data_4O86 # _model_server_result.job_id tyqQF3PXBnBxRbTMyfc-7A _model_server_result.datetime_utc '2025-01-02 21:16:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 4O86 # _exptl.entry_id 4O86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O86 _cell.length_a 44.25 _cell.length_b 155.54 _cell.length_c 78.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 44.25 0 -39.175 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MG MG . A MG 505 1_555 G O3 PO4 . A PO4 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 F MG MG . A MG 505 1_555 G O4 PO4 . A PO4 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc3 F MG MG . A MG 505 1_555 H O3B ADP . A ADP 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc4 F MG MG . A MG 505 1_555 H O2A ADP . A ADP 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc5 F MG MG . A MG 505 1_555 I O HOH . A HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc6 F MG MG . A MG 505 1_555 I O HOH . A HOH 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O86 _atom_sites.fract_transf_matrix[1][1] 0.022599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 501 PO4 PO4 . C 3 CDP A 1 502 420 CDP CDP . D 4 C5P A 1 503 430 C5P C5P . E 5 ACT A 1 504 502 ACT ACT . F 6 MG A 1 505 505 MG MG . G 2 PO4 A 1 506 442 PO4 PO4 . H 7 ADP A 1 507 422 ADP ADP . I 8 HOH A 1 601 301 HOH HOH . I 8 HOH A 2 602 302 HOH HOH . I 8 HOH A 3 603 303 HOH HOH . I 8 HOH A 4 604 304 HOH HOH . I 8 HOH A 5 605 305 HOH HOH . I 8 HOH A 6 606 306 HOH HOH . I 8 HOH A 7 607 307 HOH HOH . I 8 HOH A 8 608 308 HOH HOH . I 8 HOH A 9 609 309 HOH HOH . I 8 HOH A 10 610 310 HOH HOH . I 8 HOH A 11 611 311 HOH HOH . I 8 HOH A 12 612 312 HOH HOH . I 8 HOH A 13 613 313 HOH HOH . I 8 HOH A 14 614 314 HOH HOH . I 8 HOH A 15 615 315 HOH HOH . I 8 HOH A 16 616 316 HOH HOH . I 8 HOH A 17 617 317 HOH HOH . I 8 HOH A 18 618 318 HOH HOH . I 8 HOH A 19 619 319 HOH HOH . I 8 HOH A 20 620 320 HOH HOH . I 8 HOH A 21 621 321 HOH HOH . I 8 HOH A 22 622 322 HOH HOH . I 8 HOH A 23 623 323 HOH HOH . I 8 HOH A 24 624 324 HOH HOH . I 8 HOH A 25 625 325 HOH HOH . I 8 HOH A 26 626 326 HOH HOH . I 8 HOH A 27 627 327 HOH HOH . I 8 HOH A 28 628 328 HOH HOH . I 8 HOH A 29 629 329 HOH HOH . I 8 HOH A 30 630 330 HOH HOH . I 8 HOH A 31 631 331 HOH HOH . I 8 HOH A 32 632 332 HOH HOH . I 8 HOH A 33 633 333 HOH HOH . I 8 HOH A 34 634 334 HOH HOH . I 8 HOH A 35 635 335 HOH HOH . I 8 HOH A 36 636 336 HOH HOH . I 8 HOH A 37 637 337 HOH HOH . I 8 HOH A 38 638 338 HOH HOH . I 8 HOH A 39 639 339 HOH HOH . I 8 HOH A 40 640 340 HOH HOH . I 8 HOH A 41 641 341 HOH HOH . I 8 HOH A 42 642 342 HOH HOH . I 8 HOH A 43 643 343 HOH HOH . I 8 HOH A 44 644 344 HOH HOH . I 8 HOH A 45 645 345 HOH HOH . I 8 HOH A 46 646 346 HOH HOH . I 8 HOH A 47 647 347 HOH HOH . I 8 HOH A 48 648 348 HOH HOH . I 8 HOH A 49 649 349 HOH HOH . I 8 HOH A 50 650 350 HOH HOH . I 8 HOH A 51 651 351 HOH HOH . I 8 HOH A 52 652 352 HOH HOH . I 8 HOH A 53 653 353 HOH HOH . I 8 HOH A 54 654 354 HOH HOH . I 8 HOH A 55 655 355 HOH HOH . I 8 HOH A 56 656 356 HOH HOH . I 8 HOH A 57 657 357 HOH HOH . I 8 HOH A 58 658 358 HOH HOH . I 8 HOH A 59 659 359 HOH HOH . I 8 HOH A 60 660 360 HOH HOH . I 8 HOH A 61 661 361 HOH HOH . I 8 HOH A 62 662 362 HOH HOH . I 8 HOH A 63 663 363 HOH HOH . I 8 HOH A 64 664 364 HOH HOH . I 8 HOH A 65 665 365 HOH HOH . I 8 HOH A 66 666 366 HOH HOH . I 8 HOH A 67 667 367 HOH HOH . I 8 HOH A 68 668 368 HOH HOH . I 8 HOH A 69 669 369 HOH HOH . I 8 HOH A 70 670 370 HOH HOH . I 8 HOH A 71 671 371 HOH HOH . I 8 HOH A 72 672 372 HOH HOH . I 8 HOH A 73 673 373 HOH HOH . I 8 HOH A 74 674 374 HOH HOH . I 8 HOH A 75 675 375 HOH HOH . I 8 HOH A 76 676 376 HOH HOH . I 8 HOH A 77 677 377 HOH HOH . I 8 HOH A 78 678 378 HOH HOH . I 8 HOH A 79 679 379 HOH HOH . I 8 HOH A 80 680 380 HOH HOH . I 8 HOH A 81 681 381 HOH HOH . I 8 HOH A 82 682 382 HOH HOH . I 8 HOH A 83 683 383 HOH HOH . I 8 HOH A 84 684 384 HOH HOH . I 8 HOH A 85 685 385 HOH HOH . I 8 HOH A 86 686 386 HOH HOH . I 8 HOH A 87 687 387 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 21.882 _atom_site.Cartn_y -16.393 _atom_site.Cartn_z 0.066 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 505 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 529 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 1 #