data_4OB5 # _model_server_result.job_id CELejaWJya96xGLtH-hqtA _model_server_result.datetime_utc '2024-11-06 23:46:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ob5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4OB5 # _exptl.entry_id 4OB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OB5 _cell.length_a 35.535 _cell.length_b 48.947 _cell.length_c 117.272 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 B SG CYS 24 L CYS 23 1_555 B SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4OB5 _atom_sites.fract_transf_matrix[1][1] 0.028141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 201 1 GOL GOL . D 3 GOL L 1 202 2 GOL GOL . E 3 GOL L 1 203 3 GOL GOL . F 4 TMO L 1 204 1 TMO TMO . G 5 HOH H 1 201 9 HOH HOH . G 5 HOH H 2 202 11 HOH HOH . G 5 HOH H 3 203 13 HOH HOH . G 5 HOH H 4 204 16 HOH HOH . G 5 HOH H 5 205 30 HOH HOH . G 5 HOH H 6 206 31 HOH HOH . G 5 HOH H 7 207 33 HOH HOH . G 5 HOH H 8 208 37 HOH HOH . G 5 HOH H 9 209 42 HOH HOH . G 5 HOH H 10 210 47 HOH HOH . G 5 HOH H 11 211 48 HOH HOH . G 5 HOH H 12 212 52 HOH HOH . G 5 HOH H 13 213 55 HOH HOH . G 5 HOH H 14 214 58 HOH HOH . G 5 HOH H 15 215 62 HOH HOH . G 5 HOH H 16 216 63 HOH HOH . G 5 HOH H 17 217 68 HOH HOH . G 5 HOH H 18 218 70 HOH HOH . G 5 HOH H 19 219 71 HOH HOH . G 5 HOH H 20 220 76 HOH HOH . G 5 HOH H 21 221 81 HOH HOH . G 5 HOH H 22 222 83 HOH HOH . G 5 HOH H 23 223 84 HOH HOH . G 5 HOH H 24 224 85 HOH HOH . G 5 HOH H 25 225 86 HOH HOH . G 5 HOH H 26 226 91 HOH HOH . G 5 HOH H 27 227 94 HOH HOH . G 5 HOH H 28 228 102 HOH HOH . G 5 HOH H 29 229 104 HOH HOH . G 5 HOH H 30 230 107 HOH HOH . G 5 HOH H 31 231 108 HOH HOH . G 5 HOH H 32 232 109 HOH HOH . G 5 HOH H 33 233 111 HOH HOH . G 5 HOH H 34 234 112 HOH HOH . G 5 HOH H 35 235 113 HOH HOH . G 5 HOH H 36 236 114 HOH HOH . G 5 HOH H 37 237 115 HOH HOH . G 5 HOH H 38 238 116 HOH HOH . G 5 HOH H 39 239 117 HOH HOH . G 5 HOH H 40 240 120 HOH HOH . G 5 HOH H 41 241 122 HOH HOH . G 5 HOH H 42 242 123 HOH HOH . G 5 HOH H 43 243 124 HOH HOH . G 5 HOH H 44 244 131 HOH HOH . G 5 HOH H 45 245 132 HOH HOH . G 5 HOH H 46 246 134 HOH HOH . G 5 HOH H 47 247 137 HOH HOH . G 5 HOH H 48 248 139 HOH HOH . G 5 HOH H 49 249 141 HOH HOH . G 5 HOH H 50 250 144 HOH HOH . G 5 HOH H 51 251 145 HOH HOH . G 5 HOH H 52 252 147 HOH HOH . G 5 HOH H 53 253 148 HOH HOH . G 5 HOH H 54 254 151 HOH HOH . H 5 HOH L 1 301 1 HOH HOH . H 5 HOH L 2 302 2 HOH HOH . H 5 HOH L 3 303 4 HOH HOH . H 5 HOH L 4 304 5 HOH HOH . H 5 HOH L 5 305 6 HOH HOH . H 5 HOH L 6 306 7 HOH HOH . H 5 HOH L 7 307 8 HOH HOH . H 5 HOH L 8 308 10 HOH HOH . H 5 HOH L 9 309 14 HOH HOH . H 5 HOH L 10 310 17 HOH HOH . H 5 HOH L 11 311 18 HOH HOH . H 5 HOH L 12 312 19 HOH HOH . H 5 HOH L 13 313 21 HOH HOH . H 5 HOH L 14 314 24 HOH HOH . H 5 HOH L 15 315 25 HOH HOH . H 5 HOH L 16 316 26 HOH HOH . H 5 HOH L 17 317 27 HOH HOH . H 5 HOH L 18 318 28 HOH HOH . H 5 HOH L 19 319 29 HOH HOH . H 5 HOH L 20 320 32 HOH HOH . H 5 HOH L 21 321 34 HOH HOH . H 5 HOH L 22 322 35 HOH HOH . H 5 HOH L 23 323 36 HOH HOH . H 5 HOH L 24 324 38 HOH HOH . H 5 HOH L 25 325 39 HOH HOH . H 5 HOH L 26 326 40 HOH HOH . H 5 HOH L 27 327 41 HOH HOH . H 5 HOH L 28 328 43 HOH HOH . H 5 HOH L 29 329 44 HOH HOH . H 5 HOH L 30 330 45 HOH HOH . H 5 HOH L 31 331 46 HOH HOH . H 5 HOH L 32 332 49 HOH HOH . H 5 HOH L 33 333 50 HOH HOH . H 5 HOH L 34 334 51 HOH HOH . H 5 HOH L 35 335 53 HOH HOH . H 5 HOH L 36 336 54 HOH HOH . H 5 HOH L 37 337 56 HOH HOH . H 5 HOH L 38 338 57 HOH HOH . H 5 HOH L 39 339 59 HOH HOH . H 5 HOH L 40 340 60 HOH HOH . H 5 HOH L 41 341 61 HOH HOH . H 5 HOH L 42 342 64 HOH HOH . H 5 HOH L 43 343 65 HOH HOH . H 5 HOH L 44 344 66 HOH HOH . H 5 HOH L 45 345 67 HOH HOH . H 5 HOH L 46 346 69 HOH HOH . H 5 HOH L 47 347 72 HOH HOH . H 5 HOH L 48 348 73 HOH HOH . H 5 HOH L 49 349 74 HOH HOH . H 5 HOH L 50 350 75 HOH HOH . H 5 HOH L 51 351 77 HOH HOH . H 5 HOH L 52 352 78 HOH HOH . H 5 HOH L 53 353 79 HOH HOH . H 5 HOH L 54 354 80 HOH HOH . H 5 HOH L 55 355 87 HOH HOH . H 5 HOH L 56 356 88 HOH HOH . H 5 HOH L 57 357 89 HOH HOH . H 5 HOH L 58 358 92 HOH HOH . H 5 HOH L 59 359 93 HOH HOH . H 5 HOH L 60 360 95 HOH HOH . H 5 HOH L 61 361 96 HOH HOH . H 5 HOH L 62 362 97 HOH HOH . H 5 HOH L 63 363 98 HOH HOH . H 5 HOH L 64 364 99 HOH HOH . H 5 HOH L 65 365 100 HOH HOH . H 5 HOH L 66 366 101 HOH HOH . H 5 HOH L 67 367 103 HOH HOH . H 5 HOH L 68 368 105 HOH HOH . H 5 HOH L 69 369 106 HOH HOH . H 5 HOH L 70 370 110 HOH HOH . H 5 HOH L 71 371 118 HOH HOH . H 5 HOH L 72 372 119 HOH HOH . H 5 HOH L 73 373 121 HOH HOH . H 5 HOH L 74 374 125 HOH HOH . H 5 HOH L 75 375 126 HOH HOH . H 5 HOH L 76 376 128 HOH HOH . H 5 HOH L 77 377 129 HOH HOH . H 5 HOH L 78 378 130 HOH HOH . H 5 HOH L 79 379 133 HOH HOH . H 5 HOH L 80 380 135 HOH HOH . H 5 HOH L 81 381 136 HOH HOH . H 5 HOH L 82 382 138 HOH HOH . H 5 HOH L 83 383 140 HOH HOH . H 5 HOH L 84 384 142 HOH HOH . H 5 HOH L 85 385 143 HOH HOH . H 5 HOH L 86 386 146 HOH HOH . H 5 HOH L 87 387 149 HOH HOH . H 5 HOH L 88 388 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -3.118 0.689 17.729 1 28.57 ? C1 GOL 201 L 1 HETATM 2 O O1 GOL . . . C 3 -3.026 -0.566 17.029 1 31.32 ? O1 GOL 201 L 1 HETATM 3 C C2 GOL . . . C 3 -2.147 1.663 17.055 1 23.91 ? C2 GOL 201 L 1 HETATM 4 O O2 GOL . . . C 3 -2.516 1.807 15.693 1 23.33 ? O2 GOL 201 L 1 HETATM 5 C C3 GOL . . . C 3 -0.724 1.157 17.021 1 21.73 ? C3 GOL 201 L 1 HETATM 6 O O3 GOL . . . C 3 -0.317 0.894 18.342 1 18.86 ? O3 GOL 201 L 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #