data_4OBS # _model_server_result.job_id gFSA0IOwAHJgFGKbB6wqtQ _model_server_result.datetime_utc '2024-11-01 07:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4obs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":909}' # _entry.id 4OBS # _exptl.entry_id 4OBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OBS _cell.length_a 72.64 _cell.length_b 78.03 _cell.length_c 112.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 991 NAG 2 n B NAG 2 B 2 NAG B 992 NAG 2 n B BMA 3 B 3 BMA B 993 BMA 2 n B MAN 4 B 4 MAN B 995 MAN 2 n B MAN 5 B 5 MAN B 996 MAN 2 n B MAN 6 B 6 MAN B 994 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 515 A CYS 541 1_555 A SG CYS 551 A CYS 577 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 84 A ASN 110 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 346 A ASN 372 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 389 A ASN 415 1_555 D C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 4OBS _atom_sites.fract_transf_matrix[1][1] 0.013767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 901 901 NAG NAG . D 3 NAG A 1 902 951 NAG NAG . E 4 GOL A 1 909 1 GOL GOL . F 4 GOL A 1 910 2 GOL GOL . G 4 GOL A 1 911 3 GOL GOL . H 4 GOL A 1 912 4 GOL GOL . I 4 GOL A 1 913 5 GOL GOL . J 4 GOL A 1 914 6 GOL GOL . K 5 CL A 1 915 1 CL CL . L 6 SO4 A 1 916 1 SO4 SO4 . M 7 HOH A 1 1001 2 HOH HOH . M 7 HOH A 2 1002 3 HOH HOH . M 7 HOH A 3 1003 4 HOH HOH . M 7 HOH A 4 1004 5 HOH HOH . M 7 HOH A 5 1005 6 HOH HOH . M 7 HOH A 6 1006 7 HOH HOH . M 7 HOH A 7 1007 8 HOH HOH . M 7 HOH A 8 1008 9 HOH HOH . M 7 HOH A 9 1009 10 HOH HOH . M 7 HOH A 10 1010 11 HOH HOH . M 7 HOH A 11 1011 12 HOH HOH . M 7 HOH A 12 1012 13 HOH HOH . M 7 HOH A 13 1013 14 HOH HOH . M 7 HOH A 14 1014 15 HOH HOH . M 7 HOH A 15 1015 16 HOH HOH . M 7 HOH A 16 1016 17 HOH HOH . M 7 HOH A 17 1017 18 HOH HOH . M 7 HOH A 18 1018 19 HOH HOH . M 7 HOH A 19 1019 20 HOH HOH . M 7 HOH A 20 1020 21 HOH HOH . M 7 HOH A 21 1021 22 HOH HOH . M 7 HOH A 22 1022 23 HOH HOH . M 7 HOH A 23 1023 24 HOH HOH . M 7 HOH A 24 1024 25 HOH HOH . M 7 HOH A 25 1025 26 HOH HOH . M 7 HOH A 26 1026 27 HOH HOH . M 7 HOH A 27 1027 28 HOH HOH . M 7 HOH A 28 1028 29 HOH HOH . M 7 HOH A 29 1029 30 HOH HOH . M 7 HOH A 30 1030 31 HOH HOH . M 7 HOH A 31 1031 32 HOH HOH . M 7 HOH A 32 1032 33 HOH HOH . M 7 HOH A 33 1033 34 HOH HOH . M 7 HOH A 34 1034 35 HOH HOH . M 7 HOH A 35 1035 36 HOH HOH . M 7 HOH A 36 1036 38 HOH HOH . M 7 HOH A 37 1037 39 HOH HOH . M 7 HOH A 38 1038 40 HOH HOH . M 7 HOH A 39 1039 41 HOH HOH . M 7 HOH A 40 1040 42 HOH HOH . M 7 HOH A 41 1041 43 HOH HOH . M 7 HOH A 42 1042 44 HOH HOH . M 7 HOH A 43 1043 45 HOH HOH . M 7 HOH A 44 1044 46 HOH HOH . M 7 HOH A 45 1045 49 HOH HOH . M 7 HOH A 46 1046 50 HOH HOH . M 7 HOH A 47 1047 51 HOH HOH . M 7 HOH A 48 1048 52 HOH HOH . M 7 HOH A 49 1049 53 HOH HOH . M 7 HOH A 50 1050 54 HOH HOH . M 7 HOH A 51 1051 55 HOH HOH . M 7 HOH A 52 1052 56 HOH HOH . M 7 HOH A 53 1053 57 HOH HOH . M 7 HOH A 54 1054 58 HOH HOH . M 7 HOH A 55 1055 59 HOH HOH . M 7 HOH A 56 1056 60 HOH HOH . M 7 HOH A 57 1057 61 HOH HOH . M 7 HOH A 58 1058 62 HOH HOH . M 7 HOH A 59 1059 63 HOH HOH . M 7 HOH A 60 1060 64 HOH HOH . M 7 HOH A 61 1061 65 HOH HOH . M 7 HOH A 62 1062 66 HOH HOH . M 7 HOH A 63 1063 69 HOH HOH . M 7 HOH A 64 1064 70 HOH HOH . M 7 HOH A 65 1065 71 HOH HOH . M 7 HOH A 66 1066 72 HOH HOH . M 7 HOH A 67 1067 73 HOH HOH . M 7 HOH A 68 1068 74 HOH HOH . M 7 HOH A 69 1069 75 HOH HOH . M 7 HOH A 70 1070 76 HOH HOH . M 7 HOH A 71 1071 77 HOH HOH . M 7 HOH A 72 1072 78 HOH HOH . M 7 HOH A 73 1073 80 HOH HOH . M 7 HOH A 74 1074 81 HOH HOH . M 7 HOH A 75 1075 82 HOH HOH . M 7 HOH A 76 1076 83 HOH HOH . M 7 HOH A 77 1077 84 HOH HOH . M 7 HOH A 78 1078 86 HOH HOH . M 7 HOH A 79 1079 87 HOH HOH . M 7 HOH A 80 1080 88 HOH HOH . M 7 HOH A 81 1081 89 HOH HOH . M 7 HOH A 82 1082 90 HOH HOH . M 7 HOH A 83 1083 91 HOH HOH . M 7 HOH A 84 1084 92 HOH HOH . M 7 HOH A 85 1085 93 HOH HOH . M 7 HOH A 86 1086 94 HOH HOH . M 7 HOH A 87 1087 95 HOH HOH . M 7 HOH A 88 1088 96 HOH HOH . M 7 HOH A 89 1089 97 HOH HOH . M 7 HOH A 90 1090 98 HOH HOH . M 7 HOH A 91 1091 99 HOH HOH . M 7 HOH A 92 1092 100 HOH HOH . M 7 HOH A 93 1093 101 HOH HOH . M 7 HOH A 94 1094 102 HOH HOH . M 7 HOH A 95 1095 103 HOH HOH . M 7 HOH A 96 1096 104 HOH HOH . M 7 HOH A 97 1097 105 HOH HOH . M 7 HOH A 98 1098 106 HOH HOH . M 7 HOH A 99 1099 107 HOH HOH . M 7 HOH A 100 1100 108 HOH HOH . M 7 HOH A 101 1101 109 HOH HOH . M 7 HOH A 102 1102 111 HOH HOH . M 7 HOH A 103 1103 112 HOH HOH . M 7 HOH A 104 1104 113 HOH HOH . M 7 HOH A 105 1105 114 HOH HOH . M 7 HOH A 106 1106 115 HOH HOH . M 7 HOH A 107 1107 116 HOH HOH . M 7 HOH A 108 1108 118 HOH HOH . M 7 HOH A 109 1109 119 HOH HOH . M 7 HOH A 110 1110 124 HOH HOH . M 7 HOH A 111 1111 129 HOH HOH . M 7 HOH A 112 1112 130 HOH HOH . M 7 HOH A 113 1113 131 HOH HOH . M 7 HOH A 114 1114 132 HOH HOH . M 7 HOH A 115 1115 133 HOH HOH . M 7 HOH A 116 1116 134 HOH HOH . M 7 HOH A 117 1117 135 HOH HOH . M 7 HOH A 118 1118 136 HOH HOH . M 7 HOH A 119 1119 137 HOH HOH . M 7 HOH A 120 1120 138 HOH HOH . M 7 HOH A 121 1121 139 HOH HOH . M 7 HOH A 122 1122 140 HOH HOH . M 7 HOH A 123 1123 141 HOH HOH . M 7 HOH A 124 1124 142 HOH HOH . M 7 HOH A 125 1125 143 HOH HOH . M 7 HOH A 126 1126 144 HOH HOH . M 7 HOH A 127 1127 145 HOH HOH . M 7 HOH A 128 1128 146 HOH HOH . M 7 HOH A 129 1129 147 HOH HOH . M 7 HOH A 130 1130 148 HOH HOH . M 7 HOH A 131 1131 149 HOH HOH . M 7 HOH A 132 1132 150 HOH HOH . M 7 HOH A 133 1133 151 HOH HOH . M 7 HOH A 134 1134 152 HOH HOH . M 7 HOH A 135 1135 153 HOH HOH . M 7 HOH A 136 1136 154 HOH HOH . M 7 HOH A 137 1137 155 HOH HOH . M 7 HOH A 138 1138 156 HOH HOH . M 7 HOH A 139 1139 157 HOH HOH . M 7 HOH A 140 1140 158 HOH HOH . M 7 HOH A 141 1141 159 HOH HOH . M 7 HOH A 142 1142 160 HOH HOH . M 7 HOH A 143 1143 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -22.271 -16.865 -7.444 1 31.89 ? C1 GOL 909 A 1 HETATM 2 O O1 GOL . . . E 4 -21.587 -16.426 -6.266 1 32.59 ? O1 GOL 909 A 1 HETATM 3 C C2 GOL . . . E 4 -23.654 -17.393 -7.075 1 31.36 ? C2 GOL 909 A 1 HETATM 4 O O2 GOL . . . E 4 -23.538 -18.752 -6.649 1 29.77 ? O2 GOL 909 A 1 HETATM 5 C C3 GOL . . . E 4 -24.275 -16.547 -5.965 1 30.43 ? C3 GOL 909 A 1 HETATM 6 O O3 GOL . . . E 4 -25.661 -16.864 -5.799 1 29.63 ? O3 GOL 909 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #