data_4O9U
#
_model_server_result.job_id            Uw6VQ7KNVAPmXuWyQyP9lA 
_model_server_result.datetime_utc      '2025-07-30 11:52:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o9u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    4O9U 
#
_exptl.entry_id    4O9U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     1.6.1.2 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.36 
_cell.angle_gamma         90 
_cell.entry_id            4O9U 
_cell.length_a            175.331 
_cell.length_b            160.59 
_cell.length_c            139.624 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O9U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 310 n n 
PA O2A NAP sing 311 n n 
PA O5B NAP sing 312 n n 
PA O3 NAP sing 313 n n 
O2A HOA2 NAP sing 314 n n 
O5B C5B NAP sing 315 n n 
C5B C4B NAP sing 316 n n 
C5B H51A NAP sing 317 n n 
C5B H52A NAP sing 318 n n 
C4B O4B NAP sing 319 n n 
C4B C3B NAP sing 320 n n 
C4B H4B NAP sing 321 n n 
O4B C1B NAP sing 322 n n 
C3B O3B NAP sing 323 n n 
C3B C2B NAP sing 324 n n 
C3B H3B NAP sing 325 n n 
O3B HO3A NAP sing 326 n n 
C2B O2B NAP sing 327 n n 
C2B C1B NAP sing 328 n n 
C2B H2B NAP sing 329 n n 
O2B P2B NAP sing 330 n n 
C1B N9A NAP sing 331 n n 
C1B H1B NAP sing 332 n n 
N9A C8A NAP sing 333 n y 
N9A C4A NAP sing 334 n y 
C8A N7A NAP doub 335 n y 
C8A H8A NAP sing 336 n n 
N7A C5A NAP sing 337 n y 
C5A C6A NAP sing 338 n y 
C5A C4A NAP doub 339 n y 
C6A N6A NAP sing 340 n n 
C6A N1A NAP doub 341 n y 
N6A H61A NAP sing 342 n n 
N6A H62A NAP sing 343 n n 
N1A C2A NAP sing 344 n y 
C2A N3A NAP doub 345 n y 
C2A H2A NAP sing 346 n n 
N3A C4A NAP sing 347 n y 
O3 PN NAP sing 348 n n 
PN O1N NAP doub 349 n n 
PN O2N NAP sing 350 n n 
PN O5D NAP sing 351 n n 
O5D C5D NAP sing 352 n n 
C5D C4D NAP sing 353 n n 
C5D H51N NAP sing 354 n n 
C5D H52N NAP sing 355 n n 
C4D O4D NAP sing 356 n n 
C4D C3D NAP sing 357 n n 
C4D H4D NAP sing 358 n n 
O4D C1D NAP sing 359 n n 
C3D O3D NAP sing 360 n n 
C3D C2D NAP sing 361 n n 
C3D H3D NAP sing 362 n n 
O3D HO3N NAP sing 363 n n 
C2D O2D NAP sing 364 n n 
C2D C1D NAP sing 365 n n 
C2D H2D NAP sing 366 n n 
O2D HO2N NAP sing 367 n n 
C1D N1N NAP sing 368 n n 
C1D H1D NAP sing 369 n n 
N1N C2N NAP sing 370 n y 
N1N C6N NAP doub 371 n y 
C2N C3N NAP doub 372 n y 
C2N H2N NAP sing 373 n n 
C3N C7N NAP sing 374 n n 
C3N C4N NAP sing 375 n y 
C7N O7N NAP doub 376 n n 
C7N N7N NAP sing 377 n n 
N7N H71N NAP sing 378 n n 
N7N H72N NAP sing 379 n n 
C4N C5N NAP doub 380 n y 
C4N H4N NAP sing 381 n n 
C5N C6N NAP sing 382 n y 
C5N H5N NAP sing 383 n n 
C6N H6N NAP sing 384 n n 
P2B O1X NAP doub 385 n n 
P2B O2X NAP sing 386 n n 
P2B O3X NAP sing 387 n n 
O2X HOP2 NAP sing 388 n n 
O3X HOP3 NAP sing 389 n n 
#
_atom_sites.entry_id                     4O9U 
_atom_sites.fract_transf_matrix[1][1]    0.005703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004514 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006227 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009134 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAP B 1 500 500 NAP NAP . 
H 4 NAP D 1 500 500 NAP NAP . 
I 5 NAD E 1 500 500 NAD NAD . 
J 5 NAD F 1 500 500 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 4 174.743 -51.264 13.562 1 199.37 ? PA NAP 500 D 1 
HETATM 2 O O1A NAP . . . H 4 175.868 -50.721 12.711 1 199.15 ? O1A NAP 500 D 1 
HETATM 3 O O2A NAP . . . H 4 173.324 -50.825 13.288 1 199.36 ? O2A NAP 500 D 1 
HETATM 4 O O5B NAP . . . H 4 174.828 -52.873 13.491 1 203.98 ? O5B NAP 500 D 1 
HETATM 5 C C5B NAP . . . H 4 173.701 -53.73 13.685 1 208.51 ? C5B NAP 500 D 1 
HETATM 6 C C4B NAP . . . H 4 174.153 -55.158 13.395 1 211.18 ? C4B NAP 500 D 1 
HETATM 7 O O4B NAP . . . H 4 173.822 -56.054 14.459 1 212.39 ? O4B NAP 500 D 1 
HETATM 8 C C3B NAP . . . H 4 173.514 -55.742 12.144 1 211.89 ? C3B NAP 500 D 1 
HETATM 9 O O3B NAP . . . H 4 174.373 -55.548 11.017 1 212.36 ? O3B NAP 500 D 1 
HETATM 10 C C2B NAP . . . H 4 173.34 -57.219 12.455 1 214.14 ? C2B NAP 500 D 1 
HETATM 11 O O2B NAP . . . H 4 174.182 -58.036 11.643 1 220.22 ? O2B NAP 500 D 1 
HETATM 12 C C1B NAP . . . H 4 173.73 -57.376 13.918 1 212.98 ? C1B NAP 500 D 1 
HETATM 13 N N9A NAP . . . H 4 172.728 -58.218 14.625 1 212.02 ? N9A NAP 500 D 1 
HETATM 14 C C8A NAP . . . H 4 171.418 -57.937 14.785 1 212.14 ? C8A NAP 500 D 1 
HETATM 15 N N7A NAP . . . H 4 170.784 -58.921 15.474 1 211.99 ? N7A NAP 500 D 1 
HETATM 16 C C5A NAP . . . H 4 171.699 -59.863 15.765 1 209.27 ? C5A NAP 500 D 1 
HETATM 17 C C6A NAP . . . H 4 171.703 -61.167 16.473 1 205.8 ? C6A NAP 500 D 1 
HETATM 18 N N6A NAP . . . H 4 170.568 -61.668 17.014 1 201.02 ? N6A NAP 500 D 1 
HETATM 19 N N1A NAP . . . H 4 172.875 -61.84 16.551 1 204.77 ? N1A NAP 500 D 1 
HETATM 20 C C2A NAP . . . H 4 174.014 -61.355 16.016 1 206.93 ? C2A NAP 500 D 1 
HETATM 21 N N3A NAP . . . H 4 174.082 -60.179 15.361 1 208.82 ? N3A NAP 500 D 1 
HETATM 22 C C4A NAP . . . H 4 172.98 -59.399 15.203 1 210.37 ? C4A NAP 500 D 1 
HETATM 23 O O3 NAP . . . H 4 175.057 -50.973 15.115 1 195.74 ? O3 NAP 500 D 1 
HETATM 24 P PN NAP . . . H 4 176.339 -50.118 15.58 1 194.03 ? PN NAP 500 D 1 
HETATM 25 O O1N NAP . . . H 4 177.581 -50.879 15.194 1 191.02 ? O1N NAP 500 D 1 
HETATM 26 O O2N NAP . . . H 4 176.124 -49.738 17.025 1 190.78 ? O2N NAP 500 D 1 
HETATM 27 O O5D NAP . . . H 4 176.28 -48.803 14.644 1 199.94 ? O5D NAP 500 D 1 
HETATM 28 C C5D NAP . . . H 4 175.527 -47.641 14.992 1 208.77 ? C5D NAP 500 D 1 
HETATM 29 C C4D NAP . . . H 4 175.056 -46.905 13.738 1 214.42 ? C4D NAP 500 D 1 
HETATM 30 O O4D NAP . . . H 4 173.724 -46.436 13.964 1 216.97 ? O4D NAP 500 D 1 
HETATM 31 C C3D NAP . . . H 4 175.912 -45.684 13.408 1 217.38 ? C3D NAP 500 D 1 
HETATM 32 O O3D NAP . . . H 4 176.25 -45.679 12.016 1 215.79 ? O3D NAP 500 D 1 
HETATM 33 C C2D NAP . . . H 4 175.064 -44.467 13.723 1 218.94 ? C2D NAP 500 D 1 
HETATM 34 O O2D NAP . . . H 4 175.134 -43.488 12.678 1 218.37 ? O2D NAP 500 D 1 
HETATM 35 C C1D NAP . . . H 4 173.647 -45.009 13.855 1 219.63 ? C1D NAP 500 D 1 
HETATM 36 N N1N NAP . . . H 4 172.935 -44.425 15.001 1 221.93 ? N1N NAP 500 D 1 
HETATM 37 C C2N NAP . . . H 4 173.362 -44.567 16.278 1 224.16 ? C2N NAP 500 D 1 
HETATM 38 C C3N NAP . . . H 4 172.646 -43.991 17.337 1 226.23 ? C3N NAP 500 D 1 
HETATM 39 C C7N NAP . . . H 4 173.076 -44.112 18.771 1 227.36 ? C7N NAP 500 D 1 
HETATM 40 O O7N NAP . . . H 4 173.399 -43.106 19.386 1 228.18 ? O7N NAP 500 D 1 
HETATM 41 N N7N NAP . . . H 4 173.083 -45.312 19.347 1 229.45 ? N7N NAP 500 D 1 
HETATM 42 C C4N NAP . . . H 4 171.489 -43.278 17.06 1 225.09 ? C4N NAP 500 D 1 
HETATM 43 C C5N NAP . . . H 4 171.086 -43.145 15.742 1 222.86 ? C5N NAP 500 D 1 
HETATM 44 C C6N NAP . . . H 4 171.82 -43.735 14.724 1 222.47 ? C6N NAP 500 D 1 
HETATM 45 P P2B NAP . . . H 4 173.67 -59.447 11.055 1 226.2 ? P2B NAP 500 D 1 
HETATM 46 O O1X NAP . . . H 4 172.361 -59.121 10.373 1 228.94 ? O1X NAP 500 D 1 
HETATM 47 O O2X NAP . . . H 4 174.775 -59.863 10.113 1 226.85 ? O2X NAP 500 D 1 
HETATM 48 O O3X NAP . . . H 4 173.534 -60.337 12.267 1 228.09 ? O3X NAP 500 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#