data_4OAU # _model_server_result.job_id py8ZYKnSpCubn7VgWpHSQg _model_server_result.datetime_utc '2024-12-23 12:17:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4OAU # _exptl.entry_id 4OAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OAU _cell.length_a 60.13 _cell.length_b 116.6 _cell.length_c 162.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2' A 1 A A 1 1_555 B P A 2 A A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? covale ? covale2 B O2' A 2 A A 2 1_555 B P A 3 A A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? metalc ? metalc1 A OD1 ASN 470 C ASN 490 1_555 D MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 A OD2 ASP 483 C ASP 503 1_555 D MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A OD2 ASP 483 C ASP 503 1_555 E MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 A OD1 ASP 483 C ASP 503 1_555 E MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 A OD1 ASP 485 C ASP 505 1_555 E MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 C O1B ADP . C ADP 801 1_555 D MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc7 C O2A ADP . C ADP 801 1_555 D MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc8 C O3B ADP . C ADP 801 1_555 E MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc9 D MG MG . C MG 802 1_555 F O HOH . C HOH 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 40 n n PB O2B ADP sing 41 n n PB O3B ADP sing 42 n n PB O3A ADP sing 43 n n O2B HOB2 ADP sing 44 n n O3B HOB3 ADP sing 45 n n PA O1A ADP doub 46 n n PA O2A ADP sing 47 n n PA O3A ADP sing 48 n n PA O5' ADP sing 49 n n O2A HOA2 ADP sing 50 n n O5' C5' ADP sing 51 n n C5' C4' ADP sing 52 n n C5' "H5'1" ADP sing 53 n n C5' "H5'2" ADP sing 54 n n C4' O4' ADP sing 55 n n C4' C3' ADP sing 56 n n C4' H4' ADP sing 57 n n O4' C1' ADP sing 58 n n C3' O3' ADP sing 59 n n C3' C2' ADP sing 60 n n C3' H3' ADP sing 61 n n O3' HO3' ADP sing 62 n n C2' O2' ADP sing 63 n n C2' C1' ADP sing 64 n n C2' H2' ADP sing 65 n n O2' HO2' ADP sing 66 n n C1' N9 ADP sing 67 n n C1' H1' ADP sing 68 n n N9 C8 ADP sing 69 n y N9 C4 ADP sing 70 n y C8 N7 ADP doub 71 n y C8 H8 ADP sing 72 n n N7 C5 ADP sing 73 n y C5 C6 ADP sing 74 n y C5 C4 ADP doub 75 n y C6 N6 ADP sing 76 n n C6 N1 ADP doub 77 n y N6 HN61 ADP sing 78 n n N6 HN62 ADP sing 79 n n N1 C2 ADP sing 80 n y C2 N3 ADP doub 81 n y C2 H2 ADP sing 82 n n N3 C4 ADP sing 83 n y # _atom_sites.entry_id 4OAU _atom_sites.fract_transf_matrix[1][1] 0.016631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP C 1 801 801 ADP ADP . D 4 MG C 1 802 802 MG MG . E 4 MG C 1 803 803 MG MG . F 5 HOH C 1 901 901 HOH HOH . F 5 HOH C 2 902 902 HOH HOH . F 5 HOH C 3 903 904 HOH HOH . F 5 HOH C 4 904 905 HOH HOH . F 5 HOH C 5 905 908 HOH HOH . F 5 HOH C 6 906 909 HOH HOH . F 5 HOH C 7 907 910 HOH HOH . F 5 HOH C 8 908 911 HOH HOH . F 5 HOH C 9 909 912 HOH HOH . F 5 HOH C 10 910 914 HOH HOH . F 5 HOH C 11 911 915 HOH HOH . F 5 HOH C 12 912 916 HOH HOH . F 5 HOH C 13 913 918 HOH HOH . F 5 HOH C 14 914 919 HOH HOH . F 5 HOH C 15 915 920 HOH HOH . F 5 HOH C 16 916 921 HOH HOH . F 5 HOH C 17 917 922 HOH HOH . F 5 HOH C 18 918 923 HOH HOH . F 5 HOH C 19 919 924 HOH HOH . F 5 HOH C 20 920 925 HOH HOH . F 5 HOH C 21 921 926 HOH HOH . F 5 HOH C 22 922 928 HOH HOH . F 5 HOH C 23 923 930 HOH HOH . F 5 HOH C 24 924 931 HOH HOH . F 5 HOH C 25 925 932 HOH HOH . F 5 HOH C 26 926 933 HOH HOH . F 5 HOH C 27 927 934 HOH HOH . F 5 HOH C 28 928 935 HOH HOH . F 5 HOH C 29 929 936 HOH HOH . F 5 HOH C 30 930 937 HOH HOH . F 5 HOH C 31 931 938 HOH HOH . F 5 HOH C 32 932 939 HOH HOH . F 5 HOH C 33 933 940 HOH HOH . F 5 HOH C 34 934 941 HOH HOH . F 5 HOH C 35 935 942 HOH HOH . F 5 HOH C 36 936 944 HOH HOH . F 5 HOH C 37 937 945 HOH HOH . F 5 HOH C 38 938 946 HOH HOH . F 5 HOH C 39 939 947 HOH HOH . F 5 HOH C 40 940 948 HOH HOH . F 5 HOH C 41 941 949 HOH HOH . F 5 HOH C 42 942 950 HOH HOH . F 5 HOH C 43 943 951 HOH HOH . F 5 HOH C 44 944 952 HOH HOH . F 5 HOH C 45 945 953 HOH HOH . F 5 HOH C 46 946 955 HOH HOH . F 5 HOH C 47 947 956 HOH HOH . F 5 HOH C 48 948 957 HOH HOH . F 5 HOH C 49 949 958 HOH HOH . F 5 HOH C 50 950 959 HOH HOH . F 5 HOH C 51 951 960 HOH HOH . F 5 HOH C 52 952 961 HOH HOH . F 5 HOH C 53 953 962 HOH HOH . F 5 HOH C 54 954 963 HOH HOH . F 5 HOH C 55 955 964 HOH HOH . F 5 HOH C 56 956 965 HOH HOH . F 5 HOH C 57 957 966 HOH HOH . F 5 HOH C 58 958 967 HOH HOH . F 5 HOH C 59 959 968 HOH HOH . F 5 HOH C 60 960 969 HOH HOH . F 5 HOH C 61 961 970 HOH HOH . F 5 HOH C 62 962 972 HOH HOH . F 5 HOH C 63 963 974 HOH HOH . F 5 HOH C 64 964 975 HOH HOH . F 5 HOH C 65 965 976 HOH HOH . F 5 HOH C 66 966 977 HOH HOH . F 5 HOH C 67 967 978 HOH HOH . F 5 HOH C 68 968 979 HOH HOH . F 5 HOH C 69 969 980 HOH HOH . F 5 HOH C 70 970 981 HOH HOH . F 5 HOH C 71 971 982 HOH HOH . F 5 HOH C 72 972 983 HOH HOH . F 5 HOH C 73 973 984 HOH HOH . F 5 HOH C 74 974 985 HOH HOH . F 5 HOH C 75 975 986 HOH HOH . F 5 HOH C 76 976 987 HOH HOH . F 5 HOH C 77 977 988 HOH HOH . F 5 HOH C 78 978 989 HOH HOH . F 5 HOH C 79 979 990 HOH HOH . F 5 HOH C 80 980 991 HOH HOH . F 5 HOH C 81 981 992 HOH HOH . F 5 HOH C 82 982 993 HOH HOH . F 5 HOH C 83 983 994 HOH HOH . F 5 HOH C 84 984 995 HOH HOH . F 5 HOH C 85 985 996 HOH HOH . F 5 HOH C 86 986 997 HOH HOH . F 5 HOH C 87 987 998 HOH HOH . F 5 HOH C 88 988 999 HOH HOH . F 5 HOH C 89 989 1000 HOH HOH . F 5 HOH C 90 990 1001 HOH HOH . F 5 HOH C 91 991 1002 HOH HOH . F 5 HOH C 92 992 1003 HOH HOH . F 5 HOH C 93 993 1004 HOH HOH . F 5 HOH C 94 994 1005 HOH HOH . F 5 HOH C 95 995 1006 HOH HOH . F 5 HOH C 96 996 1007 HOH HOH . F 5 HOH C 97 997 1008 HOH HOH . F 5 HOH C 98 998 1009 HOH HOH . F 5 HOH C 99 999 1010 HOH HOH . F 5 HOH C 100 1000 1011 HOH HOH . F 5 HOH C 101 1001 1012 HOH HOH . F 5 HOH C 102 1002 1013 HOH HOH . F 5 HOH C 103 1003 1014 HOH HOH . F 5 HOH C 104 1004 1015 HOH HOH . F 5 HOH C 105 1005 1016 HOH HOH . F 5 HOH C 106 1006 1017 HOH HOH . F 5 HOH C 107 1007 1018 HOH HOH . F 5 HOH C 108 1008 1019 HOH HOH . F 5 HOH C 109 1009 1020 HOH HOH . F 5 HOH C 110 1010 1021 HOH HOH . F 5 HOH C 111 1011 1022 HOH HOH . F 5 HOH C 112 1012 1023 HOH HOH . F 5 HOH C 113 1013 1024 HOH HOH . F 5 HOH C 114 1014 1025 HOH HOH . F 5 HOH C 115 1015 1026 HOH HOH . F 5 HOH C 116 1016 1027 HOH HOH . F 5 HOH C 117 1017 1028 HOH HOH . F 5 HOH C 118 1018 1029 HOH HOH . F 5 HOH C 119 1019 1030 HOH HOH . F 5 HOH C 120 1020 1031 HOH HOH . F 5 HOH C 121 1021 1032 HOH HOH . F 5 HOH C 122 1022 1033 HOH HOH . F 5 HOH C 123 1023 1034 HOH HOH . F 5 HOH C 124 1024 1035 HOH HOH . F 5 HOH C 125 1025 1036 HOH HOH . F 5 HOH C 126 1026 1037 HOH HOH . F 5 HOH C 127 1027 1038 HOH HOH . F 5 HOH C 128 1028 1039 HOH HOH . G 5 HOH A 1 101 903 HOH HOH . G 5 HOH A 2 102 906 HOH HOH . G 5 HOH A 3 103 907 HOH HOH . G 5 HOH A 4 104 913 HOH HOH . G 5 HOH A 5 105 917 HOH HOH . G 5 HOH A 6 106 927 HOH HOH . G 5 HOH A 7 107 929 HOH HOH . G 5 HOH A 8 108 943 HOH HOH . G 5 HOH A 9 109 954 HOH HOH . G 5 HOH A 10 110 971 HOH HOH . G 5 HOH A 11 111 973 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 9.986 -38.27 18.04 1 69.29 ? PB ADP 801 C 1 HETATM 2 O O1B ADP . . . C 3 10.112 -39.67 18.582 1 66.6 1 O1B ADP 801 C 1 HETATM 3 O O2B ADP . . . C 3 10.139 -37.191 19.078 1 68.81 ? O2B ADP 801 C 1 HETATM 4 O O3B ADP . . . C 3 10.777 -38.043 16.771 1 81.76 ? O3B ADP 801 C 1 HETATM 5 P PA ADP . . . C 3 7.57 -39.357 17.004 1 62.61 ? PA ADP 801 C 1 HETATM 6 O O1A ADP . . . C 3 7.268 -39.119 15.547 1 63.86 1 O1A ADP 801 C 1 HETATM 7 O O2A ADP . . . C 3 8.217 -40.656 17.425 1 59.87 ? O2A ADP 801 C 1 HETATM 8 O O3A ADP . . . C 3 8.45 -38.122 17.56 1 61.75 ? O3A ADP 801 C 1 HETATM 9 O O5' ADP . . . C 3 6.224 -39.186 17.869 1 62.88 ? O5' ADP 801 C 1 HETATM 10 C C5' ADP . . . C 3 6.276 -39.472 19.266 1 61.42 ? C5' ADP 801 C 1 HETATM 11 C C4' ADP . . . C 3 5.069 -40.283 19.714 1 68.19 ? C4' ADP 801 C 1 HETATM 12 O O4' ADP . . . C 3 3.852 -39.715 19.228 1 72.58 ? O4' ADP 801 C 1 HETATM 13 C C3' ADP . . . C 3 5.098 -41.707 19.184 1 63.72 ? C3' ADP 801 C 1 HETATM 14 O O3' ADP . . . C 3 5.803 -42.574 20.075 1 66.58 ? O3' ADP 801 C 1 HETATM 15 C C2' ADP . . . C 3 3.631 -42.065 19.111 1 67.59 ? C2' ADP 801 C 1 HETATM 16 O O2' ADP . . . C 3 3.222 -42.562 20.386 1 71.83 ? O2' ADP 801 C 1 HETATM 17 C C1' ADP . . . C 3 2.918 -40.745 18.893 1 70.53 ? C1' ADP 801 C 1 HETATM 18 N N9 ADP . . . C 3 2.53 -40.625 17.464 1 72.5 ? N9 ADP 801 C 1 HETATM 19 C C8 ADP . . . C 3 3.271 -40.042 16.502 1 73.47 ? C8 ADP 801 C 1 HETATM 20 N N7 ADP . . . C 3 2.642 -40.093 15.299 1 74.63 ? N7 ADP 801 C 1 HETATM 21 C C5 ADP . . . C 3 1.466 -40.722 15.486 1 75.43 ? C5 ADP 801 C 1 HETATM 22 C C6 ADP . . . C 3 0.314 -41.109 14.636 1 74.84 ? C6 ADP 801 C 1 HETATM 23 N N6 ADP . . . C 3 0.298 -40.829 13.31 1 72.55 ? N6 ADP 801 C 1 HETATM 24 N N1 ADP . . . C 3 -0.716 -41.756 15.225 1 73.82 ? N1 ADP 801 C 1 HETATM 25 C C2 ADP . . . C 3 -0.71 -42.042 16.54 1 75.31 ? C2 ADP 801 C 1 HETATM 26 N N3 ADP . . . C 3 0.3 -41.723 17.369 1 58.93 ? N3 ADP 801 C 1 HETATM 27 C C4 ADP . . . C 3 1.398 -41.074 16.913 1 75.35 ? C4 ADP 801 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #