data_4O9K # _model_server_result.job_id LNC7nTBcmkd1VU2Q6Dp6MQ _model_server_result.datetime_utc '2024-11-27 18:16:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4O9K # _exptl.entry_id 4O9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O9K _cell.length_a 45.151 _cell.length_b 62.408 _cell.length_c 75.664 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 11 A ILE 211 1_555 A N MSE 12 A MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 12 A MSE 212 1_555 A N HIS 13 A HIS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLU 33 A GLU 233 1_555 A N MSE 34 A MSE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 A C MSE 34 A MSE 234 1_555 A N THR 35 A THR 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C GLY 40 A GLY 240 1_555 A N MSE 41 A MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 A C MSE 41 A MSE 241 1_555 A N THR 42 A THR 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C VAL 78 A VAL 278 1_555 A N MSE 79 A MSE 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 79 A MSE 279 1_555 A N THR 80 A THR 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C ILE 98 A ILE 298 1_555 A N MSE 99 A MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale10 A C MSE 99 A MSE 299 1_555 A N GLU 100 A GLU 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C ASN 120 A ASN 320 1_555 A N MSE 121 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 121 A MSE 321 1_555 A N HIS 122 A HIS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale13 B C ILE 11 B ILE 211 1_555 B N MSE 12 B MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 12 B MSE 212 1_555 B N HIS 13 B HIS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale15 B C GLU 33 B GLU 234 1_555 B N MSE 34 B MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale16 B C MSE 34 B MSE 235 1_555 B N THR 35 B THR 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale17 B C GLY 40 B GLY 241 1_555 B N MSE 41 B MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 41 B MSE 242 1_555 B N THR 42 B THR 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale19 B C VAL 78 B VAL 279 1_555 B N MSE 79 B MSE 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale20 B C MSE 79 B MSE 280 1_555 B N THR 80 B THR 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale21 B C ILE 98 B ILE 299 1_555 B N MSE 99 B MSE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale22 B C MSE 99 B MSE 300 1_555 B N GLU 100 B GLU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 B C ASN 120 B ASN 321 1_555 B N MSE 121 B MSE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale24 B C MSE 121 B MSE 322 1_555 B N HIS 122 B HIS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 193 n n C1 C2 GOL sing 194 n n C1 H11 GOL sing 195 n n C1 H12 GOL sing 196 n n O1 HO1 GOL sing 197 n n C2 O2 GOL sing 198 n n C2 C3 GOL sing 199 n n C2 H2 GOL sing 200 n n O2 HO2 GOL sing 201 n n C3 O3 GOL sing 202 n n C3 H31 GOL sing 203 n n C3 H32 GOL sing 204 n n O3 HO3 GOL sing 205 n n # _atom_sites.entry_id 4O9K _atom_sites.fract_transf_matrix[1][1] 0.022148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMK A 1 401 1 CMK CMK . D 3 GOL B 1 401 1 GOL GOL . E 2 CMK B 1 402 2 CMK CMK . F 4 HOH A 1 501 2 HOH HOH . F 4 HOH A 2 502 3 HOH HOH . F 4 HOH A 3 503 5 HOH HOH . F 4 HOH A 4 504 7 HOH HOH . F 4 HOH A 5 505 8 HOH HOH . F 4 HOH A 6 506 9 HOH HOH . F 4 HOH A 7 507 10 HOH HOH . F 4 HOH A 8 508 11 HOH HOH . F 4 HOH A 9 509 13 HOH HOH . F 4 HOH A 10 510 15 HOH HOH . F 4 HOH A 11 511 18 HOH HOH . F 4 HOH A 12 512 24 HOH HOH . F 4 HOH A 13 513 26 HOH HOH . F 4 HOH A 14 514 28 HOH HOH . F 4 HOH A 15 515 29 HOH HOH . F 4 HOH A 16 516 32 HOH HOH . F 4 HOH A 17 517 33 HOH HOH . F 4 HOH A 18 518 34 HOH HOH . F 4 HOH A 19 519 39 HOH HOH . F 4 HOH A 20 520 40 HOH HOH . F 4 HOH A 21 521 41 HOH HOH . F 4 HOH A 22 522 43 HOH HOH . F 4 HOH A 23 523 45 HOH HOH . F 4 HOH A 24 524 46 HOH HOH . F 4 HOH A 25 525 48 HOH HOH . F 4 HOH A 26 526 50 HOH HOH . F 4 HOH A 27 527 54 HOH HOH . F 4 HOH A 28 528 55 HOH HOH . F 4 HOH A 29 529 57 HOH HOH . F 4 HOH A 30 530 60 HOH HOH . F 4 HOH A 31 531 61 HOH HOH . F 4 HOH A 32 532 62 HOH HOH . F 4 HOH A 33 533 63 HOH HOH . F 4 HOH A 34 534 64 HOH HOH . F 4 HOH A 35 535 65 HOH HOH . F 4 HOH A 36 536 67 HOH HOH . F 4 HOH A 37 537 71 HOH HOH . F 4 HOH A 38 538 76 HOH HOH . F 4 HOH A 39 539 80 HOH HOH . F 4 HOH A 40 540 81 HOH HOH . F 4 HOH A 41 541 83 HOH HOH . F 4 HOH A 42 542 85 HOH HOH . F 4 HOH A 43 543 88 HOH HOH . F 4 HOH A 44 544 91 HOH HOH . F 4 HOH A 45 545 92 HOH HOH . F 4 HOH A 46 546 95 HOH HOH . F 4 HOH A 47 547 96 HOH HOH . F 4 HOH A 48 548 97 HOH HOH . F 4 HOH A 49 549 99 HOH HOH . F 4 HOH A 50 550 101 HOH HOH . F 4 HOH A 51 551 106 HOH HOH . F 4 HOH A 52 552 121 HOH HOH . F 4 HOH A 53 553 123 HOH HOH . F 4 HOH A 54 554 124 HOH HOH . F 4 HOH A 55 555 125 HOH HOH . F 4 HOH A 56 556 127 HOH HOH . F 4 HOH A 57 557 129 HOH HOH . F 4 HOH A 58 558 130 HOH HOH . F 4 HOH A 59 559 134 HOH HOH . F 4 HOH A 60 560 137 HOH HOH . F 4 HOH A 61 561 138 HOH HOH . F 4 HOH A 62 562 140 HOH HOH . F 4 HOH A 63 563 141 HOH HOH . F 4 HOH A 64 564 143 HOH HOH . F 4 HOH A 65 565 146 HOH HOH . F 4 HOH A 66 566 150 HOH HOH . F 4 HOH A 67 567 151 HOH HOH . F 4 HOH A 68 568 154 HOH HOH . F 4 HOH A 69 569 155 HOH HOH . F 4 HOH A 70 570 160 HOH HOH . F 4 HOH A 71 571 163 HOH HOH . F 4 HOH A 72 572 164 HOH HOH . F 4 HOH A 73 573 165 HOH HOH . F 4 HOH A 74 574 169 HOH HOH . F 4 HOH A 75 575 170 HOH HOH . F 4 HOH A 76 576 171 HOH HOH . F 4 HOH A 77 577 183 HOH HOH . F 4 HOH A 78 578 191 HOH HOH . F 4 HOH A 79 579 192 HOH HOH . F 4 HOH A 80 580 193 HOH HOH . F 4 HOH A 81 581 194 HOH HOH . F 4 HOH A 82 582 195 HOH HOH . F 4 HOH A 83 583 197 HOH HOH . F 4 HOH A 84 584 198 HOH HOH . F 4 HOH A 85 585 203 HOH HOH . F 4 HOH A 86 586 207 HOH HOH . F 4 HOH A 87 587 216 HOH HOH . F 4 HOH A 88 588 218 HOH HOH . F 4 HOH A 89 589 219 HOH HOH . F 4 HOH A 90 590 220 HOH HOH . F 4 HOH A 91 591 221 HOH HOH . F 4 HOH A 92 592 222 HOH HOH . F 4 HOH A 93 593 223 HOH HOH . F 4 HOH A 94 594 227 HOH HOH . F 4 HOH A 95 595 229 HOH HOH . F 4 HOH A 96 596 232 HOH HOH . G 4 HOH B 1 501 1 HOH HOH . G 4 HOH B 2 502 4 HOH HOH . G 4 HOH B 3 503 6 HOH HOH . G 4 HOH B 4 504 12 HOH HOH . G 4 HOH B 5 505 14 HOH HOH . G 4 HOH B 6 506 16 HOH HOH . G 4 HOH B 7 507 17 HOH HOH . G 4 HOH B 8 508 19 HOH HOH . G 4 HOH B 9 509 20 HOH HOH . G 4 HOH B 10 510 21 HOH HOH . G 4 HOH B 11 511 22 HOH HOH . G 4 HOH B 12 512 23 HOH HOH . G 4 HOH B 13 513 25 HOH HOH . G 4 HOH B 14 514 27 HOH HOH . G 4 HOH B 15 515 30 HOH HOH . G 4 HOH B 16 516 31 HOH HOH . G 4 HOH B 17 517 35 HOH HOH . G 4 HOH B 18 518 36 HOH HOH . G 4 HOH B 19 519 37 HOH HOH . G 4 HOH B 20 520 38 HOH HOH . G 4 HOH B 21 