data_4OBV # _model_server_result.job_id SXEFf7P9A8eDl80Gz-EpFg _model_server_result.datetime_utc '2025-02-05 10:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4obv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 4OBV # _exptl.entry_id 4OBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.338 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{5-hydroxy-4-[(1E)-4-(1H-indol-3-yl)-3-oxobut-1-en-1-yl]-6-methylpyridin-3-yl}methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OBV _cell.length_a 135.03 _cell.length_b 135.03 _cell.length_c 249.8 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H,I 1 1 B,D,G,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C19 H19 N2 O6 P' _chem_comp.formula_weight 402.338 _chem_comp.id 3SO _chem_comp.mon_nstd_flag . _chem_comp.name '{5-hydroxy-4-[(1E)-4-(1H-indol-3-yl)-3-oxobut-1-en-1-yl]-6-methylpyridin-3-yl}methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 P09 3SO doub 32 n n O12 P09 3SO sing 33 n n P09 O11 3SO sing 34 n n P09 O08 3SO sing 35 n n C05 N04 3SO doub 36 n y C05 C06 3SO sing 37 n y C07 O08 3SO sing 38 n n C07 C06 3SO sing 39 n n N04 C03 3SO sing 40 n y C06 C13 3SO doub 41 n y C03 C28 3SO sing 42 n n C03 C02 3SO doub 43 n y C13 C02 3SO sing 44 n y C13 C14 3SO sing 45 n n C02 O01 3SO sing 46 n n C14 C15 3SO doub 47 e n C15 C16 3SO sing 48 n n C17 C16 3SO sing 49 n n C17 C18 3SO sing 50 n n C19 C18 3SO doub 51 n y C19 N20 3SO sing 52 n y C16 O27 3SO doub 53 n n C18 C22 3SO sing 54 n y N20 C21 3SO sing 55 n y C22 C21 3SO doub 56 n y C22 C23 3SO sing 57 n y C21 C26 3SO sing 58 n y C23 C24 3SO doub 59 n y C26 C25 3SO doub 60 n y C24 C25 3SO sing 61 n y O01 H1 3SO sing 62 n n C05 H2 3SO sing 63 n n C07 H3 3SO sing 64 n n C07 H4 3SO sing 65 n n O11 H5 3SO sing 66 n n O12 H6 3SO sing 67 n n C14 H7 3SO sing 68 n n C15 H8 3SO sing 69 n n C17 H9 3SO sing 70 n n C17 H10 3SO sing 71 n n C19 H11 3SO sing 72 n n N20 H12 3SO sing 73 n n C23 H13 3SO sing 74 n n C24 H14 3SO sing 75 n n C25 H15 3SO sing 76 n n C26 H16 3SO sing 77 n n C28 H17 3SO sing 78 n n C28 H18 3SO sing 79 n n C28 H19 3SO sing 80 n n # _atom_sites.entry_id 4OBV _atom_sites.fract_transf_matrix[1][1] 0.007406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2SU D 1 501 1 2SU 2SU . F 3 3SO D 1 502 1 3SO EXT . G 2 2SU C 1 501 2 2SU 2SU . H 2 2SU B 1 501 3 2SU 2SU . I 3 3SO B 1 502 1 3SO EXT . J 3 3SO A 1 501 1 3SO EXT . K 2 2SU A 1 502 4 2SU 2SU . L 3 3SO A 1 503 1 3SO EXT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 3SO . . . J 3 172.75 148.293 40.861 0.71 20 ? O01 3SO 501 A 1 HETATM 2 C C02 3SO . . . J 3 173.282 147.701 39.815 0.71 20 ? C02 3SO 501 A 1 HETATM 3 C C03 3SO . . . J 3 174.294 148.345 39.146 0.71 20 ? C03 3SO 501 A 1 HETATM 4 N N04 3SO . . . J 3 174.848 147.728 38.067 0.71 20 1 N04 3SO 501 A 1 HETATM 5 C C05 3SO . . . J 3 174.426 146.515 37.635 0.71 20 ? C05 3SO 501 A 1 HETATM 6 C C06 3SO . . . J 3 173.41 145.861 38.313 0.71 20 ? C06 3SO 501 A 1 HETATM 7 C C07 3SO . . . J 3 173.075 144.488 37.697 0.71 20 ? C07 3SO 501 A 1 HETATM 8 O O08 3SO . . . J 3 171.904 144.113 38.06 0.71 20 ? O08 3SO 501 A 1 HETATM 9 P P09 3SO . . . J 3 170.772 143.338 36.907 0.71 20 ? P09 3SO 501 A 1 HETATM 10 O O10 3SO . . . J 3 170.362 144.535 36.143 0.71 20 -1 O10 3SO 501 A 1 HETATM 11 O O11 3SO . . . J 3 169.823 142.695 37.852 0.71 20 -1 O11 3SO 501 A 1 HETATM 12 O O12 3SO . . . J 3 171.805 142.46 36.325 0.71 20 ? O12 3SO 501 A 1 HETATM 13 C C13 3SO . . . J 3 172.786 146.437 39.42 0.71 20 ? C13 3SO 501 A 1 HETATM 14 C C14 3SO . . . J 3 171.734 145.823 40.222 0.71 20 ? C14 3SO 501 A 1 HETATM 15 C C15 3SO . . . J 3 171.712 145.83 41.526 0.71 20 ? C15 3SO 501 A 1 HETATM 16 C C16 3SO . . . J 3 170.787 145.259 42.497 0.71 20 ? C16 3SO 501 A 1 HETATM 17 C C17 3SO . . . J 3 170.31 143.839 42.364 0.71 20 ? C17 3SO 501 A 1 HETATM 18 C C18 3SO . . . J 3 168.92 143.517 42.736 0.71 20 ? C18 3SO 501 A 1 HETATM 19 C C19 3SO . . . J 3 167.873 144.317 42.403 0.71 20 ? C19 3SO 501 A 1 HETATM 20 N N20 3SO . . . J 3 166.704 143.758 42.878 0.71 20 ? N20 3SO 501 A 1 HETATM 21 C C21 3SO . . . J 3 167 142.58 43.537 0.71 20 ? C21 3SO 501 A 1 HETATM 22 C C22 3SO . . . J 3 168.364 142.398 43.467 0.71 20 ? C22 3SO 501 A 1 HETATM 23 C C23 3SO . . . J 3 168.847 141.239 44.095 0.71 20 ? C23 3SO 501 A 1 HETATM 24 C C24 3SO . . . J 3 168.038 140.34 44.725 0.71 20 ? C24 3SO 501 A 1 HETATM 25 C C25 3SO . . . J 3 166.673 140.549 44.782 0.71 20 ? C25 3SO 501 A 1 HETATM 26 C C26 3SO . . . J 3 166.149 141.663 44.198 0.71 20 ? C26 3SO 501 A 1 HETATM 27 O O27 3SO . . . J 3 170.474 145.896 43.464 0.71 20 ? O27 3SO 501 A 1 HETATM 28 C C28 3SO . . . J 3 174.807 149.676 39.507 0.71 20 ? C28 3SO 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #