data_4O7V # _model_server_result.job_id ctBWCBipDTc1kdqL3qPhww _model_server_result.datetime_utc '2024-10-19 21:46:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4O7V # _exptl.entry_id 4O7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O7V _cell.length_a 44.16 _cell.length_b 155.12 _cell.length_c 78.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 44.16 0 -39.15 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 7 n n PB O2B ADP sing 8 n n PB O3B ADP sing 9 n n PB O3A ADP sing 10 n n O2B HOB2 ADP sing 11 n n O3B HOB3 ADP sing 12 n n PA O1A ADP doub 13 n n PA O2A ADP sing 14 n n PA O3A ADP sing 15 n n PA O5' ADP sing 16 n n O2A HOA2 ADP sing 17 n n O5' C5' ADP sing 18 n n C5' C4' ADP sing 19 n n C5' "H5'1" ADP sing 20 n n C5' "H5'2" ADP sing 21 n n C4' O4' ADP sing 22 n n C4' C3' ADP sing 23 n n C4' H4' ADP sing 24 n n O4' C1' ADP sing 25 n n C3' O3' ADP sing 26 n n C3' C2' ADP sing 27 n n C3' H3' ADP sing 28 n n O3' HO3' ADP sing 29 n n C2' O2' ADP sing 30 n n C2' C1' ADP sing 31 n n C2' H2' ADP sing 32 n n O2' HO2' ADP sing 33 n n C1' N9 ADP sing 34 n n C1' H1' ADP sing 35 n n N9 C8 ADP sing 36 n y N9 C4 ADP sing 37 n y C8 N7 ADP doub 38 n y C8 H8 ADP sing 39 n n N7 C5 ADP sing 40 n y C5 C6 ADP sing 41 n y C5 C4 ADP doub 42 n y C6 N6 ADP sing 43 n n C6 N1 ADP doub 44 n y N6 HN61 ADP sing 45 n n N6 HN62 ADP sing 46 n n N1 C2 ADP sing 47 n y C2 N3 ADP doub 48 n y C2 H2 ADP sing 49 n n N3 C4 ADP sing 50 n y # _atom_sites.entry_id 4O7V _atom_sites.fract_transf_matrix[1][1] 0.022645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 420 UDP UDP . C 3 ADP A 1 302 422 ADP ADP . D 4 U5P A 1 303 430 U5P U5P . E 5 ACT A 1 304 502 ACT ACT . F 6 PO4 A 1 305 501 PO4 PO4 . G 7 HOH A 1 401 300 HOH HOH . G 7 HOH A 2 402 301 HOH HOH . G 7 HOH A 3 403 302 HOH HOH . G 7 HOH A 4 404 303 HOH HOH . G 7 HOH A 5 405 304 HOH HOH . G 7 HOH A 6 406 305 HOH HOH . G 7 HOH A 7 407 306 HOH HOH . G 7 HOH A 8 408 307 HOH HOH . G 7 HOH A 9 409 308 HOH HOH . G 7 HOH A 10 410 309 HOH HOH . G 7 HOH A 11 411 310 HOH HOH . G 7 HOH A 12 412 311 HOH HOH . G 7 HOH A 13 413 312 HOH HOH . G 7 HOH A 14 414 313 HOH HOH . G 7 HOH A 15 415 314 HOH HOH . G 7 HOH A 16 416 315 HOH HOH . G 7 HOH A 17 417 316 HOH HOH . G 7 HOH A 18 418 317 HOH HOH . G 7 HOH A 19 419 318 HOH HOH . G 7 HOH A 20 420 319 HOH HOH . G 7 HOH A 21 421 320 HOH HOH . G 7 HOH A 22 422 321 HOH HOH . G 7 HOH A 23 423 322 HOH HOH . G 7 HOH A 24 424 323 HOH HOH . G 7 HOH A 25 425 324 HOH HOH . G 7 HOH A 26 426 325 HOH HOH . G 7 HOH A 27 427 326 HOH HOH . G 7 HOH A 28 428 327 HOH HOH . G 7 HOH A 29 429 328 HOH HOH . G 7 HOH A 30 430 329 HOH HOH . G 7 HOH A 31 431 330 HOH HOH . G 7 HOH A 32 432 331 HOH HOH . G 7 HOH A 33 433 332 HOH HOH . G 7 HOH A 34 434 333 HOH HOH . G 7 HOH A 35 435 334 HOH HOH . G 7 HOH A 36 436 335 HOH HOH . G 7 HOH A 37 437 336 HOH HOH . G 7 HOH A 38 438 337 HOH HOH . G 7 HOH A 39 439 338 HOH HOH . G 7 HOH A 40 440 339 HOH HOH . G 7 HOH A 41 441 340 HOH HOH . G 7 HOH A 42 442 341 HOH HOH . G 7 HOH A 43 443 342 HOH HOH . G 7 HOH A 44 444 343 HOH HOH . G 7 HOH A 45 445 344 HOH HOH . G 7 HOH A 46 446 345 HOH HOH . G 7 HOH A 47 447 346 HOH HOH . G 7 HOH A 48 448 347 HOH HOH . G 7 HOH A 49 449 348 HOH HOH . G 7 HOH A 50 450 349 HOH HOH . G 7 HOH A 51 451 350 HOH HOH . G 7 HOH A 52 452 351 HOH HOH . G 7 HOH A 53 453 352 HOH HOH . G 7 HOH A 54 454 353 HOH HOH . G 7 HOH A 55 455 354 HOH HOH . G 7 HOH A 56 456 355 HOH HOH . G 7 HOH A 57 457 356 HOH HOH . G 7 HOH A 58 458 357 HOH HOH . G 7 HOH A 59 459 358 HOH HOH . G 7 HOH A 60 460 359 HOH HOH . G 7 HOH A 61 461 360 HOH HOH . G 7 HOH A 62 462 361 HOH HOH . G 7 HOH A 63 463 362 HOH HOH . G 7 HOH A 64 464 363 HOH HOH . G 7 HOH A 65 465 364 HOH HOH . G 7 HOH A 66 466 365 HOH HOH . G 7 HOH A 67 467 366 HOH HOH . G 7 HOH A 68 468 367 HOH HOH . G 7 HOH A 69 469 368 HOH HOH . G 7 HOH A 70 470 369 HOH HOH . G 7 HOH A 71 471 370 HOH HOH . G 7 HOH A 72 472 371 HOH HOH . G 7 HOH A 73 473 372 HOH HOH . G 7 HOH A 74 474 373 HOH HOH . G 7 HOH A 75 475 374 HOH HOH . G 7 HOH A 76 476 375 HOH HOH . G 7 HOH A 77 477 376 HOH HOH . G 7 HOH A 78 478 377 HOH HOH . G 7 HOH A 79 479 378 HOH HOH . G 7 HOH A 80 480 379 HOH HOH . G 7 HOH A 81 481 380 HOH HOH . G 7 HOH A 82 482 381 HOH HOH . G 7 HOH A 83 483 382 HOH HOH . G 7 HOH A 84 484 383 HOH HOH . G 7 HOH A 85 485 384 HOH HOH . G 7 HOH A 86 486 385 HOH HOH . G 7 HOH A 87 487 386 HOH HOH . G 7 HOH A 88 488 387 HOH HOH . G 7 HOH A 89 489 388 HOH HOH . G 7 HOH A 90 490 389 HOH HOH . G 7 HOH A 91 491 390 HOH HOH . G 7 HOH A 92 492 391 HOH HOH . G 7 HOH A 93 493 392 HOH HOH . G 7 HOH A 94 494 393 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 22.693 -16.814 0.179 0.7 48.36 ? PB ADP 302 A 1 HETATM 2 O O1B ADP . . . C 3 21.318 -16.373 -0.261 0.7 45.71 ? O1B ADP 302 A 1 HETATM 3 O O2B ADP . . . C 3 23.641 -17.172 -0.943 0.7 47.42 ? O2B ADP 302 A 1 HETATM 4 O O3B ADP . . . C 3 22.676 -17.828 1.287 0.7 47.56 ? O3B ADP 302 A 1 HETATM 5 P PA ADP . . . C 3 23.873 -15.268 2.32 0.7 48.07 ? PA ADP 302 A 1 HETATM 6 O O1A ADP . . . C 3 25.113 -14.404 2.199 0.7 47.64 ? O1A ADP 302 A 1 HETATM 7 O O2A ADP . . . C 3 22.715 -14.838 3.191 0.7 46.67 ? O2A ADP 302 A 1 HETATM 8 O O3A ADP . . . C 3 23.326 -15.462 0.809 0.7 49.07 ? O3A ADP 302 A 1 HETATM 9 O O5' ADP . . . C 3 24.302 -16.749 2.798 0.7 46.84 ? O5' ADP 302 A 1 HETATM 10 C C5' ADP . . . C 3 25.373 -17.012 3.709 0.7 41.77 ? C5' ADP 302 A 1 HETATM 11 C C4' ADP . . . C 3 26.335 -18.044 3.117 0.7 38.53 ? C4' ADP 302 A 1 HETATM 12 O O4' ADP . . . C 3 26.287 -19.276 3.855 0.7 36.5 ? O4' ADP 302 A 1 HETATM 13 C C3' ADP . . . C 3 26.009 -18.393 1.669 0.7 37.18 ? C3' ADP 302 A 1 HETATM 14 O O3' ADP . . . C 3 27.201 -18.24 0.894 0.7 37.91 ? O3' ADP 302 A 1 HETATM 15 C C2' ADP . . . C 3 25.547 -19.841 1.706 0.7 35.29 ? C2' ADP 302 A 1 HETATM 16 O O2' ADP . . . C 3 25.912 -20.575 0.538 0.7 34.49 ? O2' ADP 302 A 1 HETATM 17 C C1' ADP . . . C 3 26.267 -20.376 2.933 0.7 34.53 ? C1' ADP 302 A 1 HETATM 18 N N9 ADP . . . C 3 25.655 -21.601 3.525 0.7 32.54 ? N9 ADP 302 A 1 HETATM 19 C C8 ADP . . . C 3 24.344 -21.911 3.626 0.7 30.25 ? C8 ADP 302 A 1 HETATM 20 N N7 ADP . . . C 3 24.179 -23.118 4.225 0.7 29.7 ? N7 ADP 302 A 1 HETATM 21 C C5 ADP . . . C 3 25.408 -23.606 4.528 0.7 30.65 ? C5 ADP 302 A 1 HETATM 22 C C6 ADP . . . C 3 25.989 -24.827 5.167 0.7 29.38 ? C6 ADP 302 A 1 HETATM 23 N N6 ADP . . . C 3 25.213 -25.825 5.644 0.7 27.47 ? N6 ADP 302 A 1 HETATM 24 N N1 ADP . . . C 3 27.338 -24.926 5.263 0.7 30 ? N1 ADP 302 A 1 HETATM 25 C C2 ADP . . . C 3 28.162 -23.965 4.811 0.7 29.51 ? C2 ADP 302 A 1 HETATM 26 N N3 ADP . . . C 3 27.706 -22.841 4.232 0.7 30.58 ? N3 ADP 302 A 1 HETATM 27 C C4 ADP . . . C 3 26.375 -22.601 4.059 0.7 31.51 ? C4 ADP 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #