data_4OBD # _model_server_result.job_id NnURuMaJltTNI3AAY6l5Kw _model_server_result.datetime_utc '2024-10-09 23:27:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4obd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 4OBD # _exptl.entry_id 4OBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.6 _cell.angle_gamma 90 _cell.entry_id 4OBD _cell.length_a 51.474 _cell.length_b 59.545 _cell.length_c 59.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,J,K,L,O 1 1 C,D,F,I,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 4OBD _atom_sites.fract_transf_matrix[1][1] 0.019427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002938 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GOL B 1 101 1 GOL GOL . H 4 EDO B 1 102 1 EDO EDO . I 4 EDO C 1 101 1 EDO EDO . J 4 EDO E 1 101 1 EDO EDO . K 5 HOH A 1 101 1 HOH HOH . K 5 HOH A 2 102 41 HOH HOH . K 5 HOH A 3 103 55 HOH HOH . K 5 HOH A 4 104 70 HOH HOH . K 5 HOH A 5 105 73 HOH HOH . K 5 HOH A 6 106 78 HOH HOH . K 5 HOH A 7 107 83 HOH HOH . K 5 HOH A 8 108 92 HOH HOH . K 5 HOH A 9 109 97 HOH HOH . K 5 HOH A 10 110 104 HOH HOH . K 5 HOH A 11 111 106 HOH HOH . K 5 HOH A 12 112 115 HOH HOH . K 5 HOH A 13 113 118 HOH HOH . K 5 HOH A 14 114 120 HOH HOH . K 5 HOH A 15 115 121 HOH HOH . K 5 HOH A 16 116 122 HOH HOH . K 5 HOH A 17 117 128 HOH HOH . K 5 HOH A 18 118 132 HOH HOH . K 5 HOH A 19 119 151 HOH HOH . K 5 HOH A 20 120 155 HOH HOH . K 5 HOH A 21 121 158 HOH HOH . K 5 HOH A 22 122 157 HOH HOH . L 5 HOH B 1 201 4 HOH HOH . L 5 HOH B 2 202 5 HOH HOH . L 5 HOH B 3 203 15 HOH HOH . L 5 HOH B 4 204 16 HOH HOH . L 5 HOH B 5 205 20 HOH HOH . L 5 HOH B 6 206 22 HOH HOH . L 5 HOH B 7 207 27 HOH HOH . L 5 HOH B 8 208 37 HOH HOH . L 5 HOH B 9 209 40 HOH HOH . L 5 HOH B 10 210 42 HOH HOH . L 5 HOH B 11 211 43 HOH HOH . L 5 HOH B 12 212 44 HOH HOH . L 5 HOH B 13 213 46 HOH HOH . L 5 HOH B 14 214 51 HOH HOH . L 5 HOH B 15 215 54 HOH HOH . L 5 HOH B 16 216 58 HOH HOH . L 5 HOH B 17 217 60 HOH HOH . L 5 HOH B 18 218 69 HOH HOH . L 5 HOH B 19 219 79 HOH HOH . L 5 HOH B 20 220 80 HOH HOH . L 5 HOH B 21 221 82 HOH HOH . L 5 HOH B 22 222 89 HOH HOH . L 5 HOH B 23 223 98 HOH HOH . L 5 HOH B 24 224 101 HOH HOH . L 5 HOH B 25 225 108 HOH HOH . L 5 HOH B 26 226 111 HOH HOH . L 5 HOH B 27 227 114 HOH HOH . L 5 HOH B 28 228 116 HOH HOH . L 5 HOH B 29 229 126 HOH HOH . L 5 HOH B 30 230 136 HOH HOH . L 5 HOH B 31 231 150 HOH HOH . L 5 HOH B 32 232 159 HOH HOH . M 5 HOH C 1 201 19 HOH HOH . M 5 HOH C 2 202 36 HOH HOH . M 5 HOH C 3 203 45 HOH HOH . M 5 HOH C 4 204 61 HOH HOH . M 5 HOH C 5 205 72 HOH HOH . M 5 HOH C 6 206 109 HOH HOH . M 5 HOH C 7 207 135 HOH HOH . M 5 HOH C 8 208 146 HOH HOH . M 5 HOH C 9 209 160 HOH HOH . M 5 HOH C 10 210 161 HOH HOH . N 5 HOH D 1 101 14 HOH HOH . N 5 HOH D 2 102 39 HOH HOH . N 5 HOH D 3 103 48 HOH HOH . N 5 HOH D 4 104 52 HOH HOH . N 5 HOH D 5 105 53 HOH HOH . N 5 HOH D 6 106 74 HOH HOH . N 5 HOH D 7 107 75 HOH HOH . N 5 HOH D 8 108 84 HOH HOH . N 5 HOH D 9 109 100 HOH HOH . N 5 HOH D 10 110 107 HOH HOH . N 5 HOH D 11 111 123 HOH HOH . N 5 HOH D 12 112 125 HOH HOH . N 5 HOH D 13 113 152 HOH HOH . N 5 HOH D 14 114 162 HOH HOH . N 5 HOH D 15 115 163 HOH HOH . O 5 HOH E 1 201 12 HOH HOH . O 5 HOH E 2 202 18 HOH HOH . P 5 HOH F 1 101 23 HOH HOH . P 5 HOH F 2 102 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -2.792 -14.244 -10.835 1 44.37 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . G 3 -1.542 -13.936 -11.449 1 45.28 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . G 3 -3.875 -14.36 -11.892 1 43.92 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . G 3 -3.548 -13.597 -13.051 1 46.5 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . G 3 -5.208 -13.874 -11.36 1 41.96 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . G 3 -5.499 -12.673 -12.055 1 41.5 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #