data_4OAZ
#
_model_server_result.job_id            QZOh0Q47S_LTHwT98CMNdw 
_model_server_result.datetime_utc      '2024-10-28 02:30:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oaz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4OAZ 
#
_exptl.entry_id    4OAZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              690.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OAZ 
_cell.length_a            36.87 
_cell.length_b            95.53 
_cell.length_c            100.12 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OAZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C20 H24 N10 O14 P2' 
_chem_comp.formula_weight    690.411 
_chem_comp.id                C2E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'c-di-GMP;Cyclic diguanosine monophosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O2P C2E sing 70 n n 
O1P P1 C2E doub 71 n n 
O5' P1 C2E sing 72 n n 
C5' O5' C2E sing 73 n n 
C4' O4' C2E sing 74 n n 
C4' C5' C2E sing 75 n n 
C3' C4' C2E sing 76 n n 
O3' P11 C2E sing 77 n n 
O3' C3' C2E sing 78 n n 
C2' C3' C2E sing 79 n n 
C2' C1' C2E sing 80 n n 
O2' C2' C2E sing 81 n n 
C1' O4' C2E sing 82 n n 
C1' N9 C2E sing 83 n n 
N9 C4 C2E sing 84 n y 
N9 C8 C2E sing 85 n y 
C8 N7 C2E doub 86 n y 
C5 N7 C2E sing 87 n y 
C5 C6 C2E sing 88 n n 
C6 O6 C2E doub 89 n n 
N1 C6 C2E sing 90 n n 
C2 N1 C2E sing 91 n n 
N2 C2 C2E sing 92 n n 
N3 C2 C2E doub 93 n n 
N3 C4 C2E sing 94 n n 
C4 C5 C2E doub 95 n y 
P11 O21 C2E sing 96 n n 
P11 O5A C2E sing 97 n n 
O11 P11 C2E doub 98 n n 
C5A O5A C2E sing 99 n n 
C5A C4A C2E sing 100 n n 
C4A O4A C2E sing 101 n n 
C4A C3A C2E sing 102 n n 
O4A C1A C2E sing 103 n n 
C3A C2A C2E sing 104 n n 
O3A C3A C2E sing 105 n n 
O3A P1 C2E sing 106 n n 
C2A O2A C2E sing 107 n n 
C1A C2A C2E sing 108 n n 
C1A N91 C2E sing 109 n n 
N91 C41 C2E sing 110 n y 
C81 N71 C2E doub 111 n y 
C81 N91 C2E sing 112 n y 
N71 C51 C2E sing 113 n y 
C51 C41 C2E doub 114 n y 
C51 C61 C2E sing 115 n n 
C61 O61 C2E doub 116 n n 
C61 N11 C2E sing 117 n n 
C21 N11 C2E sing 118 n n 
C21 N21 C2E sing 119 n n 
N31 C21 C2E doub 120 n n 
C41 N31 C2E sing 121 n n 
O2P HO2P C2E sing 122 n n 
C5' "H5'1" C2E sing 123 n n 
C5' "H5'2" C2E sing 124 n n 
C4' H4' C2E sing 125 n n 
C3' H3' C2E sing 126 n n 
C2' H2' C2E sing 127 n n 
O2' HO2' C2E sing 128 n n 
C1' H1' C2E sing 129 n n 
C8 H8 C2E sing 130 n n 
N1 HN1 C2E sing 131 n n 
N2 HN21 C2E sing 132 n n 
N2 HN22 C2E sing 133 n n 
O21 HO21 C2E sing 134 n n 
C5A H511 C2E sing 135 n n 
C5A H512 C2E sing 136 n n 
C4A H4A C2E sing 137 n n 
C3A H3A C2E sing 138 n n 
C2A H2A C2E sing 139 n n 
O2A HO2A C2E sing 140 n n 
C1A H1A C2E sing 141 n n 
C81 H81 C2E sing 142 n n 
N11 HN11 C2E sing 143 n n 
N21 HN24 C2E sing 144 n n 
N21 HN23 C2E sing 145 n n 
#
_atom_sites.entry_id                     4OAZ 
_atom_sites.fract_transf_matrix[1][1]    0.027122 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C2E R 1 201 201 C2E C2E . 
D 2 C2E R 1 202 201 C2E C2E . 
E 2 C2E A 1 201 202 C2E C2E . 
F 2 C2E A 1 202 202 C2E C2E . 
G 3 HOH R 1 301 1 HOH HOH . 
G 3 HOH R 2 302 2 HOH HOH . 
G 3 HOH R 3 303 3 HOH HOH . 
G 3 HOH R 4 304 4 HOH HOH . 
G 3 HOH R 5 305 5 HOH HOH . 
G 3 HOH R 6 306 6 HOH HOH . 
G 3 HOH R 7 307 7 HOH HOH . 
G 3 HOH R 8 308 17 HOH HOH . 
G 3 HOH R 9 309 18 HOH HOH . 
G 3 HOH R 10 310 19 HOH HOH . 
G 3 HOH R 11 311 21 HOH HOH . 
H 3 HOH A 1 301 8 HOH HOH . 
H 3 HOH A 2 302 9 HOH HOH . 
H 3 HOH A 3 303 10 HOH HOH . 
H 3 HOH A 4 304 11 HOH HOH . 
H 3 HOH A 5 305 12 HOH HOH . 
H 3 HOH A 6 306 13 HOH HOH . 
H 3 HOH A 7 307 14 HOH HOH . 
H 3 HOH A 8 308 15 HOH HOH . 
H 3 HOH A 9 309 16 HOH HOH . 
H 3 HOH A 10 310 20 HOH HOH . 
H 3 HOH A 11 311 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 C2E . . . C 2 12.057 51.486 5.955 1 42.03 ? P1 C2E 201 R 1 
HETATM 2 O O2P C2E . . . C 2 11.079 50.37 5.932 1 40.08 ? O2P C2E 201 R 1 
HETATM 3 O O1P C2E . . . C 2 13.272 51.16 5.163 1 34.27 ? O1P C2E 201 R 1 
HETATM 4 O O5' C2E . . . C 2 12.571 51.899 7.392 1 40.85 ? O5' C2E 201 R 1 
HETATM 5 C C5' C2E . . . C 2 11.562 52.178 8.298 1 39.91 ? C5' C2E 201 R 1 
HETATM 6 C C4' C2E . . . C 2 12.251 53.048 9.307 1 35.76 ? C4' C2E 201 R 1 
HETATM 7 O O4' C2E . . . C 2 13.203 52.426 10.074 1 29.8 ? O4' C2E 201 R 1 
HETATM 8 C C3' C2E . . . C 2 12.627 54.438 9.014 1 38.72 ? C3' C2E 201 R 1 
HETATM 9 O O3' C2E . . . C 2 11.55 55.326 8.966 1 43.13 ? O3' C2E 201 R 1 
HETATM 10 C C2' C2E . . . C 2 13.5 54.714 10.113 1 40.92 ? C2' C2E 201 R 1 
HETATM 11 O O2' C2E . . . C 2 12.814 55.12 11.335 1 33.53 ? O2' C2E 201 R 1 
HETATM 12 C C1' C2E . . . C 2 14.112 53.444 10.413 1 35.39 ? C1' C2E 201 R 1 
HETATM 13 N N9 C2E . . . C 2 15.376 53.1 9.685 1 33.31 ? N9 C2E 201 R 1 
HETATM 14 C C8 C2E . . . C 2 15.584 52.306 8.622 1 37.22 ? C8 C2E 201 R 1 
HETATM 15 N N7 C2E . . . C 2 16.789 52.259 8.328 1 38.59 ? N7 C2E 201 R 1 
HETATM 16 C C5 C2E . . . C 2 17.534 53.036 9.105 1 34.09 ? C5 C2E 201 R 1 
HETATM 17 C C6 C2E . . . C 2 18.859 53.369 9.262 1 36.47 ? C6 C2E 201 R 1 
HETATM 18 O O6 C2E . . . C 2 19.835 52.882 8.455 1 32.68 ? O6 C2E 201 R 1 
HETATM 19 N N1 C2E . . . C 2 19.237 54.211 10.253 1 45.62 ? N1 C2E 201 R 1 
HETATM 20 C C2 C2E . . . C 2 18.303 54.775 11.094 1 38.38 ? C2 C2E 201 R 1 
HETATM 21 N N2 C2E . . . C 2 18.762 55.695 12.135 1 34.19 ? N2 C2E 201 R 1 
HETATM 22 N N3 C2E . . . C 2 16.986 54.465 11.03 1 40.65 ? N3 C2E 201 R 1 
HETATM 23 C C4 C2E . . . C 2 16.6 53.614 10.063 1 38.78 ? C4 C2E 201 R 1 
HETATM 24 P P11 C2E . . . C 2 11.649 56.612 8.091 1 38.32 ? P11 C2E 201 R 1 
HETATM 25 O O21 C2E . . . C 2 10.406 57.468 8.292 1 37.24 ? O21 C2E 201 R 1 
HETATM 26 O O11 C2E . . . C 2 12.919 57.287 8.501 1 36.61 ? O11 C2E 201 R 1 
HETATM 27 O O5A C2E . . . C 2 11.805 56.194 6.571 1 44.46 ? O5A C2E 201 R 1 
HETATM 28 C C5A C2E . . . C 2 10.633 55.727 5.957 1 39.75 ? C5A C2E 201 R 1 
HETATM 29 C C4A C2E . . . C 2 11.166 54.986 4.776 1 39.63 ? C4A C2E 201 R 1 
HETATM 30 O O4A C2E . . . C 2 11.545 55.87 3.705 1 37.96 ? O4A C2E 201 R 1 
HETATM 31 C C3A C2E . . . C 2 12.006 53.776 4.903 1 41.84 ? C3A C2E 201 R 1 
HETATM 32 O O3A C2E . . . C 2 11.246 52.635 5.279 1 44.33 ? O3A C2E 201 R 1 
HETATM 33 C C2A C2E . . . C 2 12.574 53.75 3.526 1 41.6 ? C2A C2E 201 R 1 
HETATM 34 O O2A C2E . . . C 2 11.777 53.051 2.665 1 40.8 ? O2A C2E 201 R 1 
HETATM 35 C C1A C2E . . . C 2 12.614 55.211 3.118 1 40.31 ? C1A C2E 201 R 1 
HETATM 36 N N91 C2E . . . C 2 13.843 55.892 3.464 1 38.58 ? N91 C2E 201 R 1 
HETATM 37 C C81 C2E . . . C 2 14.133 56.693 4.454 1 38.46 ? C81 C2E 201 R 1 
HETATM 38 N N71 C2E . . . C 2 15.309 57.068 4.373 1 37.37 ? N71 C2E 201 R 1 
HETATM 39 C C51 C2E . . . C 2 16.007 56.524 3.389 1 36.85 ? C51 C2E 201 R 1 
HETATM 40 C C61 C2E . . . C 2 17.299 56.54 2.832 1 37.41 ? C61 C2E 201 R 1 
HETATM 41 O O61 C2E . . . C 2 18.29 57.235 3.329 1 40.92 ? O61 C2E 201 R 1 
HETATM 42 N N11 C2E . . . C 2 17.54 55.836 1.728 1 35.26 ? N11 C2E 201 R 1 
HETATM 43 C C21 C2E . . . C 2 16.596 55.045 1.148 1 44.6 ? C21 C2E 201 R 1 
HETATM 44 N N21 C2E . . . C 2 16.925 54.278 -0.027 1 45.22 ? N21 C2E 201 R 1 
HETATM 45 N N31 C2E . . . C 2 15.332 54.967 1.613 1 44.82 ? N31 C2E 201 R 1 
HETATM 46 C C41 C2E . . . C 2 15.047 55.703 2.729 1 37.52 ? C41 C2E 201 R 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           46 
#