data_4OBK # _model_server_result.job_id qlYjBxcL1emKDydJbpB-nA _model_server_result.datetime_utc '2024-10-09 23:24:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4obk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":102}' # _entry.id 4OBK # _exptl.entry_id 4OBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OBK _cell.length_a 50.945 _cell.length_b 58.412 _cell.length_c 61.457 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 4OBK _atom_sites.fract_transf_matrix[1][1] 0.019629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 101 1 GOL GOL . E 4 EDO A 1 102 1 EDO EDO . F 5 ACT A 1 103 1 ACT ACT . G 3 GOL B 1 101 1 GOL GOL . H 3 GOL B 1 102 1 GOL GOL . I 6 HOH A 1 201 2 HOH HOH . I 6 HOH A 2 202 4 HOH HOH . I 6 HOH A 3 203 12 HOH HOH . I 6 HOH A 4 204 14 HOH HOH . I 6 HOH A 5 205 15 HOH HOH . I 6 HOH A 6 206 16 HOH HOH . I 6 HOH A 7 207 17 HOH HOH . I 6 HOH A 8 208 18 HOH HOH . I 6 HOH A 9 209 19 HOH HOH . I 6 HOH A 10 210 22 HOH HOH . I 6 HOH A 11 211 23 HOH HOH . I 6 HOH A 12 212 29 HOH HOH . I 6 HOH A 13 213 32 HOH HOH . I 6 HOH A 14 214 34 HOH HOH . I 6 HOH A 15 215 35 HOH HOH . I 6 HOH A 16 216 36 HOH HOH . I 6 HOH A 17 217 39 HOH HOH . I 6 HOH A 18 218 42 HOH HOH . I 6 HOH A 19 219 46 HOH HOH . I 6 HOH A 20 220 47 HOH HOH . I 6 HOH A 21 221 54 HOH HOH . I 6 HOH A 22 222 59 HOH HOH . I 6 HOH A 23 223 63 HOH HOH . I 6 HOH A 24 224 68 HOH HOH . I 6 HOH A 25 225 69 HOH HOH . I 6 HOH A 26 226 70 HOH HOH . I 6 HOH A 27 227 75 HOH HOH . I 6 HOH A 28 228 76 HOH HOH . I 6 HOH A 29 229 77 HOH HOH . I 6 HOH A 30 230 78 HOH HOH . I 6 HOH A 31 231 83 HOH HOH . I 6 HOH A 32 232 86 HOH HOH . I 6 HOH A 33 233 88 HOH HOH . I 6 HOH A 34 234 90 HOH HOH . I 6 HOH A 35 235 91 HOH HOH . I 6 HOH A 36 236 92 HOH HOH . I 6 HOH A 37 237 95 HOH HOH . I 6 HOH A 38 238 97 HOH HOH . I 6 HOH A 39 239 99 HOH HOH . I 6 HOH A 40 240 105 HOH HOH . I 6 HOH A 41 241 107 HOH HOH . I 6 HOH A 42 242 108 HOH HOH . I 6 HOH A 43 243 109 HOH HOH . I 6 HOH A 44 244 110 HOH HOH . I 6 HOH A 45 245 112 HOH HOH . I 6 HOH A 46 246 116 HOH HOH . I 6 HOH A 47 247 123 HOH HOH . I 6 HOH A 48 248 130 HOH HOH . I 6 HOH A 49 249 132 HOH HOH . I 6 HOH A 50 250 133 HOH HOH . I 6 HOH A 51 251 134 HOH HOH . I 6 HOH A 52 252 151 HOH HOH . I 6 HOH A 53 253 153 HOH HOH . I 6 HOH A 54 254 156 HOH HOH . I 6 HOH A 55 255 157 HOH HOH . I 6 HOH A 56 256 164 HOH HOH . I 6 HOH A 57 257 165 HOH HOH . I 6 HOH A 58 258 170 HOH HOH . I 6 HOH A 59 259 171 HOH HOH . I 6 HOH A 60 260 175 HOH HOH . I 6 HOH A 61 261 176 HOH HOH . I 6 HOH A 62 262 177 HOH HOH . I 6 HOH A 63 263 178 HOH HOH . I 6 HOH A 64 264 179 HOH HOH . I 6 HOH A 65 265 183 HOH HOH . I 6 HOH A 66 266 184 HOH HOH . I 6 HOH A 67 267 185 HOH HOH . I 6 HOH A 68 268 186 HOH HOH . I 6 HOH A 69 269 187 HOH HOH . I 6 HOH A 70 270 188 HOH HOH . I 6 HOH A 71 271 199 HOH HOH . I 6 HOH A 72 272 203 HOH HOH . I 6 HOH A 73 273 206 HOH HOH . J 6 HOH B 1 201 6 HOH HOH . J 6 HOH B 2 202 7 HOH HOH . J 6 HOH B 3 203 8 HOH HOH . J 6 HOH B 4 204 13 HOH HOH . J 6 HOH B 5 205 21 HOH HOH . J 6 HOH B 6 206 27 HOH HOH . J 6 HOH B 7 207 28 HOH HOH . J 6 HOH B 8 208 33 HOH HOH . J 6 HOH B 9 209 38 HOH HOH . J 6 HOH B 10 210 40 HOH HOH . J 6 HOH B 11 211 41 HOH HOH . J 6 HOH B 12 212 44 HOH HOH . J 6 HOH B 13 213 45 HOH HOH . J 6 HOH B 14 214 51 HOH HOH . J 6 HOH B 15 215 52 HOH HOH . J 6 HOH B 16 216 53 HOH HOH . J 6 HOH B 17 217 55 HOH HOH . J 6 HOH B 18 218 62 HOH HOH . J 6 HOH B 19 219 65 HOH HOH . J 6 HOH B 20 220 67 HOH HOH . J 6 HOH B 21 221 72 HOH HOH . J 6 HOH B 22 222 73 HOH HOH . J 6 HOH B 23 223 80 HOH HOH . J 6 HOH B 24 224 84 HOH HOH . J 6 HOH B 25 225 85 HOH HOH . J 6 HOH B 26 226 87 HOH HOH . J 6 HOH B 27 227 89 HOH HOH . J 6 HOH B 28 228 93 HOH HOH . J 6 HOH B 29 229 94 HOH HOH . J 6 HOH B 30 230 96 HOH HOH . J 6 HOH B 31 231 98 HOH HOH . J 6 HOH B 32 232 101 HOH HOH . J 6 HOH B 33 233 102 HOH HOH . J 6 HOH B 34 234 104 HOH HOH . J 6 HOH B 35 235 106 HOH HOH . J 6 HOH B 36 236 113 HOH HOH . J 6 HOH B 37 237 117 HOH HOH . J 6 HOH B 38 238 126 HOH HOH . J 6 HOH B 39 239 128 HOH HOH . J 6 HOH B 40 240 136 HOH HOH . J 6 HOH B 41 241 139 HOH HOH . J 6 HOH B 42 242 140 HOH HOH . J 6 HOH B 43 243 141 HOH HOH . J 6 HOH B 44 244 143 HOH HOH . J 6 HOH B 45 245 145 HOH HOH . J 6 HOH B 46 246 146 HOH HOH . J 6 HOH B 47 247 148 HOH HOH . J 6 HOH B 48 248 150 HOH HOH . J 6 HOH B 49 249 154 HOH HOH . J 6 HOH B 50 250 162 HOH HOH . J 6 HOH B 51 251 169 HOH HOH . J 6 HOH B 52 252 174 HOH HOH . J 6 HOH B 53 253 180 HOH HOH . J 6 HOH B 54 254 181 HOH HOH . J 6 HOH B 55 255 189 HOH HOH . J 6 HOH B 56 256 190 HOH HOH . J 6 HOH B 57 257 191 HOH HOH . J 6 HOH B 58 258 192 HOH HOH . J 6 HOH B 59 259 193 HOH HOH . J 6 HOH B 60 260 194 HOH HOH . J 6 HOH B 61 261 195 HOH HOH . J 6 HOH B 62 262 196 HOH HOH . J 6 HOH B 63 263 197 HOH HOH . J 6 HOH B 64 264 201 HOH HOH . J 6 HOH B 65 265 202 HOH HOH . J 6 HOH B 66 266 205 HOH HOH . K 6 HOH C 1 101 5 HOH HOH . K 6 HOH C 2 102 71 HOH HOH . K 6 HOH C 3 103 121 HOH HOH . K 6 HOH C 4 104 182 HOH HOH . K 6 HOH C 5 105 204 HOH HOH . K 6 HOH C 6 106 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 3.912 9.225 19.427 1 36.42 ? C1 GOL 102 B 1 HETATM 2 O O1 GOL . . . H 3 4.538 10.49 19.158 1 35.88 ? O1 GOL 102 B 1 HETATM 3 C C2 GOL . . . H 3 5.035 8.225 19.629 1 35.97 ? C2 GOL 102 B 1 HETATM 4 O O2 GOL . . . H 3 6.158 8.799 18.985 1 38.18 ? O2 GOL 102 B 1 HETATM 5 C C3 GOL . . . H 3 4.748 6.884 18.967 1 35.09 ? C3 GOL 102 B 1 HETATM 6 O O3 GOL . . . H 3 4.984 5.718 19.769 1 31.51 ? O3 GOL 102 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #