data_4OB5
#
_model_server_result.job_id            lDTtdzGhNXCzblwB2C5lgw 
_model_server_result.datetime_utc      '2024-12-11 07:46:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ob5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4OB5 
#
_exptl.entry_id    4OB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OB5 
_cell.length_a            35.535 
_cell.length_b            48.947 
_cell.length_c            117.272 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf3 B SG CYS 24 L CYS 23 1_555 B SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4OB5 
_atom_sites.fract_transf_matrix[1][1]    0.028141 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02043 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008527 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL L 1 201 1 GOL GOL . 
D 3 GOL L 1 202 2 GOL GOL . 
E 3 GOL L 1 203 3 GOL GOL . 
F 4 TMO L 1 204 1 TMO TMO . 
G 5 HOH H 1 201 9 HOH HOH . 
G 5 HOH H 2 202 11 HOH HOH . 
G 5 HOH H 3 203 13 HOH HOH . 
G 5 HOH H 4 204 16 HOH HOH . 
G 5 HOH H 5 205 30 HOH HOH . 
G 5 HOH H 6 206 31 HOH HOH . 
G 5 HOH H 7 207 33 HOH HOH . 
G 5 HOH H 8 208 37 HOH HOH . 
G 5 HOH H 9 209 42 HOH HOH . 
G 5 HOH H 10 210 47 HOH HOH . 
G 5 HOH H 11 211 48 HOH HOH . 
G 5 HOH H 12 212 52 HOH HOH . 
G 5 HOH H 13 213 55 HOH HOH . 
G 5 HOH H 14 214 58 HOH HOH . 
G 5 HOH H 15 215 62 HOH HOH . 
G 5 HOH H 16 216 63 HOH HOH . 
G 5 HOH H 17 217 68 HOH HOH . 
G 5 HOH H 18 218 70 HOH HOH . 
G 5 HOH H 19 219 71 HOH HOH . 
G 5 HOH H 20 220 76 HOH HOH . 
G 5 HOH H 21 221 81 HOH HOH . 
G 5 HOH H 22 222 83 HOH HOH . 
G 5 HOH H 23 223 84 HOH HOH . 
G 5 HOH H 24 224 85 HOH HOH . 
G 5 HOH H 25 225 86 HOH HOH . 
G 5 HOH H 26 226 91 HOH HOH . 
G 5 HOH H 27 227 94 HOH HOH . 
G 5 HOH H 28 228 102 HOH HOH . 
G 5 HOH H 29 229 104 HOH HOH . 
G 5 HOH H 30 230 107 HOH HOH . 
G 5 HOH H 31 231 108 HOH HOH . 
G 5 HOH H 32 232 109 HOH HOH . 
G 5 HOH H 33 233 111 HOH HOH . 
G 5 HOH H 34 234 112 HOH HOH . 
G 5 HOH H 35 235 113 HOH HOH . 
G 5 HOH H 36 236 114 HOH HOH . 
G 5 HOH H 37 237 115 HOH HOH . 
G 5 HOH H 38 238 116 HOH HOH . 
G 5 HOH H 39 239 117 HOH HOH . 
G 5 HOH H 40 240 120 HOH HOH . 
G 5 HOH H 41 241 122 HOH HOH . 
G 5 HOH H 42 242 123 HOH HOH . 
G 5 HOH H 43 243 124 HOH HOH . 
G 5 HOH H 44 244 131 HOH HOH . 
G 5 HOH H 45 245 132 HOH HOH . 
G 5 HOH H 46 246 134 HOH HOH . 
G 5 HOH H 47 247 137 HOH HOH . 
G 5 HOH H 48 248 139 HOH HOH . 
G 5 HOH H 49 249 141 HOH HOH . 
G 5 HOH H 50 250 144 HOH HOH . 
G 5 HOH H 51 251 145 HOH HOH . 
G 5 HOH H 52 252 147 HOH HOH . 
G 5 HOH H 53 253 148 HOH HOH . 
G 5 HOH H 54 254 151 HOH HOH . 
H 5 HOH L 1 301 1 HOH HOH . 
H 5 HOH L 2 302 2 HOH HOH . 
H 5 HOH L 3 303 4 HOH HOH . 
H 5 HOH L 4 304 5 HOH HOH . 
H 5 HOH L 5 305 6 HOH HOH . 
H 5 HOH L 6 306 7 HOH HOH . 
H 5 HOH L 7 307 8 HOH HOH . 
H 5 HOH L 8 308 10 HOH HOH . 
H 5 HOH L 9 309 14 HOH HOH . 
H 5 HOH L 10 310 17 HOH HOH . 
H 5 HOH L 11 311 18 HOH HOH . 
H 5 HOH L 12 312 19 HOH HOH . 
H 5 HOH L 13 313 21 HOH HOH . 
H 5 HOH L 14 314 24 HOH HOH . 
H 5 HOH L 15 315 25 HOH HOH . 
H 5 HOH L 16 316 26 HOH HOH . 
H 5 HOH L 17 317 27 HOH HOH . 
H 5 HOH L 18 318 28 HOH HOH . 
H 5 HOH L 19 319 29 HOH HOH . 
H 5 HOH L 20 320 32 HOH HOH . 
H 5 HOH L 21 321 34 HOH HOH . 
H 5 HOH L 22 322 35 HOH HOH . 
H 5 HOH L 23 323 36 HOH HOH . 
H 5 HOH L 24 324 38 HOH HOH . 
H 5 HOH L 25 325 39 HOH HOH . 
H 5 HOH L 26 326 40 HOH HOH . 
H 5 HOH L 27 327 41 HOH HOH . 
H 5 HOH L 28 328 43 HOH HOH . 
H 5 HOH L 29 329 44 HOH HOH . 
H 5 HOH L 30 330 45 HOH HOH . 
H 5 HOH L 31 331 46 HOH HOH . 
H 5 HOH L 32 332 49 HOH HOH . 
H 5 HOH L 33 333 50 HOH HOH . 
H 5 HOH L 34 334 51 HOH HOH . 
H 5 HOH L 35 335 53 HOH HOH . 
H 5 HOH L 36 336 54 HOH HOH . 
H 5 HOH L 37 337 56 HOH HOH . 
H 5 HOH L 38 338 57 HOH HOH . 
H 5 HOH L 39 339 59 HOH HOH . 
H 5 HOH L 40 340 60 HOH HOH . 
H 5 HOH L 41 341 61 HOH HOH . 
H 5 HOH L 42 342 64 HOH HOH . 
H 5 HOH L 43 343 65 HOH HOH . 
H 5 HOH L 44 344 66 HOH HOH . 
H 5 HOH L 45 345 67 HOH HOH . 
H 5 HOH L 46 346 69 HOH HOH . 
H 5 HOH L 47 347 72 HOH HOH . 
H 5 HOH L 48 348 73 HOH HOH . 
H 5 HOH L 49 349 74 HOH HOH . 
H 5 HOH L 50 350 75 HOH HOH . 
H 5 HOH L 51 351 77 HOH HOH . 
H 5 HOH L 52 352 78 HOH HOH . 
H 5 HOH L 53 353 79 HOH HOH . 
H 5 HOH L 54 354 80 HOH HOH . 
H 5 HOH L 55 355 87 HOH HOH . 
H 5 HOH L 56 356 88 HOH HOH . 
H 5 HOH L 57 357 89 HOH HOH . 
H 5 HOH L 58 358 92 HOH HOH . 
H 5 HOH L 59 359 93 HOH HOH . 
H 5 HOH L 60 360 95 HOH HOH . 
H 5 HOH L 61 361 96 HOH HOH . 
H 5 HOH L 62 362 97 HOH HOH . 
H 5 HOH L 63 363 98 HOH HOH . 
H 5 HOH L 64 364 99 HOH HOH . 
H 5 HOH L 65 365 100 HOH HOH . 
H 5 HOH L 66 366 101 HOH HOH . 
H 5 HOH L 67 367 103 HOH HOH . 
H 5 HOH L 68 368 105 HOH HOH . 
H 5 HOH L 69 369 106 HOH HOH . 
H 5 HOH L 70 370 110 HOH HOH . 
H 5 HOH L 71 371 118 HOH HOH . 
H 5 HOH L 72 372 119 HOH HOH . 
H 5 HOH L 73 373 121 HOH HOH . 
H 5 HOH L 74 374 125 HOH HOH . 
H 5 HOH L 75 375 126 HOH HOH . 
H 5 HOH L 76 376 128 HOH HOH . 
H 5 HOH L 77 377 129 HOH HOH . 
H 5 HOH L 78 378 130 HOH HOH . 
H 5 HOH L 79 379 133 HOH HOH . 
H 5 HOH L 80 380 135 HOH HOH . 
H 5 HOH L 81 381 136 HOH HOH . 
H 5 HOH L 82 382 138 HOH HOH . 
H 5 HOH L 83 383 140 HOH HOH . 
H 5 HOH L 84 384 142 HOH HOH . 
H 5 HOH L 85 385 143 HOH HOH . 
H 5 HOH L 86 386 146 HOH HOH . 
H 5 HOH L 87 387 149 HOH HOH . 
H 5 HOH L 88 388 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 0.276 8.61 -2.187 1 29.68 ? C1 GOL 202 L 1 
HETATM 2 O O1 GOL . . . D 3 -0.712 9.571 -1.777 1 40.79 ? O1 GOL 202 L 1 
HETATM 3 C C2 GOL . . . D 3 1.53 9.015 -1.44 1 26 ? C2 GOL 202 L 1 
HETATM 4 O O2 GOL . . . D 3 1.569 10.469 -1.34 1 23.4 ? O2 GOL 202 L 1 
HETATM 5 C C3 GOL . . . D 3 1.354 8.442 -0.033 1 23.22 ? C3 GOL 202 L 1 
HETATM 6 O O3 GOL . . . D 3 2.557 8.768 0.664 1 19.18 ? O3 GOL 202 L 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#