data_4OBF
#
_model_server_result.job_id            F0WgYERk-jIvafjr9_AAnQ 
_model_server_result.datetime_utc      '2024-10-09 23:29:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4obf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":101}' 
#
_entry.id    4OBF 
#
_exptl.entry_id    4OBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.25 
_cell.angle_gamma         90 
_cell.entry_id            4OBF 
_cell.length_a            51.547 
_cell.length_b            60.074 
_cell.length_c            60.232 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,I,J,K,L,M,N,V,W,X,AA 1 1 
C,D,F,O,P,Q,R,S,T,U,Y,Z,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 M N N 
? 3 O N N 
? 3 S N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 144 n n 
C1 C2 GOL sing 145 n n 
C1 H11 GOL sing 146 n n 
C1 H12 GOL sing 147 n n 
O1 HO1 GOL sing 148 n n 
C2 O2 GOL sing 149 n n 
C2 C3 GOL sing 150 n n 
C2 H2 GOL sing 151 n n 
O2 HO2 GOL sing 152 n n 
C3 O3 GOL sing 153 n n 
C3 H31 GOL sing 154 n n 
C3 H32 GOL sing 155 n n 
O3 HO3 GOL sing 156 n n 
#
_atom_sites.entry_id                     4OBF 
_atom_sites.fract_transf_matrix[1][1]    0.0194 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003159 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016821 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 GOL A 1 101 4 GOL GOL . 
H 4 EDO A 1 102 1 EDO EDO . 
I 4 EDO A 1 103 6 EDO EDO . 
J 4 EDO A 1 104 7 EDO EDO . 
K 5 PO4 A 1 105 2 PO4 PO4 . 
L 6 ACT A 1 106 1 ACT ACT . 
M 3 GOL B 1 101 2 GOL GOL . 
N 4 EDO B 1 102 2 EDO EDO . 
O 3 GOL C 1 101 1 GOL GOL . 
P 4 EDO C 1 102 3 EDO EDO . 
Q 4 EDO C 1 103 8 EDO EDO . 
R 4 EDO C 1 104 9 EDO EDO . 
S 3 GOL D 1 101 3 GOL GOL . 
T 4 EDO D 1 102 5 EDO EDO . 
U 5 PO4 D 1 103 1 PO4 PO4 . 
V 4 EDO E 1 101 4 EDO EDO . 
W 7 HOH A 1 201 1 HOH HOH . 
W 7 HOH A 2 202 6 HOH HOH . 
W 7 HOH A 3 203 7 HOH HOH . 
W 7 HOH A 4 204 15 HOH HOH . 
W 7 HOH A 5 205 16 HOH HOH . 
W 7 HOH A 6 206 23 HOH HOH . 
W 7 HOH A 7 207 27 HOH HOH . 
W 7 HOH A 8 208 30 HOH HOH . 
W 7 HOH A 9 209 35 HOH HOH . 
W 7 HOH A 10 210 37 HOH HOH . 
W 7 HOH A 11 211 45 HOH HOH . 
W 7 HOH A 12 212 46 HOH HOH . 
W 7 HOH A 13 213 53 HOH HOH . 
W 7 HOH A 14 214 54 HOH HOH . 
W 7 HOH A 15 215 61 HOH HOH . 
W 7 HOH A 16 216 64 HOH HOH . 
W 7 HOH A 17 217 71 HOH HOH . 
W 7 HOH A 18 218 75 HOH HOH . 
W 7 HOH A 19 219 77 HOH HOH . 
W 7 HOH A 20 220 84 HOH HOH . 
W 7 HOH A 21 221 85 HOH HOH . 
W 7 HOH A 22 222 95 HOH HOH . 
W 7 HOH A 23 223 99 HOH HOH . 
W 7 HOH A 24 224 104 HOH HOH . 
W 7 HOH A 25 225 105 HOH HOH . 
W 7 HOH A 26 226 106 HOH HOH . 
W 7 HOH A 27 227 107 HOH HOH . 
W 7 HOH A 28 228 110 HOH HOH . 
W 7 HOH A 29 229 117 HOH HOH . 
W 7 HOH A 30 230 120 HOH HOH . 
W 7 HOH A 31 231 127 HOH HOH . 
W 7 HOH A 32 232 128 HOH HOH . 
W 7 HOH A 33 233 132 HOH HOH . 
W 7 HOH A 34 234 133 HOH HOH . 
W 7 HOH A 35 235 134 HOH HOH . 
W 7 HOH A 36 236 135 HOH HOH . 
W 7 HOH A 37 237 137 HOH HOH . 
W 7 HOH A 38 238 140 HOH HOH . 
W 7 HOH A 39 239 142 HOH HOH . 
W 7 HOH A 40 240 144 HOH HOH . 
W 7 HOH A 41 241 145 HOH HOH . 
W 7 HOH A 42 242 146 HOH HOH . 
W 7 HOH A 43 243 155 HOH HOH . 
W 7 HOH A 44 244 156 HOH HOH . 
W 7 HOH A 45 245 167 HOH HOH . 
W 7 HOH A 46 246 169 HOH HOH . 
W 7 HOH A 47 247 170 HOH HOH . 
W 7 HOH A 48 248 171 HOH HOH . 
X 7 HOH B 1 201 2 HOH HOH . 
X 7 HOH B 2 202 4 HOH HOH . 
X 7 HOH B 3 203 8 HOH HOH . 
X 7 HOH B 4 204 10 HOH HOH . 
X 7 HOH B 5 205 18 HOH HOH . 
X 7 HOH B 6 206 19 HOH HOH . 
X 7 HOH B 7 207 20 HOH HOH . 
X 7 HOH B 8 208 26 HOH HOH . 
X 7 HOH B 9 209 29 HOH HOH . 
X 7 HOH B 10 210 32 HOH HOH . 
X 7 HOH B 11 211 34 HOH HOH . 
X 7 HOH B 12 212 39 HOH HOH . 
X 7 HOH B 13 213 41 HOH HOH . 
X 7 HOH B 14 214 42 HOH HOH . 
X 7 HOH B 15 215 44 HOH HOH . 
X 7 HOH B 16 216 55 HOH HOH . 
X 7 HOH B 17 217 58 HOH HOH . 
X 7 HOH B 18 218 59 HOH HOH . 
X 7 HOH B 19 219 60 HOH HOH . 
X 7 HOH B 20 220 62 HOH HOH . 
X 7 HOH B 21 221 68 HOH HOH . 
X 7 HOH B 22 222 70 HOH HOH . 
X 7 HOH B 23 223 72 HOH HOH . 
X 7 HOH B 24 224 73 HOH HOH . 
X 7 HOH B 25 225 74 HOH HOH . 
X 7 HOH B 26 226 76 HOH HOH . 
X 7 HOH B 27 227 79 HOH HOH . 
X 7 HOH B 28 228 80 HOH HOH . 
X 7 HOH B 29 229 81 HOH HOH . 
X 7 HOH B 30 230 89 HOH HOH . 
X 7 HOH B 31 231 90 HOH HOH . 
X 7 HOH B 32 232 96 HOH HOH . 
X 7 HOH B 33 233 109 HOH HOH . 
X 7 HOH B 34 234 111 HOH HOH . 
X 7 HOH B 35 235 115 HOH HOH . 
X 7 HOH B 36 236 116 HOH HOH . 
X 7 HOH B 37 237 118 HOH HOH . 
X 7 HOH B 38 238 124 HOH HOH . 
X 7 HOH B 39 239 131 HOH HOH . 
X 7 HOH B 40 240 136 HOH HOH . 
X 7 HOH B 41 241 138 HOH HOH . 
X 7 HOH B 42 242 147 HOH HOH . 
X 7 HOH B 43 243 148 HOH HOH . 
X 7 HOH B 44 244 149 HOH HOH . 
X 7 HOH B 45 245 150 HOH HOH . 
X 7 HOH B 46 246 151 HOH HOH . 
X 7 HOH B 47 247 157 HOH HOH . 
X 7 HOH B 48 248 158 HOH HOH . 
X 7 HOH B 49 249 159 HOH HOH . 
X 7 HOH B 50 250 160 HOH HOH . 
X 7 HOH B 51 251 172 HOH HOH . 
X 7 HOH B 52 252 180 HOH HOH . 
X 7 HOH B 53 253 183 HOH HOH . 
X 7 HOH B 54 254 174 HOH HOH . 
Y 7 HOH C 1 201 5 HOH HOH . 
Y 7 HOH C 2 202 11 HOH HOH . 
Y 7 HOH C 3 203 21 HOH HOH . 
Y 7 HOH C 4 204 24 HOH HOH . 
Y 7 HOH C 5 205 47 HOH HOH . 
Y 7 HOH C 6 206 48 HOH HOH . 
Y 7 HOH C 7 207 51 HOH HOH . 
Y 7 HOH C 8 208 66 HOH HOH . 
Y 7 HOH C 9 209 67 HOH HOH . 
Y 7 HOH C 10 210 78 HOH HOH . 
Y 7 HOH C 11 211 83 HOH HOH . 
Y 7 HOH C 12 212 91 HOH HOH . 
Y 7 HOH C 13 213 93 HOH HOH . 
Y 7 HOH C 14 214 94 HOH HOH . 
Y 7 HOH C 15 215 97 HOH HOH . 
Y 7 HOH C 16 216 102 HOH HOH . 
Y 7 HOH C 17 217 103 HOH HOH . 
Y 7 HOH C 18 218 112 HOH HOH . 
Y 7 HOH C 19 219 125 HOH HOH . 
Y 7 HOH C 20 220 129 HOH HOH . 
Y 7 HOH C 21 221 153 HOH HOH . 
Y 7 HOH C 22 222 154 HOH HOH . 
Y 7 HOH C 23 223 165 HOH HOH . 
Y 7 HOH C 24 224 166 HOH HOH . 
Y 7 HOH C 25 225 168 HOH HOH . 
Y 7 HOH C 26 226 177 HOH HOH . 
Y 7 HOH C 27 227 178 HOH HOH . 
Y 7 HOH C 28 228 179 HOH HOH . 
Y 7 HOH C 29 229 186 HOH HOH . 
Z 7 HOH D 1 201 12 HOH HOH . 
Z 7 HOH D 2 202 13 HOH HOH . 
Z 7 HOH D 3 203 14 HOH HOH . 
Z 7 HOH D 4 204 17 HOH HOH . 
Z 7 HOH D 5 205 22 HOH HOH . 
Z 7 HOH D 6 206 25 HOH HOH . 
Z 7 HOH D 7 207 31 HOH HOH . 
Z 7 HOH D 8 208 33 HOH HOH . 
Z 7 HOH D 9 209 36 HOH HOH . 
Z 7 HOH D 10 210 40 HOH HOH . 
Z 7 HOH D 11 211 43 HOH HOH . 
Z 7 HOH D 12 212 49 HOH HOH . 
Z 7 HOH D 13 213 50 HOH HOH . 
Z 7 HOH D 14 214 63 HOH HOH . 
Z 7 HOH D 15 215 65 HOH HOH . 
Z 7 HOH D 16 216 69 HOH HOH . 
Z 7 HOH D 17 217 86 HOH HOH . 
Z 7 HOH D 18 218 88 HOH HOH . 
Z 7 HOH D 19 219 92 HOH HOH . 
Z 7 HOH D 20 220 98 HOH HOH . 
Z 7 HOH D 21 221 100 HOH HOH . 
Z 7 HOH D 22 222 101 HOH HOH . 
Z 7 HOH D 23 223 108 HOH HOH . 
Z 7 HOH D 24 224 113 HOH HOH . 
Z 7 HOH D 25 225 114 HOH HOH . 
Z 7 HOH D 26 226 119 HOH HOH . 
Z 7 HOH D 27 227 121 HOH HOH . 
Z 7 HOH D 28 228 123 HOH HOH . 
Z 7 HOH D 29 229 126 HOH HOH . 
Z 7 HOH D 30 230 139 HOH HOH . 
Z 7 HOH D 31 231 141 HOH HOH . 
Z 7 HOH D 32 232 143 HOH HOH . 
Z 7 HOH D 33 233 152 HOH HOH . 
Z 7 HOH D 34 234 161 HOH HOH . 
Z 7 HOH D 35 235 162 HOH HOH . 
Z 7 HOH D 36 236 163 HOH HOH . 
Z 7 HOH D 37 237 164 HOH HOH . 
Z 7 HOH D 38 238 173 HOH HOH . 
Z 7 HOH D 39 239 175 HOH HOH . 
Z 7 HOH D 40 240 176 HOH HOH . 
Z 7 HOH D 41 241 182 HOH HOH . 
Z 7 HOH D 42 242 184 HOH HOH . 
Z 7 HOH D 43 243 185 HOH HOH . 
Z 7 HOH D 44 244 187 HOH HOH . 
Z 7 HOH D 45 245 188 HOH HOH . 
AA 7 HOH E 1 201 3 HOH HOH . 
AA 7 HOH E 2 202 9 HOH HOH . 
AA 7 HOH E 3 203 28 HOH HOH . 
AA 7 HOH E 4 204 52 HOH HOH . 
AA 7 HOH E 5 205 56 HOH HOH . 
AA 7 HOH E 6 206 57 HOH HOH . 
AA 7 HOH E 7 207 82 HOH HOH . 
AA 7 HOH E 8 208 87 HOH HOH . 
AA 7 HOH E 9 209 122 HOH HOH . 
AA 7 HOH E 10 210 130 HOH HOH . 
BA 7 HOH F 1 101 38 HOH HOH . 
BA 7 HOH F 2 102 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . S 3 -39.25 -12.877 -35.967 1 45.62 ? C1 GOL 101 D 1 
HETATM 2 O O1 GOL . . . S 3 -38.244 -13.757 -35.464 1 43.72 ? O1 GOL 101 D 1 
HETATM 3 C C2 GOL . . . S 3 -40.632 -13.031 -35.327 1 46.28 ? C2 GOL 101 D 1 
HETATM 4 O O2 GOL . . . S 3 -41.562 -13.694 -36.153 1 44.9 ? O2 GOL 101 D 1 
HETATM 5 C C3 GOL . . . S 3 -40.587 -13.844 -34.048 1 47.73 ? C3 GOL 101 D 1 
HETATM 6 O O3 GOL . . . S 3 -41.856 -13.764 -33.447 1 50.5 ? O3 GOL 101 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#