data_4O9E # _model_server_result.job_id zHCfFx_vDSDyUhqTpqkhtw _model_server_result.datetime_utc '2024-10-12 21:16:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 4O9E # _exptl.entry_id 4O9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.463 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-1-[3-[(2S)-2-oxidanylpropoxy]-2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2R)-2-oxidanylpropoxy]methyl]propoxy]propan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O9E _cell.length_a 95.788 _cell.length_b 95.788 _cell.length_c 94.679 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H36 O8' _chem_comp.formula_weight 368.463 _chem_comp.id 4TD _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-1-[3-[(2S)-2-oxidanylpropoxy]-2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2R)-2-oxidanylpropoxy]methyl]propoxy]propan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'tetraerythritol propoxylate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C11 4TD sing 1 n n C11 C12 4TD sing 2 n n C11 C10 4TD sing 3 n n C10 O9 4TD sing 4 n n O9 C8 4TD sing 5 n n C8 C1 4TD sing 6 n n C24 C23 4TD sing 7 n n O25 C23 4TD sing 8 n n C14 C1 4TD sing 9 n n C14 O15 4TD sing 10 n n C16 O15 4TD sing 11 n n C16 C17 4TD sing 12 n n C23 C22 4TD sing 13 n n C22 O21 4TD sing 14 n n C1 C20 4TD sing 15 n n C1 C2 4TD sing 16 n n O19 C17 4TD sing 17 n n O21 C20 4TD sing 18 n n C17 C18 4TD sing 19 n n C2 O3 4TD sing 20 n n C6 C5 4TD sing 21 n n O3 C4 4TD sing 22 n n C4 C5 4TD sing 23 n n C5 O7 4TD sing 24 n n C2 H1 4TD sing 25 n n C2 H2 4TD sing 26 n n C4 H3 4TD sing 27 n n C4 H4 4TD sing 28 n n C5 H5 4TD sing 29 n n C6 H6 4TD sing 30 n n C6 H7 4TD sing 31 n n C6 H8 4TD sing 32 n n C8 H9 4TD sing 33 n n C8 H10 4TD sing 34 n n C10 H11 4TD sing 35 n n C10 H12 4TD sing 36 n n C11 H13 4TD sing 37 n n C12 H14 4TD sing 38 n n C12 H15 4TD sing 39 n n C12 H16 4TD sing 40 n n C14 H17 4TD sing 41 n n C14 H18 4TD sing 42 n n C16 H19 4TD sing 43 n n C16 H20 4TD sing 44 n n C17 H21 4TD sing 45 n n C18 H22 4TD sing 46 n n C18 H23 4TD sing 47 n n C18 H24 4TD sing 48 n n C20 H25 4TD sing 49 n n C20 H26 4TD sing 50 n n C22 H27 4TD sing 51 n n C22 H28 4TD sing 52 n n C23 H29 4TD sing 53 n n C24 H30 4TD sing 54 n n C24 H31 4TD sing 55 n n C24 H32 4TD sing 56 n n O25 H33 4TD sing 57 n n O19 H34 4TD sing 58 n n O13 H35 4TD sing 59 n n O7 H36 4TD sing 60 n n # _atom_sites.entry_id 4O9E _atom_sites.fract_transf_matrix[1][1] 0.01044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TYD A 1 201 1 TYD TYD . D 3 TDR A 1 202 1 TDR TDR . E 2 TYD B 1 201 1 TYD TYD . F 4 4TD B 1 202 1 4TD X21 . G 5 HOH A 1 301 2 HOH HOH . G 5 HOH A 2 302 3 HOH HOH . G 5 HOH A 3 303 4 HOH HOH . G 5 HOH A 4 304 8 HOH HOH . G 5 HOH A 5 305 9 HOH HOH . G 5 HOH A 6 306 10 HOH HOH . G 5 HOH A 7 307 16 HOH HOH . G 5 HOH A 8 308 17 HOH HOH . G 5 HOH A 9 309 20 HOH HOH . G 5 HOH A 10 310 25 HOH HOH . G 5 HOH A 11 311 27 HOH HOH . G 5 HOH A 12 312 28 HOH HOH . G 5 HOH A 13 313 29 HOH HOH . G 5 HOH A 14 314 33 HOH HOH . G 5 HOH A 15 315 34 HOH HOH . G 5 HOH A 16 316 36 HOH HOH . G 5 HOH A 17 317 40 HOH HOH . G 5 HOH A 18 318 48 HOH HOH . G 5 HOH A 19 319 49 HOH HOH . G 5 HOH A 20 320 55 HOH HOH . G 5 HOH A 21 321 58 HOH HOH . G 5 HOH A 22 322 76 HOH HOH . G 5 HOH A 23 323 100 HOH HOH . G 5 HOH A 24 324 121 HOH HOH . G 5 HOH A 25 325 122 HOH HOH . G 5 HOH A 26 326 123 HOH HOH . G 5 HOH A 27 327 127 HOH HOH . G 5 HOH A 28 328 128 HOH HOH . G 5 HOH A 29 329 129 HOH HOH . G 5 HOH A 30 330 130 HOH HOH . G 5 HOH A 31 331 131 HOH HOH . G 5 HOH A 32 332 141 HOH HOH . G 5 HOH A 33 333 142 HOH HOH . G 5 HOH A 34 334 143 HOH HOH . G 5 HOH A 35 335 144 HOH HOH . G 5 HOH A 36 336 145 HOH HOH . G 5 HOH A 37 337 146 HOH HOH . G 5 HOH A 38 338 147 HOH HOH . G 5 HOH A 39 339 148 HOH HOH . G 5 HOH A 40 340 150 HOH HOH . G 5 HOH A 41 341 152 HOH HOH . G 5 HOH A 42 342 153 HOH HOH . G 5 HOH A 43 343 154 HOH HOH . G 5 HOH A 44 344 155 HOH HOH . G 5 HOH A 45 345 156 HOH HOH . G 5 HOH A 46 346 158 HOH HOH . G 5 HOH A 47 347 159 HOH HOH . G 5 HOH A 48 348 160 HOH HOH . G 5 HOH A 49 349 161 HOH HOH . G 5 HOH A 50 350 162 HOH HOH . G 5 HOH A 51 351 163 HOH HOH . G 5 HOH A 52 352 164 HOH HOH . G 5 HOH A 53 353 165 HOH HOH . G 5 HOH A 54 354 169 HOH HOH . G 5 HOH A 55 355 170 HOH HOH . G 5 HOH A 56 356 171 HOH HOH . G 5 HOH A 57 357 173 HOH HOH . G 5 HOH A 58 358 183 HOH HOH . G 5 HOH A 59 359 184 HOH HOH . G 5 HOH A 60 360 185 HOH HOH . G 5 HOH A 61 361 191 HOH HOH . G 5 HOH A 62 362 192 HOH HOH . G 5 HOH A 63 363 193 HOH HOH . G 5 HOH A 64 364 194 HOH HOH . G 5 HOH A 65 365 195 HOH HOH . G 5 HOH A 66 366 196 HOH HOH . G 5 HOH A 67 367 201 HOH HOH . G 5 HOH A 68 368 174 HOH HOH . G 5 HOH A 69 369 186 HOH HOH . H 5 HOH B 1 301 1 HOH HOH . H 5 HOH B 2 302 5 HOH HOH . H 5 HOH B 3 303 6 HOH HOH . H 5 HOH B 4 304 7 HOH HOH . H 5 HOH B 5 305 11 HOH HOH . H 5 HOH B 6 306 13 HOH HOH . H 5 HOH B 7 307 14 HOH HOH . H 5 HOH B 8 308 15 HOH HOH . H 5 HOH B 9 309 18 HOH HOH . H 5 HOH B 10 310 23 HOH HOH . H 5 HOH B 11 311 24 HOH HOH . H 5 HOH B 12 312 26 HOH HOH . H 5 HOH B 13 313 30 HOH HOH . H 5 HOH B 14 314 32 HOH HOH . H 5 HOH B 15 315 39 HOH HOH . H 5 HOH B 16 316 45 HOH HOH . H 5 HOH B 17 317 46 HOH HOH . H 5 HOH B 18 318 52 HOH HOH . H 5 HOH B 19 319 57 HOH HOH . H 5 HOH B 20 320 124 HOH HOH . H 5 HOH B 21 321 125 HOH HOH . H 5 HOH B 22 322 126 HOH HOH . H 5 HOH B 23 323 132 HOH HOH . H 5 HOH B 24 324 133 HOH HOH . H 5 HOH B 25 325 134 HOH HOH . H 5 HOH B 26 326 135 HOH HOH . H 5 HOH B 27 327 136 HOH HOH . H 5 HOH B 28 328 137 HOH HOH . H 5 HOH B 29 329 138 HOH HOH . H 5 HOH B 30 330 139 HOH HOH . H 5 HOH B 31 331 140 HOH HOH . H 5 HOH B 32 332 149 HOH HOH . H 5 HOH B 33 333 151 HOH HOH . H 5 HOH B 34 334 157 HOH HOH . H 5 HOH B 35 335 172 HOH HOH . H 5 HOH B 36 336 175 HOH HOH . H 5 HOH B 37 337 176 HOH HOH . H 5 HOH B 38 338 177 HOH HOH . H 5 HOH B 39 339 178 HOH HOH . H 5 HOH B 40 340 179 HOH HOH . H 5 HOH B 41 341 180 HOH HOH . H 5 HOH B 42 342 181 HOH HOH . H 5 HOH B 43 343 182 HOH HOH . H 5 HOH B 44 344 187 HOH HOH . H 5 HOH B 45 345 188 HOH HOH . H 5 HOH B 46 346 189 HOH HOH . H 5 HOH B 47 347 190 HOH HOH . H 5 HOH B 48 348 197 HOH HOH . H 5 HOH B 49 349 198 HOH HOH . H 5 HOH B 50 350 199 HOH HOH . H 5 HOH B 51 351 200 HOH HOH . H 5 HOH B 52 352 202 HOH HOH . H 5 HOH B 53 353 203 HOH HOH . H 5 HOH B 54 354 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4TD . . . F 4 19.509 -19.492 0.025 0.25 49.77 ? C1 4TD 202 B 1 HETATM 2 C C2 4TD . . . F 4 20.628 -19.245 1.033 0.5 47.11 ? C2 4TD 202 B 1 HETATM 3 C C4 4TD . . . F 4 21.914 -20.684 2.549 0.5 46.37 ? C4 4TD 202 B 1 HETATM 4 C C5 4TD . . . F 4 21.77 -22.175 2.829 0.5 47.12 ? C5 4TD 202 B 1 HETATM 5 C C6 4TD . . . F 4 21.035 -22.945 1.741 0.5 49.66 ? C6 4TD 202 B 1 HETATM 6 C C8 4TD . . . F 4 19.922 -20.648 -0.909 0.5 48.63 ? C8 4TD 202 B 1 HETATM 7 C C10 4TD . . . F 4 21.649 -21.847 -2.155 0.5 49.18 ? C10 4TD 202 B 1 HETATM 8 C C11 4TD . . . F 4 22.661 -21.84 -3.303 0.5 50.38 ? C11 4TD 202 B 1 HETATM 9 C C12 4TD . . . F 4 24.141 -21.833 -2.917 0.5 51.36 ? C12 4TD 202 B 1 HETATM 10 C C14 4TD . . . F 4 19.029 -18.136 -0.528 0.5 50.9 ? C14 4TD 202 B 1 HETATM 11 C C16 4TD . . . F 4 18.388 -15.758 -0.19 0.5 59.88 ? C16 4TD 202 B 1 HETATM 12 C C17 4TD . . . F 4 18.428 -14.49 0.67 0.5 58.52 ? C17 4TD 202 B 1 HETATM 13 C C18 4TD . . . F 4 17.178 -13.608 0.742 0.5 60.91 ? C18 4TD 202 B 1 HETATM 14 C C20 4TD . . . F 4 18.335 -20.19 0.707 0.5 55.09 ? C20 4TD 202 B 1 HETATM 15 C C22 4TD . . . F 4 15.998 -20.202 -0.071 0.5 59.66 ? C22 4TD 202 B 1 HETATM 16 C C23 4TD . . . F 4 14.906 -19.136 -0.088 0.5 60.16 ? C23 4TD 202 B 1 HETATM 17 C C24 4TD . . . F 4 15.333 -17.847 -0.785 0.5 64.08 ? C24 4TD 202 B 1 HETATM 18 O O25 4TD . . . F 4 13.742 -19.689 -0.707 0.5 65.57 ? O25 4TD 202 B 1 HETATM 19 O O21 4TD . . . F 4 17.156 -19.476 0.343 0.5 57.83 ? O21 4TD 202 B 1 HETATM 20 O O15 4TD . . . F 4 19.046 -16.948 0.287 0.5 57.1 ? O15 4TD 202 B 1 HETATM 21 O O19 4TD . . . F 4 19.518 -13.714 0.16 0.5 61.66 ? O19 4TD 202 B 1 HETATM 22 O O9 4TD . . . F 4 20.973 -20.605 -1.889 0.5 48.9 ? O9 4TD 202 B 1 HETATM 23 O O13 4TD . . . F 4 22.377 -20.703 -4.122 0.5 52.6 ? O13 4TD 202 B 1 HETATM 24 O O3 4TD . . . F 4 20.658 -20.315 1.979 0.5 49.54 ? O3 4TD 202 B 1 HETATM 25 O O7 4TD . . . F 4 20.993 -22.306 4.019 0.5 43.62 ? O7 4TD 202 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #