data_4O7W # _model_server_result.job_id d5WeCXm_lDJvdM71Ld_j6w _model_server_result.datetime_utc '2025-08-03 08:03:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4O7W # _exptl.entry_id 4O7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O7W _cell.length_a 44.15 _cell.length_b 154.53 _cell.length_c 78.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 44.15 0 -39.215 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 76 n n PG O2G ATP sing 77 n n PG O3G ATP sing 78 n n PG O3B ATP sing 79 n n O2G HOG2 ATP sing 80 n n O3G HOG3 ATP sing 81 n n PB O1B ATP doub 82 n n PB O2B ATP sing 83 n n PB O3B ATP sing 84 n n PB O3A ATP sing 85 n n O2B HOB2 ATP sing 86 n n PA O1A ATP doub 87 n n PA O2A ATP sing 88 n n PA O3A ATP sing 89 n n PA O5' ATP sing 90 n n O2A HOA2 ATP sing 91 n n O5' C5' ATP sing 92 n n C5' C4' ATP sing 93 n n C5' "H5'1" ATP sing 94 n n C5' "H5'2" ATP sing 95 n n C4' O4' ATP sing 96 n n C4' C3' ATP sing 97 n n C4' H4' ATP sing 98 n n O4' C1' ATP sing 99 n n C3' O3' ATP sing 100 n n C3' C2' ATP sing 101 n n C3' H3' ATP sing 102 n n O3' HO3' ATP sing 103 n n C2' O2' ATP sing 104 n n C2' C1' ATP sing 105 n n C2' H2' ATP sing 106 n n O2' HO2' ATP sing 107 n n C1' N9 ATP sing 108 n n C1' H1' ATP sing 109 n n N9 C8 ATP sing 110 n y N9 C4 ATP sing 111 n y C8 N7 ATP doub 112 n y C8 H8 ATP sing 113 n n N7 C5 ATP sing 114 n y C5 C6 ATP sing 115 n y C5 C4 ATP doub 116 n y C6 N6 ATP sing 117 n n C6 N1 ATP doub 118 n y N6 HN61 ATP sing 119 n n N6 HN62 ATP sing 120 n n N1 C2 ATP sing 121 n y C2 N3 ATP doub 122 n y C2 H2 ATP sing 123 n n N3 C4 ATP sing 124 n y # _atom_sites.entry_id 4O7W _atom_sites.fract_transf_matrix[1][1] 0.02265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TYD A 1 301 420 TYD TYD . C 3 ATP A 1 302 422 ATP ATP . D 4 PO4 A 1 303 501 PO4 PO4 . E 5 ACT A 1 304 502 ACT ACT . F 6 HOH A 1 401 295 HOH HOH . F 6 HOH A 2 402 296 HOH HOH . F 6 HOH A 3 403 297 HOH HOH . F 6 HOH A 4 404 298 HOH HOH . F 6 HOH A 5 405 299 HOH HOH . F 6 HOH A 6 406 300 HOH HOH . F 6 HOH A 7 407 301 HOH HOH . F 6 HOH A 8 408 302 HOH HOH . F 6 HOH A 9 409 303 HOH HOH . F 6 HOH A 10 410 304 HOH HOH . F 6 HOH A 11 411 305 HOH HOH . F 6 HOH A 12 412 306 HOH HOH . F 6 HOH A 13 413 307 HOH HOH . F 6 HOH A 14 414 308 HOH HOH . F 6 HOH A 15 415 309 HOH HOH . F 6 HOH A 16 416 310 HOH HOH . F 6 HOH A 17 417 311 HOH HOH . F 6 HOH A 18 418 312 HOH HOH . F 6 HOH A 19 419 313 HOH HOH . F 6 HOH A 20 420 314 HOH HOH . F 6 HOH A 21 421 315 HOH HOH . F 6 HOH A 22 422 316 HOH HOH . F 6 HOH A 23 423 317 HOH HOH . F 6 HOH A 24 424 318 HOH HOH . F 6 HOH A 25 425 319 HOH HOH . F 6 HOH A 26 426 320 HOH HOH . F 6 HOH A 27 427 321 HOH HOH . F 6 HOH A 28 428 322 HOH HOH . F 6 HOH A 29 429 323 HOH HOH . F 6 HOH A 30 430 324 HOH HOH . F 6 HOH A 31 431 325 HOH HOH . F 6 HOH A 32 432 326 HOH HOH . F 6 HOH A 33 433 327 HOH HOH . F 6 HOH A 34 434 328 HOH HOH . F 6 HOH A 35 435 329 HOH HOH . F 6 HOH A 36 436 330 HOH HOH . F 6 HOH A 37 437 331 HOH HOH . F 6 HOH A 38 438 332 HOH HOH . F 6 HOH A 39 439 333 HOH HOH . F 6 HOH A 40 440 334 HOH HOH . F 6 HOH A 41 441 335 HOH HOH . F 6 HOH A 42 442 336 HOH HOH . F 6 HOH A 43 443 337 HOH HOH . F 6 HOH A 44 444 338 HOH HOH . F 6 HOH A 45 445 339 HOH HOH . F 6 HOH A 46 446 340 HOH HOH . F 6 HOH A 47 447 341 HOH HOH . F 6 HOH A 48 448 342 HOH HOH . F 6 HOH A 49 449 343 HOH HOH . F 6 HOH A 50 450 344 HOH HOH . F 6 HOH A 51 451 345 HOH HOH . F 6 HOH A 52 452 346 HOH HOH . F 6 HOH A 53 453 347 HOH HOH . F 6 HOH A 54 454 348 HOH HOH . F 6 HOH A 55 455 349 HOH HOH . F 6 HOH A 56 456 350 HOH HOH . F 6 HOH A 57 457 351 HOH HOH . F 6 HOH A 58 458 352 HOH HOH . F 6 HOH A 59 459 353 HOH HOH . F 6 HOH A 60 460 354 HOH HOH . F 6 HOH A 61 461 355 HOH HOH . F 6 HOH A 62 462 356 HOH HOH . F 6 HOH A 63 463 357 HOH HOH . F 6 HOH A 64 464 358 HOH HOH . F 6 HOH A 65 465 359 HOH HOH . F 6 HOH A 66 466 360 HOH HOH . F 6 HOH A 67 467 361 HOH HOH . F 6 HOH A 68 468 362 HOH HOH . F 6 HOH A 69 469 363 HOH HOH . F 6 HOH A 70 470 364 HOH HOH . F 6 HOH A 71 471 365 HOH HOH . F 6 HOH A 72 472 366 HOH HOH . F 6 HOH A 73 473 367 HOH HOH . F 6 HOH A 74 474 368 HOH HOH . F 6 HOH A 75 475 369 HOH HOH . F 6 HOH A 76 476 370 HOH HOH . F 6 HOH A 77 477 371 HOH HOH . F 6 HOH A 78 478 372 HOH HOH . F 6 HOH A 79 479 373 HOH HOH . F 6 HOH A 80 480 374 HOH HOH . F 6 HOH A 81 481 375 HOH HOH . F 6 HOH A 82 482 376 HOH HOH . F 6 HOH A 83 483 377 HOH HOH . F 6 HOH A 84 484 378 HOH HOH . F 6 HOH A 85 485 379 HOH HOH . F 6 HOH A 86 486 380 HOH HOH . F 6 HOH A 87 487 381 HOH HOH . F 6 HOH A 88 488 382 HOH HOH . F 6 HOH A 89 489 383 HOH HOH . F 6 HOH A 90 490 384 HOH HOH . F 6 HOH A 91 491 385 HOH HOH . F 6 HOH A 92 492 386 HOH HOH . F 6 HOH A 93 493 387 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 26.181 -15.243 -0.982 0.7 45.55 ? PG ATP 302 A 1 HETATM 2 O O1G ATP . . . C 3 27.209 -14.404 -1.708 0.7 45.7 ? O1G ATP 302 A 1 HETATM 3 O O2G ATP . . . C 3 26.714 -15.921 0.251 0.7 44.95 ? O2G ATP 302 A 1 HETATM 4 O O3G ATP . . . C 3 25.342 -16.118 -1.878 0.7 44.49 ? O3G ATP 302 A 1 HETATM 5 P PB ATP . . . C 3 24.934 -13.754 1.108 0.7 41.05 ? PB ATP 302 A 1 HETATM 6 O O1B ATP . . . C 3 26.287 -13.39 1.664 0.7 40.2 ? O1B ATP 302 A 1 HETATM 7 O O2B ATP . . . C 3 23.818 -12.737 1.103 0.7 40.91 ? O2B ATP 302 A 1 HETATM 8 O O3B ATP . . . C 3 25.106 -14.176 -0.437 0.7 43.02 ? O3B ATP 302 A 1 HETATM 9 P PA ATP . . . C 3 23.387 -15.079 3.113 0.7 33.71 ? PA ATP 302 A 1 HETATM 10 O O1A ATP . . . C 3 22.104 -15.756 2.703 0.7 34.21 ? O1A ATP 302 A 1 HETATM 11 O O2A ATP . . . C 3 23.281 -13.709 3.743 0.7 34.28 ? O2A ATP 302 A 1 HETATM 12 O O3A ATP . . . C 3 24.394 -15.092 1.845 0.7 36.41 ? O3A ATP 302 A 1 HETATM 13 O O5' ATP . . . C 3 24.161 -16.014 4.182 0.7 31.79 ? O5' ATP 302 A 1 HETATM 14 C C5' ATP . . . C 3 24.231 -17.441 4.051 0.7 27.93 ? C5' ATP 302 A 1 HETATM 15 C C4' ATP . . . C 3 25.586 -17.885 3.493 0.7 24.97 ? C4' ATP 302 A 1 HETATM 16 O O4' ATP . . . C 3 25.984 -19.157 4.038 0.7 23.65 ? O4' ATP 302 A 1 HETATM 17 C C3' ATP . . . C 3 25.52 -18.126 2.001 0.7 24.12 ? C3' ATP 302 A 1 HETATM 18 O O3' ATP . . . C 3 26.831 -17.869 1.497 0.7 23.7 ? O3' ATP 302 A 1 HETATM 19 C C2' ATP . . . C 3 25.216 -19.613 1.889 0.7 22.93 ? C2' ATP 302 A 1 HETATM 20 O O2' ATP . . . C 3 25.586 -20.168 0.634 0.7 22.16 ? O2' ATP 302 A 1 HETATM 21 C C1' ATP . . . C 3 26.047 -20.176 3.024 0.7 21.83 ? C1' ATP 302 A 1 HETATM 22 N N9 ATP . . . C 3 25.51 -21.449 3.574 0.7 20.8 ? N9 ATP 302 A 1 HETATM 23 C C8 ATP . . . C 3 24.217 -21.811 3.679 0.7 19.19 ? C8 ATP 302 A 1 HETATM 24 N N7 ATP . . . C 3 24.1 -23.032 4.244 0.7 18.81 ? N7 ATP 302 A 1 HETATM 25 C C5 ATP . . . C 3 25.347 -23.469 4.535 0.7 19.4 ? C5 ATP 302 A 1 HETATM 26 C C6 ATP . . . C 3 25.973 -24.677 5.146 0.7 18.64 ? C6 ATP 302 A 1 HETATM 27 N N6 ATP . . . C 3 25.232 -25.71 5.598 0.7 17.48 ? N6 ATP 302 A 1 HETATM 28 N N1 ATP . . . C 3 27.325 -24.721 5.224 0.7 19.02 ? N1 ATP 302 A 1 HETATM 29 C C2 ATP . . . C 3 28.11 -23.719 4.798 0.7 18.38 ? C2 ATP 302 A 1 HETATM 30 N N3 ATP . . . C 3 27.613 -22.604 4.251 0.7 18.84 ? N3 ATP 302 A 1 HETATM 31 C C4 ATP . . . C 3 26.274 -22.42 4.09 0.7 19.69 ? C4 ATP 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #