data_4O9B # _model_server_result.job_id nWweA_Try12ieBa230jbBA _model_server_result.datetime_utc '2024-12-21 13:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4O9B # _exptl.entry_id 4O9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O9B _cell.length_a 101.852 _cell.length_b 101.852 _cell.length_c 104.565 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,K 1 1 B,C,E,F,I,J 2 1 A,H 3 1 B,E,I 3 2 D,G,K 4 1 C,F,J 4 3 C,F,J 5 2 B,E,I 5 3 A,D,G,H,K 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_664 -y+1,x-y+1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 50.926 88.206419 -34.855 3 'crystal symmetry operation' 5_445 x-y-1,-y-1,-z+1/3 1 0 0 0 -1 0 0 0 -1 -50.926 -88.206419 34.855 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE1 GLU 74 B GLU 310 1_555 E CD CD . B CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc2 B OE2 GLU 74 B GLU 310 1_555 E CD CD . B CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc3 E CD CD . B CD 401 1_555 C OE1 GLU 74 C GLU 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc4 C OE1 GLU 66 C GLU 302 1_555 F CD CD . C CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 C OE2 GLU 66 C GLU 302 1_555 F CD CD . C CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O9B _atom_sites.fract_transf_matrix[1][1] 0.009818 _atom_sites.fract_transf_matrix[1][2] 0.005669 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CD B 1 401 1 CD CD . F 2 CD C 1 401 2 CD CD . G 2 CD D 1 401 3 CD CD . H 3 HOH A 1 401 23 HOH HOH . H 3 HOH A 2 402 24 HOH HOH . H 3 HOH A 3 403 32 HOH HOH . H 3 HOH A 4 404 33 HOH HOH . H 3 HOH A 5 405 34 HOH HOH . H 3 HOH A 6 406 50 HOH HOH . H 3 HOH A 7 407 51 HOH HOH . H 3 HOH A 8 408 52 HOH HOH . H 3 HOH A 9 409 53 HOH HOH . H 3 HOH A 10 410 55 HOH HOH . H 3 HOH A 11 411 57 HOH HOH . H 3 HOH A 12 412 58 HOH HOH . H 3 HOH A 13 413 59 HOH HOH . I 3 HOH B 1 501 8 HOH HOH . I 3 HOH B 2 502 13 HOH HOH . I 3 HOH B 3 503 14 HOH HOH . I 3 HOH B 4 504 15 HOH HOH . I 3 HOH B 5 505 25 HOH HOH . I 3 HOH B 6 506 26 HOH HOH . I 3 HOH B 7 507 27 HOH HOH . I 3 HOH B 8 508 35 HOH HOH . I 3 HOH B 9 509 36 HOH HOH . I 3 HOH B 10 510 37 HOH HOH . I 3 HOH B 11 511 38 HOH HOH . I 3 HOH B 12 512 39 HOH HOH . I 3 HOH B 13 513 62 HOH HOH . J 3 HOH C 1 501 1 HOH HOH . J 3 HOH C 2 502 2 HOH HOH . J 3 HOH C 3 503 9 HOH HOH . J 3 HOH C 4 504 10 HOH HOH . J 3 HOH C 5 505 11 HOH HOH . J 3 HOH C 6 506 12 HOH HOH . J 3 HOH C 7 507 16 HOH HOH . J 3 HOH C 8 508 17 HOH HOH . J 3 HOH C 9 509 18 HOH HOH . J 3 HOH C 10 510 19 HOH HOH . J 3 HOH C 11 511 40 HOH HOH . J 3 HOH C 12 512 41 HOH HOH . J 3 HOH C 13 513 42 HOH HOH . J 3 HOH C 14 514 43 HOH HOH . J 3 HOH C 15 515 44 HOH HOH . J 3 HOH C 16 516 45 HOH HOH . J 3 HOH C 17 517 46 HOH HOH . J 3 HOH C 18 518 60 HOH HOH . J 3 HOH C 19 519 61 HOH HOH . K 3 HOH D 1 501 3 HOH HOH . K 3 HOH D 2 502 4 HOH HOH . K 3 HOH D 3 503 5 HOH HOH . K 3 HOH D 4 504 6 HOH HOH . K 3 HOH D 5 505 7 HOH HOH . K 3 HOH D 6 506 20 HOH HOH . K 3 HOH D 7 507 21 HOH HOH . K 3 HOH D 8 508 22 HOH HOH . K 3 HOH D 9 509 28 HOH HOH . K 3 HOH D 10 510 29 HOH HOH . K 3 HOH D 11 511 30 HOH HOH . K 3 HOH D 12 512 31 HOH HOH . K 3 HOH D 13 513 47 HOH HOH . K 3 HOH D 14 514 48 HOH HOH . K 3 HOH D 15 515 49 HOH HOH . K 3 HOH D 16 516 54 HOH HOH . K 3 HOH D 17 517 56 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x -40.299 _atom_site.Cartn_y -53.372 _atom_site.Cartn_z 1.51 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 107.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 401 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #