data_4O9E
#
_model_server_result.job_id            AKABSfiBIcEuOBei4x0Z0Q 
_model_server_result.datetime_utc      '2024-11-26 18:29:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o9e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4O9E 
#
_exptl.entry_id    4O9E 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              126.113 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            THYMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4O9E 
_cell.length_a            95.788 
_cell.length_b            95.788 
_cell.length_c            94.679 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O9E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H6 N2 O2' 
_chem_comp.formula_weight    126.113 
_chem_comp.id                TDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              THYMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 TDR sing 350 n n 
N1 C6 TDR sing 351 n n 
N1 HN1 TDR sing 352 n n 
C2 O2 TDR doub 353 n n 
C2 N3 TDR sing 354 n n 
N3 C4 TDR sing 355 n n 
N3 HN3 TDR sing 356 n n 
C4 O4 TDR doub 357 n n 
C4 C5 TDR sing 358 n n 
C5 CM5 TDR sing 359 n n 
C5 C6 TDR doub 360 n n 
CM5 H5M1 TDR sing 361 n n 
CM5 H5M2 TDR sing 362 n n 
CM5 H5M3 TDR sing 363 n n 
C6 H6 TDR sing 364 n n 
#
_atom_sites.entry_id                     4O9E 
_atom_sites.fract_transf_matrix[1][1]    0.01044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010562 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TYD A 1 201 1 TYD TYD . 
D 3 TDR A 1 202 1 TDR TDR . 
E 2 TYD B 1 201 1 TYD TYD . 
F 4 4TD B 1 202 1 4TD X21 . 
G 5 HOH A 1 301 2 HOH HOH . 
G 5 HOH A 2 302 3 HOH HOH . 
G 5 HOH A 3 303 4 HOH HOH . 
G 5 HOH A 4 304 8 HOH HOH . 
G 5 HOH A 5 305 9 HOH HOH . 
G 5 HOH A 6 306 10 HOH HOH . 
G 5 HOH A 7 307 16 HOH HOH . 
G 5 HOH A 8 308 17 HOH HOH . 
G 5 HOH A 9 309 20 HOH HOH . 
G 5 HOH A 10 310 25 HOH HOH . 
G 5 HOH A 11 311 27 HOH HOH . 
G 5 HOH A 12 312 28 HOH HOH . 
G 5 HOH A 13 313 29 HOH HOH . 
G 5 HOH A 14 314 33 HOH HOH . 
G 5 HOH A 15 315 34 HOH HOH . 
G 5 HOH A 16 316 36 HOH HOH . 
G 5 HOH A 17 317 40 HOH HOH . 
G 5 HOH A 18 318 48 HOH HOH . 
G 5 HOH A 19 319 49 HOH HOH . 
G 5 HOH A 20 320 55 HOH HOH . 
G 5 HOH A 21 321 58 HOH HOH . 
G 5 HOH A 22 322 76 HOH HOH . 
G 5 HOH A 23 323 100 HOH HOH . 
G 5 HOH A 24 324 121 HOH HOH . 
G 5 HOH A 25 325 122 HOH HOH . 
G 5 HOH A 26 326 123 HOH HOH . 
G 5 HOH A 27 327 127 HOH HOH . 
G 5 HOH A 28 328 128 HOH HOH . 
G 5 HOH A 29 329 129 HOH HOH . 
G 5 HOH A 30 330 130 HOH HOH . 
G 5 HOH A 31 331 131 HOH HOH . 
G 5 HOH A 32 332 141 HOH HOH . 
G 5 HOH A 33 333 142 HOH HOH . 
G 5 HOH A 34 334 143 HOH HOH . 
G 5 HOH A 35 335 144 HOH HOH . 
G 5 HOH A 36 336 145 HOH HOH . 
G 5 HOH A 37 337 146 HOH HOH . 
G 5 HOH A 38 338 147 HOH HOH . 
G 5 HOH A 39 339 148 HOH HOH . 
G 5 HOH A 40 340 150 HOH HOH . 
G 5 HOH A 41 341 152 HOH HOH . 
G 5 HOH A 42 342 153 HOH HOH . 
G 5 HOH A 43 343 154 HOH HOH . 
G 5 HOH A 44 344 155 HOH HOH . 
G 5 HOH A 45 345 156 HOH HOH . 
G 5 HOH A 46 346 158 HOH HOH . 
G 5 HOH A 47 347 159 HOH HOH . 
G 5 HOH A 48 348 160 HOH HOH . 
G 5 HOH A 49 349 161 HOH HOH . 
G 5 HOH A 50 350 162 HOH HOH . 
G 5 HOH A 51 351 163 HOH HOH . 
G 5 HOH A 52 352 164 HOH HOH . 
G 5 HOH A 53 353 165 HOH HOH . 
G 5 HOH A 54 354 169 HOH HOH . 
G 5 HOH A 55 355 170 HOH HOH . 
G 5 HOH A 56 356 171 HOH HOH . 
G 5 HOH A 57 357 173 HOH HOH . 
G 5 HOH A 58 358 183 HOH HOH . 
G 5 HOH A 59 359 184 HOH HOH . 
G 5 HOH A 60 360 185 HOH HOH . 
G 5 HOH A 61 361 191 HOH HOH . 
G 5 HOH A 62 362 192 HOH HOH . 
G 5 HOH A 63 363 193 HOH HOH . 
G 5 HOH A 64 364 194 HOH HOH . 
G 5 HOH A 65 365 195 HOH HOH . 
G 5 HOH A 66 366 196 HOH HOH . 
G 5 HOH A 67 367 201 HOH HOH . 
G 5 HOH A 68 368 174 HOH HOH . 
G 5 HOH A 69 369 186 HOH HOH . 
H 5 HOH B 1 301 1 HOH HOH . 
H 5 HOH B 2 302 5 HOH HOH . 
H 5 HOH B 3 303 6 HOH HOH . 
H 5 HOH B 4 304 7 HOH HOH . 
H 5 HOH B 5 305 11 HOH HOH . 
H 5 HOH B 6 306 13 HOH HOH . 
H 5 HOH B 7 307 14 HOH HOH . 
H 5 HOH B 8 308 15 HOH HOH . 
H 5 HOH B 9 309 18 HOH HOH . 
H 5 HOH B 10 310 23 HOH HOH . 
H 5 HOH B 11 311 24 HOH HOH . 
H 5 HOH B 12 312 26 HOH HOH . 
H 5 HOH B 13 313 30 HOH HOH . 
H 5 HOH B 14 314 32 HOH HOH . 
H 5 HOH B 15 315 39 HOH HOH . 
H 5 HOH B 16 316 45 HOH HOH . 
H 5 HOH B 17 317 46 HOH HOH . 
H 5 HOH B 18 318 52 HOH HOH . 
H 5 HOH B 19 319 57 HOH HOH . 
H 5 HOH B 20 320 124 HOH HOH . 
H 5 HOH B 21 321 125 HOH HOH . 
H 5 HOH B 22 322 126 HOH HOH . 
H 5 HOH B 23 323 132 HOH HOH . 
H 5 HOH B 24 324 133 HOH HOH . 
H 5 HOH B 25 325 134 HOH HOH . 
H 5 HOH B 26 326 135 HOH HOH . 
H 5 HOH B 27 327 136 HOH HOH . 
H 5 HOH B 28 328 137 HOH HOH . 
H 5 HOH B 29 329 138 HOH HOH . 
H 5 HOH B 30 330 139 HOH HOH . 
H 5 HOH B 31 331 140 HOH HOH . 
H 5 HOH B 32 332 149 HOH HOH . 
H 5 HOH B 33 333 151 HOH HOH . 
H 5 HOH B 34 334 157 HOH HOH . 
H 5 HOH B 35 335 172 HOH HOH . 
H 5 HOH B 36 336 175 HOH HOH . 
H 5 HOH B 37 337 176 HOH HOH . 
H 5 HOH B 38 338 177 HOH HOH . 
H 5 HOH B 39 339 178 HOH HOH . 
H 5 HOH B 40 340 179 HOH HOH . 
H 5 HOH B 41 341 180 HOH HOH . 
H 5 HOH B 42 342 181 HOH HOH . 
H 5 HOH B 43 343 182 HOH HOH . 
H 5 HOH B 44 344 187 HOH HOH . 
H 5 HOH B 45 345 188 HOH HOH . 
H 5 HOH B 46 346 189 HOH HOH . 
H 5 HOH B 47 347 190 HOH HOH . 
H 5 HOH B 48 348 197 HOH HOH . 
H 5 HOH B 49 349 198 HOH HOH . 
H 5 HOH B 50 350 199 HOH HOH . 
H 5 HOH B 51 351 200 HOH HOH . 
H 5 HOH B 52 352 202 HOH HOH . 
H 5 HOH B 53 353 203 HOH HOH . 
H 5 HOH B 54 354 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 TDR . . . D 3 -14.858 -15.493 -45.927 1 86.31 ? N1 TDR 202 A 1 
HETATM 2 C C2 TDR . . . D 3 -13.858 -15.797 -45.098 1 83.06 ? C2 TDR 202 A 1 
HETATM 3 O O2 TDR . . . D 3 -12.773 -16.223 -45.552 1 78.75 ? O2 TDR 202 A 1 
HETATM 4 N N3 TDR . . . D 3 -14.027 -15.647 -43.782 1 87.99 ? N3 TDR 202 A 1 
HETATM 5 C C4 TDR . . . D 3 -15.176 -15.189 -43.275 1 84.66 ? C4 TDR 202 A 1 
HETATM 6 O O4 TDR . . . D 3 -15.197 -15.091 -42.029 1 83.69 ? O4 TDR 202 A 1 
HETATM 7 C C5 TDR . . . D 3 -16.313 -14.847 -44.181 1 80.87 ? C5 TDR 202 A 1 
HETATM 8 C CM5 TDR . . . D 3 -17.69 -14.324 -43.862 1 73.99 ? CM5 TDR 202 A 1 
HETATM 9 C C6 TDR . . . D 3 -16.052 -15.037 -45.527 1 87.67 ? C6 TDR 202 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#