data_4O9G # _model_server_result.job_id bYyRcq6UEqZYcgq80RtVzw _model_server_result.datetime_utc '2024-10-12 23:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 4O9G # _exptl.entry_id 4O9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.463 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-1-[3-[(2S)-2-oxidanylpropoxy]-2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2R)-2-oxidanylpropoxy]methyl]propoxy]propan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O9G _cell.length_a 95.396 _cell.length_b 95.396 _cell.length_c 94.643 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H36 O8' _chem_comp.formula_weight 368.463 _chem_comp.id 4TD _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-1-[3-[(2S)-2-oxidanylpropoxy]-2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2R)-2-oxidanylpropoxy]methyl]propoxy]propan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'tetraerythritol propoxylate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C11 4TD sing 1 n n C11 C12 4TD sing 2 n n C11 C10 4TD sing 3 n n C10 O9 4TD sing 4 n n O9 C8 4TD sing 5 n n C8 C1 4TD sing 6 n n C24 C23 4TD sing 7 n n O25 C23 4TD sing 8 n n C14 C1 4TD sing 9 n n C14 O15 4TD sing 10 n n C16 O15 4TD sing 11 n n C16 C17 4TD sing 12 n n C23 C22 4TD sing 13 n n C22 O21 4TD sing 14 n n C1 C20 4TD sing 15 n n C1 C2 4TD sing 16 n n O19 C17 4TD sing 17 n n O21 C20 4TD sing 18 n n C17 C18 4TD sing 19 n n C2 O3 4TD sing 20 n n C6 C5 4TD sing 21 n n O3 C4 4TD sing 22 n n C4 C5 4TD sing 23 n n C5 O7 4TD sing 24 n n C2 H1 4TD sing 25 n n C2 H2 4TD sing 26 n n C4 H3 4TD sing 27 n n C4 H4 4TD sing 28 n n C5 H5 4TD sing 29 n n C6 H6 4TD sing 30 n n C6 H7 4TD sing 31 n n C6 H8 4TD sing 32 n n C8 H9 4TD sing 33 n n C8 H10 4TD sing 34 n n C10 H11 4TD sing 35 n n C10 H12 4TD sing 36 n n C11 H13 4TD sing 37 n n C12 H14 4TD sing 38 n n C12 H15 4TD sing 39 n n C12 H16 4TD sing 40 n n C14 H17 4TD sing 41 n n C14 H18 4TD sing 42 n n C16 H19 4TD sing 43 n n C16 H20 4TD sing 44 n n C17 H21 4TD sing 45 n n C18 H22 4TD sing 46 n n C18 H23 4TD sing 47 n n C18 H24 4TD sing 48 n n C20 H25 4TD sing 49 n n C20 H26 4TD sing 50 n n C22 H27 4TD sing 51 n n C22 H28 4TD sing 52 n n C23 H29 4TD sing 53 n n C24 H30 4TD sing 54 n n C24 H31 4TD sing 55 n n C24 H32 4TD sing 56 n n O25 H33 4TD sing 57 n n O19 H34 4TD sing 58 n n O13 H35 4TD sing 59 n n O7 H36 4TD sing 60 n n # _atom_sites.entry_id 4O9G _atom_sites.fract_transf_matrix[1][1] 0.010483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 T46 A 1 201 1 T46 LIG . D 2 T46 B 1 201 2 T46 LIG . E 3 EDO B 1 202 1 EDO EDO . F 4 4TD B 1 203 1 4TD X21 . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 2 HOH HOH . G 5 HOH A 3 303 3 HOH HOH . G 5 HOH A 4 304 4 HOH HOH . G 5 HOH A 5 305 8 HOH HOH . G 5 HOH A 6 306 10 HOH HOH . G 5 HOH A 7 307 12 HOH HOH . G 5 HOH A 8 308 13 HOH HOH . G 5 HOH A 9 309 14 HOH HOH . G 5 HOH A 10 310 15 HOH HOH . G 5 HOH A 11 311 16 HOH HOH . G 5 HOH A 12 312 17 HOH HOH . G 5 HOH A 13 313 18 HOH HOH . G 5 HOH A 14 314 20 HOH HOH . G 5 HOH A 15 315 21 HOH HOH . G 5 HOH A 16 316 23 HOH HOH . G 5 HOH A 17 317 24 HOH HOH . G 5 HOH A 18 318 26 HOH HOH . G 5 HOH A 19 319 28 HOH HOH . G 5 HOH A 20 320 29 HOH HOH . G 5 HOH A 21 321 32 HOH HOH . G 5 HOH A 22 322 33 HOH HOH . G 5 HOH A 23 323 34 HOH HOH . G 5 HOH A 24 324 35 HOH HOH . G 5 HOH A 25 325 36 HOH HOH . G 5 HOH A 26 326 37 HOH HOH . G 5 HOH A 27 327 38 HOH HOH . G 5 HOH A 28 328 39 HOH HOH . G 5 HOH A 29 329 42 HOH HOH . G 5 HOH A 30 330 43 HOH HOH . G 5 HOH A 31 331 44 HOH HOH . G 5 HOH A 32 332 45 HOH HOH . G 5 HOH A 33 333 46 HOH HOH . G 5 HOH A 34 334 47 HOH HOH . G 5 HOH A 35 335 48 HOH HOH . G 5 HOH A 36 336 49 HOH HOH . G 5 HOH A 37 337 50 HOH HOH . G 5 HOH A 38 338 51 HOH HOH . G 5 HOH A 39 339 52 HOH HOH . G 5 HOH A 40 340 54 HOH HOH . G 5 HOH A 41 341 56 HOH HOH . G 5 HOH A 42 342 57 HOH HOH . G 5 HOH A 43 343 69 HOH HOH . G 5 HOH A 44 344 83 HOH HOH . G 5 HOH A 45 345 84 HOH HOH . G 5 HOH A 46 346 85 HOH HOH . G 5 HOH A 47 347 86 HOH HOH . G 5 HOH A 48 348 88 HOH HOH . G 5 HOH A 49 349 89 HOH HOH . G 5 HOH A 50 350 90 HOH HOH . G 5 HOH A 51 351 91 HOH HOH . G 5 HOH A 52 352 96 HOH HOH . G 5 HOH A 53 353 97 HOH HOH . G 5 HOH A 54 354 98 HOH HOH . G 5 HOH A 55 355 99 HOH HOH . G 5 HOH A 56 356 100 HOH HOH . G 5 HOH A 57 357 101 HOH HOH . G 5 HOH A 58 358 104 HOH HOH . G 5 HOH A 59 359 105 HOH HOH . G 5 HOH A 60 360 106 HOH HOH . G 5 HOH A 61 361 107 HOH HOH . G 5 HOH A 62 362 108 HOH HOH . G 5 HOH A 63 363 109 HOH HOH . G 5 HOH A 64 364 110 HOH HOH . G 5 HOH A 65 365 111 HOH HOH . G 5 HOH A 66 366 112 HOH HOH . G 5 HOH A 67 367 117 HOH HOH . G 5 HOH A 68 368 119 HOH HOH . G 5 HOH A 69 369 120 HOH HOH . G 5 HOH A 70 370 121 HOH HOH . G 5 HOH A 71 371 122 HOH HOH . G 5 HOH A 72 372 123 HOH HOH . G 5 HOH A 73 373 124 HOH HOH . G 5 HOH A 74 374 125 HOH HOH . G 5 HOH A 75 375 127 HOH HOH . G 5 HOH A 76 376 128 HOH HOH . G 5 HOH A 77 377 129 HOH HOH . G 5 HOH A 78 378 139 HOH HOH . G 5 HOH A 79 379 146 HOH HOH . G 5 HOH A 80 380 161 HOH HOH . G 5 HOH A 81 381 162 HOH HOH . G 5 HOH A 82 382 164 HOH HOH . G 5 HOH A 83 383 165 HOH HOH . G 5 HOH A 84 384 166 HOH HOH . G 5 HOH A 85 385 168 HOH HOH . G 5 HOH A 86 386 169 HOH HOH . G 5 HOH A 87 387 173 HOH HOH . G 5 HOH A 88 388 174 HOH HOH . G 5 HOH A 89 389 175 HOH HOH . G 5 HOH A 90 390 176 HOH HOH . G 5 HOH A 91 391 177 HOH HOH . G 5 HOH A 92 392 179 HOH HOH . G 5 HOH A 93 393 182 HOH HOH . G 5 HOH A 94 394 5 HOH HOH . G 5 HOH A 95 395 134 HOH HOH . G 5 HOH A 96 396 135 HOH HOH . H 5 HOH B 1 301 6 HOH HOH . H 5 HOH B 2 302 9 HOH HOH . H 5 HOH B 3 303 11 HOH HOH . H 5 HOH B 4 304 19 HOH HOH . H 5 HOH B 5 305 22 HOH HOH . H 5 HOH B 6 306 25 HOH HOH . H 5 HOH B 7 307 27 HOH HOH . H 5 HOH B 8 308 31 HOH HOH . H 5 HOH B 9 309 40 HOH HOH . H 5 HOH B 10 310 41 HOH HOH . H 5 HOH B 11 311 53 HOH HOH . H 5 HOH B 12 312 58 HOH HOH . H 5 HOH B 13 313 59 HOH HOH . H 5 HOH B 14 314 60 HOH HOH . H 5 HOH B 15 315 61 HOH HOH . H 5 HOH B 16 316 62 HOH HOH . H 5 HOH B 17 317 63 HOH HOH . H 5 HOH B 18 318 64 HOH HOH . H 5 HOH B 19 319 65 HOH HOH . H 5 HOH B 20 320 66 HOH HOH . H 5 HOH B 21 321 67 HOH HOH . H 5 HOH B 22 322 68 HOH HOH . H 5 HOH B 23 323 70 HOH HOH . H 5 HOH B 24 324 71 HOH HOH . H 5 HOH B 25 325 72 HOH HOH . H 5 HOH B 26 326 73 HOH HOH . H 5 HOH B 27 327 74 HOH HOH . H 5 HOH B 28 328 75 HOH HOH . H 5 HOH B 29 329 76 HOH HOH . H 5 HOH B 30 330 77 HOH HOH . H 5 HOH B 31 331 78 HOH HOH . H 5 HOH B 32 332 80 HOH HOH . H 5 HOH B 33 333 81 HOH HOH . H 5 HOH B 34 334 82 HOH HOH . H 5 HOH B 35 335 87 HOH HOH . H 5 HOH B 36 336 92 HOH HOH . H 5 HOH B 37 337 93 HOH HOH . H 5 HOH B 38 338 94 HOH HOH . H 5 HOH B 39 339 95 HOH HOH . H 5 HOH B 40 340 102 HOH HOH . H 5 HOH B 41 341 103 HOH HOH . H 5 HOH B 42 342 113 HOH HOH . H 5 HOH B 43 343 114 HOH HOH . H 5 HOH B 44 344 115 HOH HOH . H 5 HOH B 45 345 116 HOH HOH . H 5 HOH B 46 346 118 HOH HOH . H 5 HOH B 47 347 130 HOH HOH . H 5 HOH B 48 348 131 HOH HOH . H 5 HOH B 49 349 132 HOH HOH . H 5 HOH B 50 350 133 HOH HOH . H 5 HOH B 51 351 136 HOH HOH . H 5 HOH B 52 352 137 HOH HOH . H 5 HOH B 53 353 140 HOH HOH . H 5 HOH B 54 354 141 HOH HOH . H 5 HOH B 55 355 143 HOH HOH . H 5 HOH B 56 356 144 HOH HOH . H 5 HOH B 57 357 145 HOH HOH . H 5 HOH B 58 358 147 HOH HOH . H 5 HOH B 59 359 148 HOH HOH . H 5 HOH B 60 360 149 HOH HOH . H 5 HOH B 61 361 150 HOH HOH . H 5 HOH B 62 362 151 HOH HOH . H 5 HOH B 63 363 152 HOH HOH . H 5 HOH B 64 364 153 HOH HOH . H 5 HOH B 65 365 154 HOH HOH . H 5 HOH B 66 366 155 HOH HOH . H 5 HOH B 67 367 156 HOH HOH . H 5 HOH B 68 368 157 HOH HOH . H 5 HOH B 69 369 158 HOH HOH . H 5 HOH B 70 370 159 HOH HOH . H 5 HOH B 71 371 160 HOH HOH . H 5 HOH B 72 372 167 HOH HOH . H 5 HOH B 73 373 170 HOH HOH . H 5 HOH B 74 374 171 HOH HOH . H 5 HOH B 75 375 172 HOH HOH . H 5 HOH B 76 376 180 HOH HOH . H 5 HOH B 77 377 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4TD . . . F 4 18.12 -18.579 47.456 0.25 63.83 ? C1 4TD 203 B 1 HETATM 2 C C2 4TD . . . F 4 19.049 -17.981 48.511 0.5 65.38 ? C2 4TD 203 B 1 HETATM 3 C C4 4TD . . . F 4 20.179 -19.201 50.226 0.5 54.61 ? C4 4TD 203 B 1 HETATM 4 C C5 4TD . . . F 4 20.102 -20.7 50.466 0.5 47.94 ? C5 4TD 203 B 1 HETATM 5 C C6 4TD . . . F 4 18.822 -21.283 49.889 0.5 53.62 ? C6 4TD 203 B 1 HETATM 6 C C8 4TD . . . F 4 18.806 -19.709 46.638 0.5 63.85 ? C8 4TD 203 B 1 HETATM 7 C C10 4TD . . . F 4 20.908 -20.635 45.999 0.5 57.47 ? C10 4TD 203 B 1 HETATM 8 C C11 4TD . . . F 4 21.701 -20.866 44.708 0.5 53.15 ? C11 4TD 203 B 1 HETATM 9 C C12 4TD . . . F 4 23.213 -20.87 44.952 0.5 52.82 ? C12 4TD 203 B 1 HETATM 10 C C14 4TD . . . F 4 17.464 -17.458 46.615 0.5 62.01 ? C14 4TD 203 B 1 HETATM 11 C C16 4TD . . . F 4 16.545 -15.208 46.586 0.5 63.82 ? C16 4TD 203 B 1 HETATM 12 C C17 4TD . . . F 4 16.524 -13.838 47.282 0.5 64 ? C17 4TD 203 B 1 HETATM 13 C C18 4TD . . . F 4 15.12 -13.349 47.651 0.5 61.98 ? C18 4TD 203 B 1 HETATM 14 C C20 4TD . . . F 4 17.025 -19.324 48.219 0.5 62.62 ? C20 4TD 203 B 1 HETATM 15 C C22 4TD . . . F 4 14.89 -20.13 47.615 0.5 55.46 ? C22 4TD 203 B 1 HETATM 16 C C23 4TD . . . F 4 13.503 -19.611 47.285 0.5 51.77 ? C23 4TD 203 B 1 HETATM 17 C C24 4TD . . . F 4 13.526 -18.959 45.91 0.5 53.08 ? C24 4TD 203 B 1 HETATM 18 O O25 4TD . . . F 4 12.565 -20.685 47.326 0.5 50.97 ? O25 4TD 203 B 1 HETATM 19 O O21 4TD . . . F 4 15.744 -18.993 47.699 0.5 60.09 ? O21 4TD 203 B 1 HETATM 20 O O15 4TD . . . F 4 17.315 -16.196 47.31 0.5 60.59 ? O15 4TD 203 B 1 HETATM 21 O O19 4TD . . . F 4 17.129 -12.857 46.432 0.5 68.22 ? O19 4TD 203 B 1 HETATM 22 O O9 4TD . . . F 4 20.064 -19.463 45.974 0.5 60.16 ? O9 4TD 203 B 1 HETATM 23 O O13 4TD . . . F 4 21.336 -19.89 43.729 0.5 48.9 ? O13 4TD 203 B 1 HETATM 24 O O3 4TD . . . F 4 18.929 -18.752 49.71 0.5 64.22 ? O3 4TD 203 B 1 HETATM 25 O O7 4TD . . . F 4 20.103 -20.977 51.863 0.5 44.81 ? O7 4TD 203 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 25 #