data_4OC6 # _model_server_result.job_id 1zYCBcwEdMYO76FD1GlINw _model_server_result.datetime_utc '2025-01-05 01:57:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 4OC6 # _exptl.entry_id 4OC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 889.614 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-bromo-N-[(2S,3S)-4-{[2-(2,4-dichlorophenyl)ethyl][3-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propanoyl]amino}-3-hydroxy-1-(3-phenoxyphenyl)butan-2-yl]-4,5-dimethoxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OC6 _cell.length_a 77.022 _cell.length_b 77.022 _cell.length_c 251.586 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -38.511 66.703009 41.931 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 99 NAG 3 n C NAG 2 C 2 NAG A 100 NAG 3 n C BMA 3 C 3 BMA A 101 BMA 3 n C MAN 4 C 4 MAN A 102 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 27 1_555 A SG CYS 101 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 51 A CYS 46 1_555 A SG CYS 58 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 B SG CYS 117 B CYS 222 1_555 B SG CYS 121 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 160 B CYS 265 1_555 B SG CYS 197 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A ND2 ASN 75 A ASN 70 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B ND2 ASN 94 B ASN 199 1_555 D C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale5 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? # _chem_comp.formula 'C44 H40 Br Cl2 N3 O8' _chem_comp.formula_weight 889.614 _chem_comp.id 2S1 _chem_comp.mon_nstd_flag . _chem_comp.name 2-bromo-N-[(2S,3S)-4-{[2-(2,4-dichlorophenyl)ethyl][3-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)propanoyl]amino}-3-hydroxy-1-(3-phenoxyphenyl)butan-2-yl]-4,5-dimethoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C36 2S1 sing 1 n n C35 C34 2S1 sing 2 n n O11 C12 2S1 sing 3 n n O11 C7 2S1 sing 4 n n C41 C36 2S1 doub 5 n y C41 C40 2S1 sing 6 n y C36 C37 2S1 sing 7 n y C40 C39 2S1 doub 8 n y C37 CL2 2S1 sing 9 n n C37 C38 2S1 doub 10 n y C34 N33 2S1 sing 11 n n C6 C7 2S1 doub 12 n y C6 C5 2S1 sing 13 n y C7 C8 2S1 sing 14 n y C39 C38 2S1 sing 15 n y C39 CL1 2S1 sing 16 n n BR C5 2S1 sing 17 n n C5 C3 2S1 doub 18 n y C8 O13 2S1 sing 19 n n C8 C9 2S1 doub 20 n y O13 C14 2S1 sing 21 n n N33 C30 2S1 sing 22 n n N33 C44 2S1 sing 23 n n C30 C22 2S1 sing 24 n n O31 C22 2S1 sing 25 n n C3 C9 2S1 sing 26 n y C3 C2 2S1 sing 27 n n C22 C21 2S1 sing 28 n n N1 C2 2S1 sing 29 n n N1 C21 2S1 sing 30 n n C44 C46 2S1 sing 31 n n C44 O45 2S1 doub 32 n n C2 O4 2S1 doub 33 n n C46 C47 2S1 sing 34 n n C21 C20 2S1 sing 35 n n O58 C49 2S1 doub 36 n n C53 C52 2S1 doub 37 n y C53 C54 2S1 sing 38 n y C49 C52 2S1 sing 39 n n C49 N48 2S1 sing 40 n n C52 C51 2S1 sing 41 n y C54 C55 2S1 doub 42 n y N48 C47 2S1 sing 43 n n N48 C50 2S1 sing 44 n n C20 C15 2S1 sing 45 n n C51 C50 2S1 sing 46 n n C51 C56 2S1 doub 47 n y C55 C56 2S1 sing 48 n y C50 O57 2S1 doub 49 n n C16 C15 2S1 doub 50 n y C16 C17 2S1 sing 51 n y C15 C32 2S1 sing 52 n y C25 C26 2S1 doub 53 n y C25 C24 2S1 sing 54 n y O23 C17 2S1 sing 55 n n O23 C24 2S1 sing 56 n n C26 C27 2S1 sing 57 n y C17 C18 2S1 doub 58 n y C24 C29 2S1 doub 59 n y C32 C19 2S1 doub 60 n y C27 C28 2S1 doub 61 n y C29 C28 2S1 sing 62 n y C18 C19 2S1 sing 63 n y C9 H1 2S1 sing 64 n n C12 H2 2S1 sing 65 n n C12 H3 2S1 sing 66 n n C12 H4 2S1 sing 67 n n C14 H5 2S1 sing 68 n n C14 H6 2S1 sing 69 n n C14 H7 2S1 sing 70 n n C16 H8 2S1 sing 71 n n C19 H9 2S1 sing 72 n n C20 H10 2S1 sing 73 n n C20 H11 2S1 sing 74 n n C21 H12 2S1 sing 75 n n C22 H13 2S1 sing 76 n n C27 H14 2S1 sing 77 n n C30 H15 2S1 sing 78 n n C30 H16 2S1 sing 79 n n C32 H17 2S1 sing 80 n n C34 H18 2S1 sing 81 n n C34 H19 2S1 sing 82 n n C35 H20 2S1 sing 83 n n C35 H21 2S1 sing 84 n n N1 H22 2S1 sing 85 n n C6 H23 2S1 sing 86 n n C18 H24 2S1 sing 87 n n C25 H25 2S1 sing 88 n n C26 H26 2S1 sing 89 n n C28 H27 2S1 sing 90 n n C29 H28 2S1 sing 91 n n O31 H29 2S1 sing 92 n n C38 H30 2S1 sing 93 n n C40 H31 2S1 sing 94 n n C41 H32 2S1 sing 95 n n C46 H33 2S1 sing 96 n n C46 H34 2S1 sing 97 n n C47 H35 2S1 sing 98 n n C47 H36 2S1 sing 99 n n C53 H37 2S1 sing 100 n n C54 H38 2S1 sing 101 n n C55 H39 2S1 sing 102 n n C56 H40 2S1 sing 103 n n # _atom_sites.entry_id 4OC6 _atom_sites.fract_transf_matrix[1][1] 0.012983 _atom_sites.fract_transf_matrix[1][2] 0.007496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG B 1 401 400 NAG NAG . E 5 2S1 B 1 402 1 2S1 INH . F 6 GOL B 1 403 1 GOL GOL . G 7 HOH A 1 201 2 HOH HOH . G 7 HOH A 2 202 3 HOH HOH . G 7 HOH A 3 203 4 HOH HOH . G 7 HOH A 4 204 8 HOH HOH . G 7 HOH A 5 205 10 HOH HOH . H 7 HOH B 1 501 1 HOH HOH . H 7 HOH B 2 502 5 HOH HOH . H 7 HOH B 3 503 6 HOH HOH . H 7 HOH B 4 504 7 HOH HOH . H 7 HOH B 5 505 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 2S1 . . . E 5 15.757 40.485 8.848 1 80.29 ? C2 2S1 402 B 1 HETATM 2 C C3 2S1 . . . E 5 14.925 41.405 8.042 1 90.52 ? C3 2S1 402 B 1 HETATM 3 O O4 2S1 . . . E 5 16.492 40.936 9.693 1 80.91 ? O4 2S1 402 B 1 HETATM 4 C C7 2S1 . . . E 5 13.239 43.118 6.564 1 89.84 ? C7 2S1 402 B 1 HETATM 5 C C8 2S1 . . . E 5 12.688 42.057 7.336 1 85.71 ? C8 2S1 402 B 1 HETATM 6 C C9 2S1 . . . E 5 13.534 41.229 8.075 1 86.89 ? C9 2S1 402 B 1 HETATM 7 C C12 2S1 . . . E 5 11.951 45.156 6.294 1 87.62 ? C12 2S1 402 B 1 HETATM 8 C C14 2S1 . . . E 5 10.796 40.676 7.998 1 81.25 ? C14 2S1 402 B 1 HETATM 9 C C15 2S1 . . . E 5 14.762 38.181 11.298 1 70.68 ? C15 2S1 402 B 1 HETATM 10 C C16 2S1 . . . E 5 13.492 38.719 11.008 1 72.23 ? C16 2S1 402 B 1 HETATM 11 C C19 2S1 . . . E 5 14.75 39.275 13.459 1 69.62 ? C19 2S1 402 B 1 HETATM 12 C C20 2S1 . . . E 5 15.473 37.311 10.271 1 67.27 ? C20 2S1 402 B 1 HETATM 13 C C21 2S1 . . . E 5 16.421 38.161 9.417 1 64.3 ? C21 2S1 402 B 1 HETATM 14 C C22 2S1 . . . E 5 17.277 37.283 8.533 1 65.93 ? C22 2S1 402 B 1 HETATM 15 C C24 2S1 . . . E 5 11.328 41.375 12.007 1 65.23 ? C24 2S1 402 B 1 HETATM 16 C C27 2S1 . . . E 5 10.613 43.984 12.747 1 64.52 ? C27 2S1 402 B 1 HETATM 17 C C30 2S1 . . . E 5 18.227 38.168 7.707 1 71.26 ? C30 2S1 402 B 1 HETATM 18 C C32 2S1 . . . E 5 15.373 38.46 12.522 1 68.25 ? C32 2S1 402 B 1 HETATM 19 C C34 2S1 . . . E 5 20.015 36.923 6.461 1 71.33 ? C34 2S1 402 B 1 HETATM 20 C C35 2S1 . . . E 5 20.421 37.934 5.368 1 74.83 ? C35 2S1 402 B 1 HETATM 21 N N1 2S1 . . . E 5 15.686 39.149 8.635 1 71.72 ? N1 2S1 402 B 1 HETATM 22 C C5 2S1 . . . E 5 15.463 42.461 7.258 1 105.21 ? C5 2S1 402 B 1 HETATM 23 C C6 2S1 . . . E 5 14.621 43.286 6.52 1 96.42 ? C6 2S1 402 B 1 HETATM 24 BR BR 2S1 . . . E 5 17.33 42.792 7.125 1 126.36 ? BR 2S1 402 B 1 HETATM 25 O O11 2S1 . . . E 5 12.484 43.939 5.772 1 87.24 ? O11 2S1 402 B 1 HETATM 26 O O13 2S1 . . . E 5 11.338 41.874 7.423 1 81.4 ? O13 2S1 402 B 1 HETATM 27 C C17 2S1 . . . E 5 12.866 39.564 11.931 1 72.71 ? C17 2S1 402 B 1 HETATM 28 C C18 2S1 . . . E 5 13.509 39.825 13.165 1 73.49 ? C18 2S1 402 B 1 HETATM 29 O O23 2S1 . . . E 5 11.637 40.094 11.635 1 68.78 ? O23 2S1 402 B 1 HETATM 30 C C25 2S1 . . . E 5 12.036 42.472 11.486 1 64.77 ? C25 2S1 402 B 1 HETATM 31 C C26 2S1 . . . E 5 11.672 43.773 11.856 1 64.8 ? C26 2S1 402 B 1 HETATM 32 C C28 2S1 . . . E 5 9.906 42.889 13.266 1 63.92 ? C28 2S1 402 B 1 HETATM 33 C C29 2S1 . . . E 5 10.273 41.593 12.901 1 62.82 ? C29 2S1 402 B 1 HETATM 34 O O31 2S1 . . . E 5 16.567 36.363 7.722 1 61.49 ? O31 2S1 402 B 1 HETATM 35 N N33 2S1 . . . E 5 19.592 37.613 7.699 1 71.52 ? N33 2S1 402 B 1 HETATM 36 C C36 2S1 . . . E 5 21.639 38.699 5.812 1 78.79 ? C36 2S1 402 B 1 HETATM 37 C C37 2S1 . . . E 5 21.517 39.975 6.364 1 84.84 ? C37 2S1 402 B 1 HETATM 38 C C38 2S1 . . . E 5 22.612 40.647 6.856 1 85.97 ? C38 2S1 402 B 1 HETATM 39 C C39 2S1 . . . E 5 23.839 40.042 6.82 1 87.68 ? C39 2S1 402 B 1 HETATM 40 C C40 2S1 . . . E 5 23.994 38.765 6.291 1 82.65 ? C40 2S1 402 B 1 HETATM 41 C C41 2S1 . . . E 5 22.894 38.09 5.773 1 79.37 ? C41 2S1 402 B 1 HETATM 42 CL CL2 2S1 . . . E 5 20.039 40.85 6.494 1 90.62 ? CL2 2S1 402 B 1 HETATM 43 CL CL1 2S1 . . . E 5 25.151 40.985 7.42 1 96.98 ? CL1 2S1 402 B 1 HETATM 44 C C44 2S1 . . . E 5 20.374 37.75 8.825 1 75.07 ? C44 2S1 402 B 1 HETATM 45 O O45 2S1 . . . E 5 19.947 38.389 9.779 1 71.79 ? O45 2S1 402 B 1 HETATM 46 C C46 2S1 . . . E 5 21.783 37.173 8.899 1 80.43 ? C46 2S1 402 B 1 HETATM 47 C C47 2S1 . . . E 5 22.329 36.985 10.314 1 84.13 ? C47 2S1 402 B 1 HETATM 48 N N48 2S1 . . . E 5 23.649 36.336 10.249 1 87.98 ? N48 2S1 402 B 1 HETATM 49 C C49 2S1 . . . E 5 24.824 36.966 9.969 1 86.83 ? C49 2S1 402 B 1 HETATM 50 C C50 2S1 . . . E 5 23.842 35.014 10.461 1 89.26 ? C50 2S1 402 B 1 HETATM 51 C C51 2S1 . . . E 5 25.288 34.735 10.339 1 86.41 ? C51 2S1 402 B 1 HETATM 52 C C52 2S1 . . . E 5 25.908 35.968 10.026 1 86.45 ? C52 2S1 402 B 1 HETATM 53 C C53 2S1 . . . E 5 27.302 36.027 9.923 1 84.44 ? C53 2S1 402 B 1 HETATM 54 C C54 2S1 . . . E 5 28.058 34.862 10.084 1 80.62 ? C54 2S1 402 B 1 HETATM 55 C C55 2S1 . . . E 5 27.469 33.646 10.387 1 78.73 ? C55 2S1 402 B 1 HETATM 56 C C56 2S1 . . . E 5 26.084 33.603 10.554 1 83.87 ? C56 2S1 402 B 1 HETATM 57 O O57 2S1 . . . E 5 22.99 34.183 10.756 1 91.63 ? O57 2S1 402 B 1 HETATM 58 O O58 2S1 . . . E 5 24.999 38.157 9.767 1 84.84 ? O58 2S1 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 58 #