521 42 HOH HOH . G 4 HOH B 22 522 44 HOH HOH . G 4 HOH B 23 523 47 HOH HOH . G 4 HOH B 24 524 49 HOH HOH . G 4 HOH B 25 525 51 HOH HOH . G 4 HOH B 26 526 52 HOH HOH . G 4 HOH B 27 527 53 HOH HOH . G 4 HOH B 28 528 56 HOH HOH . G 4 HOH B 29 529 58 HOH HOH . G 4 HOH B 30 530 59 HOH HOH . G 4 HOH B 31 531 66 HOH HOH . G 4 HOH B 32 532 68 HOH HOH . G 4 HOH B 33 533 69 HOH HOH . G 4 HOH B 34 534 70 HOH HOH . G 4 HOH B 35 535 73 HOH HOH . G 4 HOH B 36 536 74 HOH HOH . G 4 HOH B 37 537 75 HOH HOH . G 4 HOH B 38 538 77 HOH HOH . G 4 HOH B 39 539 78 HOH HOH . G 4 HOH B 40 540 79 HOH HOH . G 4 HOH B 41 541 82 HOH HOH . G 4 HOH B 42 542 84 HOH HOH . G 4 HOH B 43 543 87 HOH HOH . G 4 HOH B 44 544 89 HOH HOH . G 4 HOH B 45 545 90 HOH HOH . G 4 HOH B 46 546 93 HOH HOH . G 4 HOH B 47 547 94 HOH HOH . G 4 HOH B 48 548 98 HOH HOH . G 4 HOH B 49 549 100 HOH HOH . G 4 HOH B 50 550 102 HOH HOH . G 4 HOH B 51 551 103 HOH HOH . G 4 HOH B 52 552 104 HOH HOH . G 4 HOH B 53 553 108 HOH HOH . G 4 HOH B 54 554 110 HOH HOH . G 4 HOH B 55 555 111 HOH HOH . G 4 HOH B 56 556 112 HOH HOH . G 4 HOH B 57 557 114 HOH HOH . G 4 HOH B 58 558 115 HOH HOH . G 4 HOH B 59 559 119 HOH HOH . G 4 HOH B 60 560 120 HOH HOH . G 4 HOH B 61 561 122 HOH HOH . G 4 HOH B 62 562 128 HOH HOH . G 4 HOH B 63 563 131 HOH HOH . G 4 HOH B 64 564 132 HOH HOH . G 4 HOH B 65 565 133 HOH HOH . G 4 HOH B 66 566 136 HOH HOH . G 4 HOH B 67 567 142 HOH HOH . G 4 HOH B 68 568 145 HOH HOH . G 4 HOH B 69 569 147 HOH HOH . G 4 HOH B 70 570 157 HOH HOH . G 4 HOH B 71 571 158 HOH HOH . G 4 HOH B 72 572 159 HOH HOH . G 4 HOH B 73 573 162 HOH HOH . G 4 HOH B 74 574 167 HOH HOH . G 4 HOH B 75 575 168 HOH HOH . G 4 HOH B 76 576 172 HOH HOH . G 4 HOH B 77 577 174 HOH HOH . G 4 HOH B 78 578 175 HOH HOH . G 4 HOH B 79 579 176 HOH HOH . G 4 HOH B 80 580 178 HOH HOH . G 4 HOH B 81 581 179 HOH HOH . G 4 HOH B 82 582 180 HOH HOH . G 4 HOH B 83 583 182 HOH HOH . G 4 HOH B 84 584 184 HOH HOH . G 4 HOH B 85 585 188 HOH HOH . G 4 HOH B 86 586 189 HOH HOH . G 4 HOH B 87 587 190 HOH HOH . G 4 HOH B 88 588 196 HOH HOH . G 4 HOH B 89 589 199 HOH HOH . G 4 HOH B 90 590 200 HOH HOH . G 4 HOH B 91 591 201 HOH HOH . G 4 HOH B 92 592 202 HOH HOH . G 4 HOH B 93 593 204 HOH HOH . G 4 HOH B 94 594 205 HOH HOH . G 4 HOH B 95 595 206 HOH HOH . G 4 HOH B 96 596 208 HOH HOH . G 4 HOH B 97 597 209 HOH HOH . G 4 HOH B 98 598 210 HOH HOH . G 4 HOH B 99 599 211 HOH HOH . G 4 HOH B 100 600 212 HOH HOH . G 4 HOH B 101 601 213 HOH HOH . G 4 HOH B 102 602 214 HOH HOH . G 4 HOH B 103 603 215 HOH HOH . G 4 HOH B 104 604 217 HOH HOH . G 4 HOH B 105 605 224 HOH HOH . G 4 HOH B 106 606 225 HOH HOH . G 4 HOH B 107 607 226 HOH HOH . G 4 HOH B 108 608 228 HOH HOH . G 4 HOH B 109 609 230 HOH HOH . G 4 HOH B 110 610 231 HOH HOH . G 4 HOH B 111 611 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 14.286 -7.028 8.363 1 36.9 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . D 3 14.045 -8.405 8.669 1 45.22 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . D 3 15.225 -6.545 9.439 1 37.76 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . D 3 14.603 -6.296 10.672 1 39.13 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . D 3 15.779 -5.226 9.077 1 37.33 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . D 3 17.145 -5.404 8.858 1 40.72 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #