HOH HOH . N 6 HOH B 17 517 517 HOH HOH . N 6 HOH B 18 518 518 HOH HOH . N 6 HOH B 19 519 519 HOH HOH . N 6 HOH B 20 520 520 HOH HOH . N 6 HOH B 21 521 521 HOH HOH . N 6 HOH B 22 522 522 HOH HOH . N 6 HOH B 23 523 523 HOH HOH . N 6 HOH B 24 524 524 HOH HOH . N 6 HOH B 25 525 525 HOH HOH . N 6 HOH B 26 526 526 HOH HOH . N 6 HOH B 27 527 527 HOH HOH . N 6 HOH B 28 528 528 HOH HOH . N 6 HOH B 29 529 529 HOH HOH . N 6 HOH B 30 530 530 HOH HOH . N 6 HOH B 31 531 531 HOH HOH . N 6 HOH B 32 532 532 HOH HOH . N 6 HOH B 33 533 533 HOH HOH . N 6 HOH B 34 534 534 HOH HOH . N 6 HOH B 35 535 535 HOH HOH . N 6 HOH B 36 536 536 HOH HOH . N 6 HOH B 37 537 537 HOH HOH . N 6 HOH B 38 538 538 HOH HOH . N 6 HOH B 39 539 539 HOH HOH . N 6 HOH B 40 540 540 HOH HOH . N 6 HOH B 41 541 541 HOH HOH . N 6 HOH B 42 542 542 HOH HOH . N 6 HOH B 43 543 543 HOH HOH . N 6 HOH B 44 544 544 HOH HOH . N 6 HOH B 45 545 545 HOH HOH . N 6 HOH B 46 546 546 HOH HOH . N 6 HOH B 47 547 547 HOH HOH . N 6 HOH B 48 548 548 HOH HOH . N 6 HOH B 49 549 549 HOH HOH . N 6 HOH B 50 550 550 HOH HOH . N 6 HOH B 51 551 551 HOH HOH . N 6 HOH B 52 552 552 HOH HOH . N 6 HOH B 53 553 553 HOH HOH . N 6 HOH B 54 554 554 HOH HOH . N 6 HOH B 55 555 555 HOH HOH . N 6 HOH B 56 556 556 HOH HOH . N 6 HOH B 57 557 557 HOH HOH . N 6 HOH B 58 558 558 HOH HOH . N 6 HOH B 59 559 559 HOH HOH . N 6 HOH B 60 560 560 HOH HOH . N 6 HOH B 61 561 561 HOH HOH . N 6 HOH B 62 562 562 HOH HOH . N 6 HOH B 63 563 563 HOH HOH . N 6 HOH B 64 564 564 HOH HOH . N 6 HOH B 65 565 565 HOH HOH . N 6 HOH B 66 566 566 HOH HOH . N 6 HOH B 67 567 567 HOH HOH . N 6 HOH B 68 568 568 HOH HOH . N 6 HOH B 69 569 569 HOH HOH . O 6 HOH C 1 501 501 HOH HOH . O 6 HOH C 2 502 502 HOH HOH . O 6 HOH C 3 503 503 HOH HOH . O 6 HOH C 4 504 504 HOH HOH . O 6 HOH C 5 505 505 HOH HOH . O 6 HOH C 6 506 506 HOH HOH . O 6 HOH C 7 507 507 HOH HOH . O 6 HOH C 8 508 508 HOH HOH . O 6 HOH C 9 509 509 HOH HOH . O 6 HOH C 10 510 510 HOH HOH . O 6 HOH C 11 511 511 HOH HOH . O 6 HOH C 12 512 512 HOH HOH . O 6 HOH C 13 513 513 HOH HOH . O 6 HOH C 14 514 514 HOH HOH . O 6 HOH C 15 515 515 HOH HOH . O 6 HOH C 16 516 516 HOH HOH . O 6 HOH C 17 517 517 HOH HOH . O 6 HOH C 18 518 518 HOH HOH . O 6 HOH C 19 519 519 HOH HOH . O 6 HOH C 20 520 520 HOH HOH . O 6 HOH C 21 521 521 HOH HOH . O 6 HOH C 22 522 522 HOH HOH . O 6 HOH C 23 523 523 HOH HOH . O 6 HOH C 24 524 524 HOH HOH . O 6 HOH C 25 525 525 HOH HOH . O 6 HOH C 26 526 526 HOH HOH . O 6 HOH C 27 527 527 HOH HOH . O 6 HOH C 28 528 528 HOH HOH . O 6 HOH C 29 529 529 HOH HOH . O 6 HOH C 30 530 530 HOH HOH . O 6 HOH C 31 531 531 HOH HOH . O 6 HOH C 32 532 532 HOH HOH . O 6 HOH C 33 533 533 HOH HOH . O 6 HOH C 34 534 555 HOH HOH . P 6 HOH D 1 501 501 HOH HOH . P 6 HOH D 2 502 502 HOH HOH . P 6 HOH D 3 503 503 HOH HOH . P 6 HOH D 4 504 504 HOH HOH . P 6 HOH D 5 505 505 HOH HOH . P 6 HOH D 6 506 506 HOH HOH . P 6 HOH D 7 507 507 HOH HOH . P 6 HOH D 8 508 508 HOH HOH . P 6 HOH D 9 509 509 HOH HOH . P 6 HOH D 10 510 510 HOH HOH . P 6 HOH D 11 511 511 HOH HOH . P 6 HOH D 12 512 512 HOH HOH . P 6 HOH D 13 513 513 HOH HOH . P 6 HOH D 14 514 514 HOH HOH . P 6 HOH D 15 515 515 HOH HOH . P 6 HOH D 16 516 516 HOH HOH . P 6 HOH D 17 517 517 HOH HOH . P 6 HOH D 18 518 518 HOH HOH . P 6 HOH D 19 519 519 HOH HOH . P 6 HOH D 20 520 520 HOH HOH . P 6 HOH D 21 521 521 HOH HOH . P 6 HOH D 22 522 522 HOH HOH . P 6 HOH D 23 523 523 HOH HOH . P 6 HOH D 24 524 524 HOH HOH . P 6 HOH D 25 525 525 HOH HOH . P 6 HOH D 26 526 526 HOH HOH . P 6 HOH D 27 527 527 HOH HOH . P 6 HOH D 28 528 528 HOH HOH . P 6 HOH D 29 529 529 HOH HOH . P 6 HOH D 30 530 530 HOH HOH . P 6 HOH D 31 531 531 HOH HOH . P 6 HOH D 32 532 532 HOH HOH . P 6 HOH D 33 533 533 HOH HOH . P 6 HOH D 34 534 534 HOH HOH . P 6 HOH D 35 535 535 HOH HOH . P 6 HOH D 36 536 536 HOH HOH . P 6 HOH D 37 537 537 HOH HOH . P 6 HOH D 38 538 538 HOH HOH . P 6 HOH D 39 539 539 HOH HOH . P 6 HOH D 40 540 540 HOH HOH . P 6 HOH D 41 541 541 HOH HOH . P 6 HOH D 42 542 542 HOH HOH . P 6 HOH D 43 543 543 HOH HOH . P 6 HOH D 44 544 544 HOH HOH . P 6 HOH D 45 545 545 HOH HOH . P 6 HOH D 46 546 546 HOH HOH . P 6 HOH D 47 547 547 HOH HOH . P 6 HOH D 48 548 548 HOH HOH . P 6 HOH D 49 549 549 HOH HOH . P 6 HOH D 50 550 550 HOH HOH . P 6 HOH D 51 551 551 HOH HOH . P 6 HOH D 52 552 552 HOH HOH . P 6 HOH D 53 553 553 HOH HOH . P 6 HOH D 54 554 554 HOH HOH . P 6 HOH D 55 555 556 HOH HOH . P 6 HOH D 56 556 557 HOH HOH . P 6 HOH D 57 557 558 HOH HOH . P 6 HOH D 58 558 559 HOH HOH . P 6 HOH D 59 559 560 HOH HOH . P 6 HOH D 60 560 561 HOH HOH . P 6 HOH D 61 561 562 HOH HOH . P 6 HOH D 62 562 563 HOH HOH . P 6 HOH D 63 563 564 HOH HOH . P 6 HOH D 64 564 565 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 SS7 . . . K 5 10.805 21.857 18.211 1 11.55 ? O11 SS7 402 D 1 HETATM 2 C C8 SS7 . . . K 5 10.469 20.955 19.042 1 11.21 ? C8 SS7 402 D 1 HETATM 3 C C5 SS7 . . . K 5 10.609 19.6 18.78 1 11.07 ? C5 SS7 402 D 1 HETATM 4 C C4 SS7 . . . K 5 11.091 18.88 17.717 1 10.88 ? C4 SS7 402 D 1 HETATM 5 C C3 SS7 . . . K 5 11.097 17.487 17.824 1 10.86 ? C3 SS7 402 D 1 HETATM 6 C C2 SS7 . . . K 5 10.625 16.845 18.958 1 10.74 ? C2 SS7 402 D 1 HETATM 7 C C1 SS7 . . . K 5 10.151 17.586 20.037 1 10.9 ? C1 SS7 402 D 1 HETATM 8 C C6 SS7 . . . K 5 10.157 18.954 19.906 1 11.03 ? C6 SS7 402 D 1 HETATM 9 C C7 SS7 . . . K 5 9.754 20.049 20.782 1 11.28 ? C7 SS7 402 D 1 HETATM 10 O O10 SS7 . . . K 5 9.203 19.736 22.11 1 11.65 ? O10 SS7 402 D 1 HETATM 11 N N9 SS7 . . . K 5 9.965 21.263 20.232 1 11.36 ? N9 SS7 402 D 1 HETATM 12 C C12 SS7 . . . K 5 9.706 22.628 20.723 1 11.95 ? C12 SS7 402 D 1 HETATM 13 C C14 SS7 . . . K 5 8.639 22.585 21.81 1 11.98 ? C14 SS7 402 D 1 HETATM 14 C C13 SS7 . . . K 5 11.005 23.323 21.186 1 12.82 ? C13 SS7 402 D 1 HETATM 15 O O15 SS7 . . . K 5 12.213 22.565 20.979 1 13.02 ? O15 SS7 402 D 1 HETATM 16 C C16 SS7 . . . K 5 12.772 21.786 21.981 1 13.22 ? C16 SS7 402 D 1 HETATM 17 C C17 SS7 . . . K 5 12.62 22.061 23.341 1 13.31 ? C17 SS7 402 D 1 HETATM 18 C C22 SS7 . . . K 5 11.814 23.246 23.841 1 13.39 ? C22 SS7 402 D 1 HETATM 19 C C18 SS7 . . . K 5 13.227 21.22 24.275 1 13.1 ? C18 SS7 402 D 1 HETATM 20 C C21 SS7 . . . K 5 13.534 20.684 21.611 1 13.19 ? C21 SS7 402 D 1 HETATM 21 C C23 SS7 . . . K 5 13.709 20.38 20.16 1 13.52 ? C23 SS7 402 D 1 HETATM 22 C C20 SS7 . . . K 5 14.137 19.843 22.539 1 13.06 ? C20 SS7 402 D 1 HETATM 23 C C19 SS7 . . . K 5 13.988 20.118 23.883 1 13.04 ? C19 SS7 402 D 1 HETATM 24 O O24 SS7 . . . K 5 14.541 19.338 24.866 1 12.96 ? O24 SS7 402 D 1 HETATM 25 C C25 SS7 . . . K 5 15.728 18.496 24.85 1 12.88 ? C25 SS7 402 D 1 HETATM 26 O O27 SS7 . . . K 5 16.083 18.094 25.963 1 12.71 ? O27 SS7 402 D 1 HETATM 27 C C26 SS7 . . . K 5 16.447 18.132 23.57 1 12.43 ? C26 SS7 402 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #