data_4O8T # _model_server_result.job_id JDoPDIUwtTGntM7SPeUYFQ _model_server_result.datetime_utc '2025-01-02 22:05:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4O8T # _exptl.entry_id 4O8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.8 _cell.angle_gamma 90 _cell.entry_id 4O8T _cell.length_a 155.57 _cell.length_b 113.33 _cell.length_c 81.34 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I 1 1 C,D,J,K 2 1 E,F,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4O8T _atom_sites.fract_transf_matrix[1][1] 0.006428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 301 1 GOL GOL . H 3 HOH A 1 401 1 HOH HOH . H 3 HOH A 2 402 12 HOH HOH . H 3 HOH A 3 403 22 HOH HOH . H 3 HOH A 4 404 26 HOH HOH . H 3 HOH A 5 405 29 HOH HOH . H 3 HOH A 6 406 33 HOH HOH . H 3 HOH A 7 407 40 HOH HOH . H 3 HOH A 8 408 47 HOH HOH . H 3 HOH A 9 409 49 HOH HOH . H 3 HOH A 10 410 50 HOH HOH . H 3 HOH A 11 411 65 HOH HOH . H 3 HOH A 12 412 73 HOH HOH . H 3 HOH A 13 413 75 HOH HOH . H 3 HOH A 14 414 76 HOH HOH . H 3 HOH A 15 415 79 HOH HOH . H 3 HOH A 16 416 81 HOH HOH . H 3 HOH A 17 417 84 HOH HOH . H 3 HOH A 18 418 85 HOH HOH . H 3 HOH A 19 419 87 HOH HOH . H 3 HOH A 20 420 95 HOH HOH . H 3 HOH A 21 421 97 HOH HOH . H 3 HOH A 22 422 99 HOH HOH . H 3 HOH A 23 423 100 HOH HOH . H 3 HOH A 24 424 102 HOH HOH . H 3 HOH A 25 425 110 HOH HOH . H 3 HOH A 26 426 112 HOH HOH . H 3 HOH A 27 427 128 HOH HOH . H 3 HOH A 28 428 130 HOH HOH . H 3 HOH A 29 429 134 HOH HOH . H 3 HOH A 30 430 142 HOH HOH . H 3 HOH A 31 431 164 HOH HOH . H 3 HOH A 32 432 168 HOH HOH . H 3 HOH A 33 433 170 HOH HOH . H 3 HOH A 34 434 176 HOH HOH . H 3 HOH A 35 435 180 HOH HOH . H 3 HOH A 36 436 183 HOH HOH . H 3 HOH A 37 437 188 HOH HOH . H 3 HOH A 38 438 208 HOH HOH . H 3 HOH A 39 439 209 HOH HOH . H 3 HOH A 40 440 210 HOH HOH . H 3 HOH A 41 441 217 HOH HOH . H 3 HOH A 42 442 218 HOH HOH . H 3 HOH A 43 443 220 HOH HOH . H 3 HOH A 44 444 227 HOH HOH . H 3 HOH A 45 445 229 HOH HOH . I 3 HOH B 1 301 7 HOH HOH . I 3 HOH B 2 302 8 HOH HOH . I 3 HOH B 3 303 20 HOH HOH . I 3 HOH B 4 304 24 HOH HOH . I 3 HOH B 5 305 30 HOH HOH . I 3 HOH B 6 306 32 HOH HOH . I 3 HOH B 7 307 35 HOH HOH . I 3 HOH B 8 308 41 HOH HOH . I 3 HOH B 9 309 46 HOH HOH . I 3 HOH B 10 310 57 HOH HOH . I 3 HOH B 11 311 59 HOH HOH . I 3 HOH B 12 312 60 HOH HOH . I 3 HOH B 13 313 68 HOH HOH . I 3 HOH B 14 314 92 HOH HOH . I 3 HOH B 15 315 103 HOH HOH . I 3 HOH B 16 316 107 HOH HOH . I 3 HOH B 17 317 114 HOH HOH . I 3 HOH B 18 318 116 HOH HOH . I 3 HOH B 19 319 133 HOH HOH . I 3 HOH B 20 320 135 HOH HOH . I 3 HOH B 21 321 141 HOH HOH . I 3 HOH B 22 322 145 HOH HOH . I 3 HOH B 23 323 148 HOH HOH . I 3 HOH B 24 324 158 HOH HOH . I 3 HOH B 25 325 161 HOH HOH . I 3 HOH B 26 326 167 HOH HOH . I 3 HOH B 27 327 172 HOH HOH . I 3 HOH B 28 328 174 HOH HOH . I 3 HOH B 29 329 177 HOH HOH . I 3 HOH B 30 330 193 HOH HOH . I 3 HOH B 31 331 204 HOH HOH . I 3 HOH B 32 332 224 HOH HOH . I 3 HOH B 33 333 228 HOH HOH . I 3 HOH B 34 334 230 HOH HOH . I 3 HOH B 35 335 231 HOH HOH . J 3 HOH C 1 301 11 HOH HOH . J 3 HOH C 2 302 16 HOH HOH . J 3 HOH C 3 303 25 HOH HOH . J 3 HOH C 4 304 39 HOH HOH . J 3 HOH C 5 305 51 HOH HOH . J 3 HOH C 6 306 54 HOH HOH . J 3 HOH C 7 307 55 HOH HOH . J 3 HOH C 8 308 64 HOH HOH . J 3 HOH C 9 309 77 HOH HOH . J 3 HOH C 10 310 80 HOH HOH . J 3 HOH C 11 311 83 HOH HOH . J 3 HOH C 12 312 89 HOH HOH . J 3 HOH C 13 313 96 HOH HOH . J 3 HOH C 14 314 105 HOH HOH . J 3 HOH C 15 315 106 HOH HOH . J 3 HOH C 16 316 113 HOH HOH . J 3 HOH C 17 317 117 HOH HOH . J 3 HOH C 18 318 122 HOH HOH . J 3 HOH C 19 319 123 HOH HOH . J 3 HOH C 20 320 124 HOH HOH . J 3 HOH C 21 321 144 HOH HOH . J 3 HOH C 22 322 147 HOH HOH . J 3 HOH C 23 323 160 HOH HOH . J 3 HOH C 24 324 182 HOH HOH . J 3 HOH C 25 325 187 HOH HOH . J 3 HOH C 26 326 192 HOH HOH . J 3 HOH C 27 327 194 HOH HOH . J 3 HOH C 28 328 196 HOH HOH . J 3 HOH C 29 329 198 HOH HOH . J 3 HOH C 30 330 202 HOH HOH . J 3 HOH C 31 331 205 HOH HOH . J 3 HOH C 32 332 212 HOH HOH . J 3 HOH C 33 333 213 HOH HOH . J 3 HOH C 34 334 219 HOH HOH . J 3 HOH C 35 335 225 HOH HOH . J 3 HOH C 36 336 226 HOH HOH . J 3 HOH C 37 337 233 HOH HOH . K 3 HOH D 1 301 9 HOH HOH . K 3 HOH D 2 302 14 HOH HOH . K 3 HOH D 3 303 17 HOH HOH . K 3 HOH D 4 304 19 HOH HOH . K 3 HOH D 5 305 38 HOH HOH . K 3 HOH D 6 306 45 HOH HOH . K 3 HOH D 7 307 72 HOH HOH . K 3 HOH D 8 308 74 HOH HOH . K 3 HOH D 9 309 78 HOH HOH . K 3 HOH D 10 310 86 HOH HOH . K 3 HOH D 11 311 93 HOH HOH . K 3 HOH D 12 312 104 HOH HOH . K 3 HOH D 13 313 108 HOH HOH . K 3 HOH D 14 314 109 HOH HOH . K 3 HOH D 15 315 111 HOH HOH . K 3 HOH D 16 316 115 HOH HOH . K 3 HOH D 17 317 118 HOH HOH . K 3 HOH D 18 318 119 HOH HOH . K 3 HOH D 19 319 120 HOH HOH . K 3 HOH D 20 320 121 HOH HOH . K 3 HOH D 21 321 132 HOH HOH . K 3 HOH D 22 322 153 HOH HOH . K 3 HOH D 23 323 157 HOH HOH . K 3 HOH D 24 324 165 HOH HOH . K 3 HOH D 25 325 173 HOH HOH . K 3 HOH D 26 326 175 HOH HOH . K 3 HOH D 27 327 181 HOH HOH . K 3 HOH D 28 328 206 HOH HOH . K 3 HOH D 29 329 232 HOH HOH . L 3 HOH E 1 301 2 HOH HOH . L 3 HOH E 2 302 5 HOH HOH . L 3 HOH E 3 303 10 HOH HOH . L 3 HOH E 4 304 15 HOH HOH . L 3 HOH E 5 305 21 HOH HOH . L 3 HOH E 6 306 23 HOH HOH . L 3 HOH E 7 307 27 HOH HOH . L 3 HOH E 8 308 34 HOH HOH . L 3 HOH E 9 309 36 HOH HOH . L 3 HOH E 10 310 37 HOH HOH . L 3 HOH E 11 311 43 HOH HOH . L 3 HOH E 12 312 44 HOH HOH . L 3 HOH E 13 313 48 HOH HOH . L 3 HOH E 14 314 52 HOH HOH . L 3 HOH E 15 315 53 HOH HOH . L 3 HOH E 16 316 56 HOH HOH . L 3 HOH E 17 317 61 HOH HOH . L 3 HOH E 18 318 63 HOH HOH . L 3 HOH E 19 319 66 HOH HOH . L 3 HOH E 20 320 69 HOH HOH . L 3 HOH E 21 321 70 HOH HOH . L 3 HOH E 22 322 82 HOH HOH . L 3 HOH E 23 323 88 HOH HOH . L 3 HOH E 24 324 91 HOH HOH . L 3 HOH E 25 325 94 HOH HOH . L 3 HOH E 26 326 126 HOH HOH . L 3 HOH E 27 327 131 HOH HOH . L 3 HOH E 28 328 137 HOH HOH . L 3 HOH E 29 329 139 HOH HOH . L 3 HOH E 30 330 151 HOH HOH . L 3 HOH E 31 331 152 HOH HOH . L 3 HOH E 32 332 154 HOH HOH . L 3 HOH E 33 333 166 HOH HOH . L 3 HOH E 34 334 169 HOH HOH . L 3 HOH E 35 335 171 HOH HOH . L 3 HOH E 36 336 178 HOH HOH . L 3 HOH E 37 337 184 HOH HOH . L 3 HOH E 38 338 190 HOH HOH . L 3 HOH E 39 339 191 HOH HOH . L 3 HOH E 40 340 195 HOH HOH . L 3 HOH E 41 341 197 HOH HOH . L 3 HOH E 42 342 199 HOH HOH . L 3 HOH E 43 343 200 HOH HOH . L 3 HOH E 44 344 201 HOH HOH . L 3 HOH E 45 345 214 HOH HOH . L 3 HOH E 46 346 215 HOH HOH . L 3 HOH E 47 347 222 HOH HOH . M 3 HOH F 1 301 3 HOH HOH . M 3 HOH F 2 302 4 HOH HOH . M 3 HOH F 3 303 6 HOH HOH . M 3 HOH F 4 304 13 HOH HOH . M 3 HOH F 5 305 18 HOH HOH . M 3 HOH F 6 306 28 HOH HOH . M 3 HOH F 7 307 31 HOH HOH . M 3 HOH F 8 308 42 HOH HOH . M 3 HOH F 9 309 58 HOH HOH . M 3 HOH F 10 310 62 HOH HOH . M 3 HOH F 11 311 67 HOH HOH . M 3 HOH F 12 312 71 HOH HOH . M 3 HOH F 13 313 90 HOH HOH . M 3 HOH F 14 314 98 HOH HOH . M 3 HOH F 15 315 101 HOH HOH . M 3 HOH F 16 316 125 HOH HOH . M 3 HOH F 17 317 127 HOH HOH . M 3 HOH F 18 318 129 HOH HOH . M 3 HOH F 19 319 136 HOH HOH . M 3 HOH F 20 320 138 HOH HOH . M 3 HOH F 21 321 140 HOH HOH . M 3 HOH F 22 322 143 HOH HOH . M 3 HOH F 23 323 146 HOH HOH . M 3 HOH F 24 324 149 HOH HOH . M 3 HOH F 25 325 150 HOH HOH . M 3 HOH F 26 326 155 HOH HOH . M 3 HOH F 27 327 156 HOH HOH . M 3 HOH F 28 328 159 HOH HOH . M 3 HOH F 29 329 162 HOH HOH . M 3 HOH F 30 330 163 HOH HOH . M 3 HOH F 31 331 179 HOH HOH . M 3 HOH F 32 332 185 HOH HOH . M 3 HOH F 33 333 186 HOH HOH . M 3 HOH F 34 334 189 HOH HOH . M 3 HOH F 35 335 203 HOH HOH . M 3 HOH F 36 336 207 HOH HOH . M 3 HOH F 37 337 211 HOH HOH . M 3 HOH F 38 338 216 HOH HOH . M 3 HOH F 39 339 221 HOH HOH . M 3 HOH F 40 340 223 HOH HOH . M 3 HOH F 41 341 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 -24.01 -51.339 2.773 1 65.78 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . G 2 -24.113 -50.915 1.409 1 63.45 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . G 2 -22.537 -51.495 3.178 1 64.59 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . G 2 -22.418 -51.701 4.602 1 64.13 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . G 2 -21.76 -50.261 2.698 1 62.03 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . G 2 -20.577 -50.013 3.474 1 57.19 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 6 #