data_4O9R # _model_server_result.job_id Y9cd7SmWrcPR0t0yfQBjtw _model_server_result.datetime_utc '2024-11-18 19:17:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4O9R # _exptl.entry_id 4O9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cyclopamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97 _cell.angle_gamma 90 _cell.entry_id 4O9R _cell.length_a 40.5 _cell.length_b 157.3 _cell.length_c 52.4 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 193 1_555 A SG CYS 27 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 31 A CYS 217 1_555 A SG CYS 109 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 128 A CYS 314 1_555 A SG CYS 204 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 403 A CYS 490 1_555 A SG CYS 420 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C27 H41 N O2' _chem_comp.formula_weight 411.62 _chem_comp.id CY8 _chem_comp.mon_nstd_flag . _chem_comp.name Cyclopamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3alpha,8alpha,14beta,22S,23R)-17,23-epoxyveratraman-3-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N03 C29 CY8 sing 70 n n N03 C16 CY8 sing 71 n n C26 C12 CY8 sing 72 n n C29 C28 CY8 sing 73 n n C28 C30 CY8 sing 74 n n C28 C24 CY8 sing 75 n n C13 C11 CY8 sing 76 n n C13 C08 CY8 sing 77 n n C18 C16 CY8 sing 78 n n C18 C24 CY8 sing 79 n n C18 O01 CY8 sing 80 n n C11 C06 CY8 sing 81 n n C16 C12 CY8 sing 82 n n C12 C08 CY8 sing 83 n n C08 O01 CY8 sing 84 n n C08 C14 CY8 sing 85 n n C15 C05 CY8 sing 86 n n C15 C20 CY8 sing 87 n n C06 C05 CY8 sing 88 n n C06 C09 CY8 sing 89 n n C05 C04 CY8 sing 90 n n C20 C17 CY8 doub 91 n n C14 C09 CY8 doub 92 n n C14 C27 CY8 sing 93 n n C09 C10 CY8 sing 94 n n C04 C10 CY8 sing 95 n n C04 C07 CY8 sing 96 n n C17 C07 CY8 sing 97 n n C17 C22 CY8 sing 98 n n C07 C21 CY8 sing 99 n n C07 C19 CY8 sing 100 n n C22 C25 CY8 sing 101 n n C19 C23 CY8 sing 102 n n C25 O02 CY8 sing 103 n n C25 C23 CY8 sing 104 n n O02 H1 CY8 sing 105 n n N03 H2 CY8 sing 106 n n C04 H4 CY8 sing 107 n n C05 H5 CY8 sing 108 n n C06 H6 CY8 sing 109 n n C10 H7 CY8 sing 110 n n C10 H8 CY8 sing 111 n n C11 H9 CY8 sing 112 n n C11 H10 CY8 sing 113 n n C12 H11 CY8 sing 114 n n C13 H12 CY8 sing 115 n n C13 H13 CY8 sing 116 n n C15 H14 CY8 sing 117 n n C15 H15 CY8 sing 118 n n C16 H16 CY8 sing 119 n n C18 H17 CY8 sing 120 n n C19 H18 CY8 sing 121 n n C19 H19 CY8 sing 122 n n C20 H20 CY8 sing 123 n n C21 H21 CY8 sing 124 n n C21 H22 CY8 sing 125 n n C21 H23 CY8 sing 126 n n C22 H24 CY8 sing 127 n n C22 H25 CY8 sing 128 n n C23 H26 CY8 sing 129 n n C23 H27 CY8 sing 130 n n C24 H28 CY8 sing 131 n n C24 H29 CY8 sing 132 n n C25 H30 CY8 sing 133 n n C26 H31 CY8 sing 134 n n C26 H32 CY8 sing 135 n n C26 H33 CY8 sing 136 n n C27 H34 CY8 sing 137 n n C27 H35 CY8 sing 138 n n C27 H36 CY8 sing 139 n n C28 H37 CY8 sing 140 n n C29 H38 CY8 sing 141 n n C29 H39 CY8 sing 142 n n C30 H40 CY8 sing 143 n n C30 H41 CY8 sing 144 n n C30 H42 CY8 sing 145 n n # _atom_sites.entry_id 4O9R _atom_sites.fract_transf_matrix[1][1] 0.024691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003032 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CY8 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id CY8 _pdbx_nonpoly_scheme.auth_mon_id CY8 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 CY8 . . . B 2 46.882 6.484 47.908 1 78.76 ? O01 CY8 1201 A 1 HETATM 2 O O02 CY8 . . . B 2 52.763 14.313 53.329 1 78.01 ? O02 CY8 1201 A 1 HETATM 3 N N03 CY8 . . . B 2 47.057 3.29 46.238 1 75.08 ? N03 CY8 1201 A 1 HETATM 4 C C04 CY8 . . . B 2 50.772 9.894 50.276 1 78.3 ? C04 CY8 1201 A 1 HETATM 5 C C05 CY8 . . . B 2 49.987 10.292 49.021 1 76.79 ? C05 CY8 1201 A 1 HETATM 6 C C06 CY8 . . . B 2 49.847 8.955 48.301 1 79.85 ? C06 CY8 1201 A 1 HETATM 7 C C07 CY8 . . . B 2 50.857 11.08 51.285 1 76.36 ? C07 CY8 1201 A 1 HETATM 8 C C08 CY8 . . . B 2 48.349 6.439 47.799 1 78.59 ? C08 CY8 1201 A 1 HETATM 9 C C09 CY8 . . . B 2 49.548 7.986 49.417 1 78.3 ? C09 CY8 1201 A 1 HETATM 10 C C10 CY8 . . . B 2 50.139 8.549 50.697 1 77.4 ? C10 CY8 1201 A 1 HETATM 11 C C11 CY8 . . . B 2 48.754 8.918 47.256 1 80.48 ? C11 CY8 1201 A 1 HETATM 12 C C12 CY8 . . . B 2 48.689 4.957 47.337 1 77.27 ? C12 CY8 1201 A 1 HETATM 13 C C13 CY8 . . . B 2 48.712 7.497 46.71 1 78.4 ? C13 CY8 1201 A 1 HETATM 14 C C14 CY8 . . . B 2 48.871 6.822 49.22 1 77.84 ? C14 CY8 1201 A 1 HETATM 15 C C15 CY8 . . . B 2 50.739 11.382 48.265 1 75.6 ? C15 CY8 1201 A 1 HETATM 16 C C16 CY8 . . . B 2 47.316 4.277 47.275 1 75.69 ? C16 CY8 1201 A 1 HETATM 17 C C17 CY8 . . . B 2 51.176 12.386 50.536 1 73.78 ? C17 CY8 1201 A 1 HETATM 18 C C18 CY8 . . . B 2 46.34 5.421 47.122 1 76.01 ? C18 CY8 1201 A 1 HETATM 19 C C19 CY8 . . . B 2 51.987 10.797 52.312 1 74.46 ? C19 CY8 1201 A 1 HETATM 20 C C20 CY8 . . . B 2 51.12 12.498 49.195 1 73.31 ? C20 CY8 1201 A 1 HETATM 21 C C21 CY8 . . . B 2 49.52 11.256 52.027 1 75.75 ? C21 CY8 1201 A 1 HETATM 22 C C22 CY8 . . . B 2 51.568 13.569 51.391 1 76.19 ? C22 CY8 1201 A 1 HETATM 23 C C23 CY8 . . . B 2 52.276 11.974 53.236 1 70.19 ? C23 CY8 1201 A 1 HETATM 24 C C24 CY8 . . . B 2 44.959 4.922 47.525 1 72.79 ? C24 CY8 1201 A 1 HETATM 25 C C25 CY8 . . . B 2 52.633 13.218 52.431 1 74.08 ? C25 CY8 1201 A 1 HETATM 26 C C26 CY8 . . . B 2 49.423 4.79 45.997 1 79.46 ? C26 CY8 1201 A 1 HETATM 27 C C27 CY8 . . . B 2 48.582 5.869 50.364 1 74.03 ? C27 CY8 1201 A 1 HETATM 28 C C28 CY8 . . . B 2 44.583 3.74 46.603 1 76.19 ? C28 CY8 1201 A 1 HETATM 29 C C29 CY8 . . . B 2 45.718 2.706 46.413 1 75.86 ? C29 CY8 1201 A 1 HETATM 30 C C30 CY8 . . . B 2 43.349 3.008 47.12 1 75.06 ? C30 CY8 1201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 30 #